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Applications · Neuroscience, Cognitive Science

Rabia Gondur, Usama Bin Sikandar, Evan Schaffer, Mikio Aoi, Stephen Keeley

Characterizing the relationship between neural population activity and behavioral data is a central goal of neuroscience. While latent variable models (LVMs) are successful in describing high-dimensional data, they are typically only designed for a single type of data, making it difficult to identify structure shared across different experimental data modalities. Here, we address this shortcoming by proposing an unsupervised LVM which extracts shared and independent latents for distinct, simultaneously recorded experimental modalities. We do this by combining Gaussian Process Factor Analysis (GPFA), an interpretable LVM for neural spiking data with temporally smooth latent space, with Gaussian Process Variational Autoencoders (GP-VAEs), which similarly use a GP prior to characterize correlations in a latent space, but admit rich expressivity due to a deep neural network mapping to observations. We achieve interpretability in our model by partitioning latent variability into components that are either shared between or independent to each modality. We parameterize the latents of our model in the Fourier domain, and show improved latent identification using this approach over standard GP-VAE methods. We validate our model on simulated multi-modal data consisting of Poisson spike counts and MNIST images that scale and rotate smoothly over time. We show that the multi-modal GP-VAE (MM-GPVAE) is able to not only identify the shared and independent latent structure across modalities accurately, but provides good reconstructions of both images and neural rates on held-out trials. Finally, we demonstrate our framework on two real world multi-modal experimental settings: Drosophila whole-brain calcium imaging alongside tracked limb positions, and Manduca sexta spike train measurements from ten wing muscles as the animal tracks a visual stimulus.

Probabilistic Methods

Gianluca Bencomo, Jake Snell, Thomas L. Griffiths

Bayesian filtering approximates the true underlying behavior of a time-varying system by inverting an explicit generative model to convert noisy measurements into state estimates. This process typically requires matrix storage, inversion, and multiplication or Monte Carlo estimation, none of which are practical in high-dimensional state spaces such as the weight spaces of artificial neural networks. Here, we consider the standard Bayesian filtering problem as optimization over a time-varying objective. Instead of maintaining matrices for the filtering equations or simulating particles, we specify an optimizer that defines the Bayesian filter implicitly. In the linear-Gaussian setting, we show that every Kalman filter has an equivalent formulation using K steps of gradient descent. In the nonlinear setting, our experiments demonstrate that our framework results in filters that are effective, robust, and scalable to high-dimensional systems, comparing well against the standard toolbox of Bayesian filtering solutions. We suggest that it is easier to fine-tune an optimizer than it is to specify the correct filtering equations, making our framework an attractive option for high-dimensional filtering problems.

Social Aspects · Everything Else

Ahmad Faiz, Sotaro Kaneda, Ruhan Wang, Rita Osi, Prateek Sharma, Fan Chen, Lei Jiang

The carbon footprint associated with large language models (LLMs) is a significant concern, encompassing emissions from their training, inference, experimentation, and storage processes, including operational and embodied carbon emissions. An essential aspect is accurately estimating the carbon impact of emerging LLMs even before their training, which heavily relies on GPU usage. Existing studies have reported the carbon footprint of LLM training, but only one tool, mlco2, can predict the carbon footprint of new neural networks prior to physical training. However, mlco2 has several serious limitations. It cannot extend its estimation to dense or mixture-of-experts (MoE) LLMs, disregards critical architectural parameters, focuses solely on GPUs, and cannot model embodied carbon footprints. Addressing these gaps, we introduce \textit{\carb}, an end-to-end carbon footprint projection model designed for both dense and MoE LLMs. Compared to mlco2, \carb~significantly enhances the accuracy of carbon footprint estimations for various LLMs. The source code is released at \url{https://github.com/SotaroKaneda/MLCarbon}.

Applications · Computer Vision

Mingyuan Sun, Donghao Zhang, Zongyuan Ge, Jiaxu Wang, Jia Li, Zheng Fang, Renjing Xu

Event camera, a novel bio-inspired vision sensor, has drawn a lot of attention for its low latency, low power consumption, and high dynamic range. Currently, overfitting remains a critical problem in event-based classification tasks for Spiking Neural Network (SNN) due to its relatively weak spatial representation capability. Data augmentation is a simple but efficient method to alleviate overfitting and improve the generalization ability of neural networks, and saliency-based augmentation methods are proven to be effective in the image processing field. However, there is no approach available for extracting saliency maps from SNNs. Therefore, for the first time, we present Spiking Layer-Time-wise Relevance Propagation rule (SLTRP) and Spiking Layer-wise Relevance Propagation rule (SLRP) in order for SNN to generate stable and accurate CAMs and saliency maps. Based on this, we propose EventRPG, which leverages relevance propagation on the spiking neural network for more efficient augmentation. Our proposed method has been evaluated on several SNN structures, achieving state-of-the-art performance in object recognition tasks including N-Caltech101, CIFAR10-DVS, with accuracies of 85.62% and 85.55%, as well as action recognition task SL-Animals with an accuracy of 91.59%. Our code is available at https://github.com/myuansun/EventRPG.

Deep Learning · Other Representation Learning

Matan Atzmon, Jiahui Huang, Francis Williams, Or Litany

Integrating a notion of symmetry into point cloud neural networks is a provably effective way to improve their generalization capability. Of particular interest are $E(3)$ equivariant point cloud networks where Euclidean transformations applied to the inputs are preserved in the outputs. Recent efforts aim to extend networks that are equivariant with respect to a single global $E(3)$ transformation, to accommodate inputs made of multiple parts, each of which exhibits local $E(3)$ symmetry.In practical settings, however, the partitioning into individually transforming regions is unknown a priori.Errors in the partition prediction would unavoidably map to errors in respecting the true input symmetry. Past works have proposed different ways to predict the partition, which may exhibit uncontrolled errors in their ability to maintain equivariance to the actual partition. To this end, we introduce APEN: a general framework for constructing approximate piecewise-$E(3)$ equivariant point networks. Our framework offers an adaptable design to guaranteed bounds on the resulting piecewise $E(3)$ equivariance approximation errors.Our primary insight is that functions which are equivariant with respect to a finer partition (compared to the unknown true partition) will also maintain equivariance in relation to the true partition. Leveraging this observation, we propose a compositional design for a partition prediction model. It initiates with a fine partition and incrementally transitions towards a coarser subpartition of the true one, consistently maintaining piecewise equivariance in relation to the current partition.As a result, the equivariance approximation error can be bounded solely in terms of (i) uncertainty quantification of the partition prediction, and (ii) bounds on the probability of failing to suggest a proper subpartition of the ground truth one.We demonstrate the practical effectiveness of APEN using two data types exemplifying part-based symmetry: (i) real-world scans of room scenes containing multiple furniture-type objects; and, (ii) human motions, characterized by articulated parts exhibiting rigid movement. Our empirical results demonstrate the advantage of integrating piecewise $E(3)$ symmetry into network design, showing a distinct improvement in generalization accuracy compared to prior works for both classification and segmentation tasks

Applications · Genetics, Cell Biology, etc

Lirong Wu, Yijun Tian, Yufei Huang, Siyuan Li, Haitao Lin, Nitesh Chawla, Stan Z Li

Protein-Protein Interactions (PPIs) are fundamental in various biological processes and play a key role in life activities. The growing demand and cost of experimental PPI assays require computational methods for efficient PPI prediction. While existing methods rely heavily on protein sequence for PPI prediction, it is the protein structure that is the key to determine the interactions. To take both protein modalities into account, we define the microenvironment of an amino acid residue by its sequence and structural contexts, which describe the surrounding chemical properties and geometric features. In addition, microenvironments defined in previous work are largely based on experimentally assayed physicochemical properties, for which the "vocabulary" is usually extremely small. This makes it difficult to cover the diversity and complexity of microenvironments. In this paper, we propose Microenvironment-Aware Protein Embedding for PPI prediction (MPAE-PPI), which encodes microenvironments into chemically meaningful discrete codes via a sufficiently large microenvironment "vocabulary" (i.e., codebook). Moreover, we propose a novel pre-training strategy, namely Masked Codebook Modeling (MCM), to capture the dependencies between different microenvironments by randomly masking the codebook and reconstructing the input. With the learned microenvironment codebook, we can reuse it as an off-the-shelf tool to efficiently and effectively encode proteins of different sizes and functions for large-scale PPI prediction. Extensive experiments show that MAPE-PPI can scale to PPI prediction with millions of PPIs with superior trade-offs between effectiveness and computational efficiency than the state-of-the-art competitors.

Applications · Language, Speech and Dialog

Behzad Shayegh, Yanshuai Cao, Xiaodan Zhu, Jackie Cheung, Lili Mou

We investigate the unsupervised constituency parsing task, which organizes words and phrases of a sentence into a hierarchical structure without using linguistically annotated data. We observe that existing unsupervised parsers capture different aspects of parsing structures, which can be leveraged to enhance unsupervised parsing performance.To this end, we propose a notion of "tree averaging," based on which we further propose a novel ensemble method for unsupervised parsing.To improve inference efficiency, we further distill the ensemble knowledge into a student model; such an ensemble-then-distill process is an effective approach to mitigate the over-smoothing problem existing in common multi-teacher distilling methods.Experiments show that our method surpasses all previous approaches, consistently demonstrating its effectiveness and robustness across various runs, with different ensemble components, and under domain-shift conditions.

Kaixuan Ji, Qingyue Zhao, Jiafan He, Weitong ZHANG, Quanquan Gu

Recent studies have shown that the regret of reinforcement learning (RL) can be polylogarithmic in the planning horizon $H$. However, it remains an open question whether such a result holds for adversarial RL. In this paper, we answer this question affirmatively by proposing the first horizon-free policy search algorithm. To tackle the challenges caused by exploration and adversarially chosen reward over episodes, our algorithm employs (1) a variance-uncertainty-aware weighted least square estimator for the transition kernel; and (2) an occupancy measure-based technique for the online search of a stochastic policy. We show that our algorithm achieves an $\tilde{O}\big((d+\log |\mathcal{S}|)\sqrt{K} + d^2\big)$ regret with full-information feedback, where $d$ is the dimension of a known feature mapping linearly parametrizing the unknown transition kernel of the MDP, $K$ is the number of episodes, $|\mathcal{S}|$ is the cardinality of the state space. We also provide hardness results to justify the near optimality of our algorithm and the inevitability of $\log|\mathcal{S}|$ in the regret bound.

Yangming Li, Boris van Breugel, Mihaela van der Schaar

Because diffusion models have shown impressive performances in a number of tasks, such as image synthesis, there is a trend in recent works to prove (with certain assumptions) that these models have strong approximation capabilities. In this paper, we show that current diffusion models actually have an expressive bottleneck in backward denoising and some assumption made by existing theoretical guarantees is too strong. Based on this finding, we prove that diffusion models have unbounded errors in both local and global denoising. In light of our theoretical studies, we introduce soft mixture denoising (SMD), an expressive and efficient model for backward denoising. SMD not only permits diffusion models to well approximate any Gaussian mixture distributions in theory, but also is simple and efficient for implementation. Our experiments on multiple image datasets show that SMD significantly improves different types of diffusion models (e.g., DDPM), espeically in the situation of few backward iterations.

Social Aspects · Trustworthy Machine Learning

Yanbo Wang, Jian Liang, Ran He

Gradient inversion attacks aim to reconstruct local training data from intermediate gradients exposed in the federated learning framework. Despite successful attacks, all previous methods, starting from reconstructing a single data point and then relaxing the single-image limit to batch level, are only tested under hard label constraints. Even for single-image reconstruction, we still lack an analysis-based algorithm to recover augmented soft labels. In this work, we change the focus from enlarging batchsize to investigating the hard label constraints, considering a more realistic circumstance where label smoothing and mixup techniques are used in the training process. In particular, we are the first to initiate a novel algorithm to simultaneously recover the ground-truth augmented label and the input feature of the last fully-connected layer from single-input gradients, and provide a necessary condition for any analytical-based label recovery methods. Extensive experiments testify to the label recovery accuracy, as well as the benefits to the following image reconstruction. We believe soft labels in classification tasks are worth further attention in gradient inversion attacks.

Probabilistic Methods · Everything Else

Hila Manor, Tomer Michaeli

Denoisers play a central role in many applications, from noise suppression in low-grade imaging sensors, to empowering score-based generative models. The latter category of methods makes use of Tweedie's formula, which links the posterior mean in Gaussian denoising (*i*.*e*., the minimum MSE denoiser) with the score of the data distribution. Here, we derive a fundamental relation between the higher-order central moments of the posterior distribution, and the higher-order derivatives of the posterior mean. We harness this result for uncertainty quantification of pre-trained denoisers. Particularly, we show how to efficiently compute the principal components of the posterior distribution for any desired region of an image, as well as to approximate the full marginal distribution along those (or any other) one-dimensional directions. Our method is fast and memory-efficient, as it does not explicitly compute or store the high-order moment tensors and it requires no training or fine tuning of the denoiser. Code and examples are available on the project [website](https://hilamanor.github.io/GaussianDenoisingPosterior/).

Deep Learning · Generative Models and Autoencoders

Petr Mokrov, Alexander Korotin, Alexander Kolesov, Nikita Gushchin, Evgeny Burnaev

Energy-based models (EBMs) are known in the Machine Learning community for decades. Since the seminal works devoted to EBMs dating back to the noughties, there have been a lot of efficient methods which solve the generative modelling problem by means of energy potentials (unnormalized likelihood functions). In contrast, the realm of Optimal Transport (OT) and, in particular, neural OT solvers is much less explored and limited by few recent works (excluding WGAN-based approaches which utilize OT as a loss function and do not model OT maps themselves). In our work, we bridge the gap between EBMs and Entropy-regularized OT. We present a novel methodology which allows utilizing the recent developments and technical improvements of the former in order to enrich the latter. From the theoretical perspective, we prove generalization bounds for our technique. In practice, we validate its applicability in toy 2D and image domains. To showcase the scalability, we empower our method with a pre-trained StyleGAN and apply it to high-res AFHQ $512\times512$ unpaired I2I translation. For simplicity, we choose simple short- and long-run EBMs as a backbone of our Energy-guided Entropic OT approach, leaving the application of more sophisticated EBMs for future research. Our code is available at: https://github.com/PetrMokrov/Energy-guided-Entropic-OT

Deep Learning · Other Representation Learning

Wenxuan Zhang, Youssef Mohamed, Bernard Ghanem, Philip Torr, Adel Bibi, Mohamed Elhoseiny

We propose and study a realistic Continual Learning (CL) setting where learning algorithms are granted a restricted computational budget per time step while training. We apply this setting to large-scale semi-supervised Continual Learning scenarios with sparse label rate. Previous proficient CL methods perform very poorly in this challenging setting. Overfitting to the sparse labeled data and insufficient computational budget are the two main culprits for such a poor performance. Our new setting encourages learning methods to effectively and efficiently utilize the unlabeled data during training. To that end, we propose a simple but highly effective baseline, DietCL, which utilizes both unlabeled and labeled data jointly. DietCL meticulously allocates computational budget for both types of data. We validate our baseline, at scale, on several datasets, e.g., CLOC, ImageNet10K, and CGLM, under constraint budget setup. DietCL outperforms, by a large margin, all existing supervised CL algorithms as well as more recent continual semi-supervised methods. Our extensive analysis and ablations demonstrate that DietCL is stable under a full spectrum of label sparsity, computational budget and various other ablations.

Deep Learning · Generative Models and Autoencoders

Minh Pham, Kelly Marshall, Niv Cohen, Govind Mittal, Chinmay Hegde

Text-to-image generative models can produce photo-realistic images for an extremely broad range of concepts, and their usage has proliferated widely among the general public. On the flip side, these models have numerous drawbacks, including their potential to generate images featuring sexually explicit content, mirror artistic styles without permission, or even hallucinate (or deepfake) the likenesses of celebrities. Consequently, various methods have been proposed in order to "erase" sensitive concepts from text-to-image models. In this work, we examine seven recently proposed concept erasure methods, and show that targeted concepts are not fully excised from any of these methods. Specifically, we leverage the existence of special learned word embeddings that can retrieve "erased" concepts from the sanitized models with no alterations to their weights. Our results highlight the brittleness of post hoc concept erasure methods, and call into question their use in the algorithmic toolkit for AI safety.

Applications · Language, Speech and Dialog

Szu-Wei Fu, Kuo-Hsuan Hung, Yu Tsao, Yu-Chiang Frank Wang

Speech quality estimation has recently undergone a paradigm shift from human-hearing expert designs to machine-learning models. However, current models rely mainly on supervised learning, which is time-consuming and expensive for label collection. To solve this problem, we propose VQScore, a self-supervised metric for evaluating speech based on the quantization error of a vector-quantized-variational autoencoder (VQ-VAE). The training of VQ-VAE relies on clean speech; hence, large quantization errors can be expected when the speech is distorted. To further improve correlation with real quality scores, domain knowledge of speech processing is incorporated into the model design. We found that the vector quantization mechanism could also be used for self-supervised speech enhancement (SE) model training. To improve the robustness of the encoder for SE, a novel self-distillation mechanism combined with adversarial training is introduced. In summary, the proposed speech quality estimation method and enhancement models require only clean speech for training without any label requirements. Experimental results show that the proposed VQScore and enhancement model are competitive with supervised baselines. The code and pre-trained models will be released

Yu Wang, Tong Zhao, Yuying Zhao, Yunchao Liu, Xueqi Cheng, Neil Shah, Tyler Derr

Graph Neural Networks (GNNs) have shown great promise in learning node embeddings for link prediction (LP). While numerous studies improve the overall GNNs' LP performance, none have explored their varying performance across different nodes and the underlying reasons. To this end, we demystify which nodes perform better from the perspective of their local topology. Despite the widespread belief that low-degree nodes exhibit worse LP performance, we surprisingly observe an inconsistent performance trend. This prompts us to propose a node-level metric, Topological Concentration (TC), based on the intersection of the local subgraph of each node with the ones of its neighbors. We empirically demonstrate that TC correlates with LP performance more than other node-level topological metrics, better identifying low-performing nodes than using degree. With TC, we discover a novel topological distribution shift issue in which nodes' newly joined neighbors tend to become less interactive with their existing neighbors, compromising the generalizability of node embeddings for LP at testing time. To make the computation of TC scalable, We further propose Approximated Topological Concentration (ATC) and justify its efficacy in approximating TC with reduced computation complexity. Given the positive correlation between node TC and its LP performance, we explore the potential of boosting LP performance via enhancing TC by re-weighting edges in the message-passing and discuss its effectiveness with limitations. Our code is publicly available at https://github.com/YuWVandy/Topo_LP_GNN.

Theory · Game Theory

SIQI LIU, Luke Marris, Georgios Piliouras, Ian Gemp, Nicolas Heess

Normal-form games (NFGs) are the fundamental model of *strategic interaction*. We study their representation using neural networks. We describe the inherent equivariance of NFGs --- any permutation of strategies describes an equivalent game --- as well as the challenges this poses for representation learning. We then propose the NfgTransformer architecture that leverages this equivariance, leading to state-of-the-art performance in a range of game-theoretic tasks including equilibrium-solving, deviation gain estimation and ranking, with a common approach to NFG representation. We show that the resulting model is interpretable and versatile, paving the way towards deep learning systems capable of game-theoretic reasoning when interacting with humans and with each other.

Miscellaneous Aspects of Machine Learning · Transfer, Multitask and Meta-learning

Yilang Zhang, Georgios B Giannakis

Relying on prior knowledge accumulated from related tasks, meta-learning offers a powerful approach to learning a novel task from a limited number of training data. Recent approaches use a family of prior probability density functions or recurrent neural network models, whose parameters can be optimized by utilizing labeled data from the observed tasks. While these approaches have appealing empirical performance, expressiveness of their prior is relatively low, which limits generalization and interpretation of meta-learning. Aiming at expressive yet meaningful priors, this contribution puts forth a novel prior representation model that leverages the notion of algorithm unrolling. The key idea is to unroll the proximal gradient descent steps, where learnable piecewise linear functions are developed to approximate the desired proximal operators within *tight* theoretical error bounds established for both smooth and non-smooth proximal functions. The resultant multi-block neural network not only broadens the scope of learnable priors, but also enhances interpretability from an optimization viewpoint. Numerical tests conducted on few-shot learning datasets demonstrate markedly improved performance with flexible, visualizable, and understandable priors.

Theory · Everything Else

Pablo Barcelo, Alexander Kozachinskiy, Anthony W. Lin, Vladimir Podolskii

We contribute to the study of formal languages that can be recognized by transformer encoders. We focus on two self-attention mechanisms: (1) UHAT (Unique Hard Attention Transformers) and (2) AHAT (Average Hard Attention Transformers). UHAT encoders are known to recognize only languages inside the circuit complexity class ${\sf AC}^0$, i.e., accepted by a family of poly-sized and depth-bounded boolean circuits with unbounded fan-ins. On the other hand, AHAT encoders can recognize languages outside ${\sf AC}^0$), but their expressive power still lies within the bigger circuit complexity class ${\sf TC}^0$, i.e., ${\sf AC}^0$-circuits extended by majority gates.We first show a negative result that there is an ${\sf AC}^0$-language that cannot be recognized by an UHAT encoder. On the positive side, we show that UHAT encoders can recognize a rich fragment of ${\sf AC}^0$-languages, namely, all languages definable in first-order logic with arbitrary unary numerical predicates. This logic, includes, for example, all regular languages from ${\sf AC}^0$. We then show that AHAT encoders can recognize all languages of our logic even when we enrich it with counting terms. Using these results, we obtain a characterization of which counting properties are expressible by UHAT and AHAT, in relation to regular languages.

Deep Learning · Other Representation Learning

Maximilian Seitzer, Sjoerd van Steenkiste, Thomas Kipf, Klaus Greff, Mehdi S. M. Sajjadi

Visual understanding of the world goes beyond the semantics and flat structure of individual images. In this work, we aim to capture both the 3D structure and dynamics of real-world scenes from monocular real-world videos. Our Dynamic Scene Transformer (DyST) model leverages recent work in neural scene representation to learn a latent decomposition of monocular real-world videos into scene content, per-view scene dynamics, and camera pose. This separation is achieved through a novel co-training scheme on monocular videos and our new synthetic dataset DySO. DyST learns tangible latent representations for dynamic scenes that enable view generation with separate control over the camera and the content of the scene.