论文检索

Deep Learning · Robustness

Huaxiu Yao, Xinyu Yang, Xinyi Pan, Shengchao Liu, Pang Wei Koh, Chelsea Finn

Distribution shift presents a significant challenge in machine learning, where models often underperform during the test stage when faced with a different distribution than the one they were trained on. In this paper, we focus on domain shifts, which occur when the model is applied to new domains that are different from the ones it was trained on, and propose a new approach called DG. Unlike previous approaches that aim to learn a single model that is domain invariant, DG leverages domain similarities based on domain metadata to learn domain-specific models. Concretely, DG learns a set of training-domain-specific functions during the training stage and reweights them based on domain relations during the test stage. These domain relations can be directly obtained and learned from domain metadata. Under mild assumptions, we theoretically prove that using domain relations to reweight training-domain-specific functions achieves stronger out-of-domain generalization compared to the conventional averaging approach. Empirically, we evaluate the effectiveness of DG using both toy and real-world datasets for tasks such as temperature regression, land use classification, and molecule-protein binding affinity prediction. Our results show that DG consistently outperforms state-of-the-art methods.

Deep Learning · Large Language Models

Madhur Panwar, Kabir Ahuja, Navin Goyal

In-context learning (ICL) is one of the surprising and useful features of large language models and subject of intense research. Recently, stylized meta-learning-like ICL setups have been devised that train transformers on sequences of input-output pairs $(x, f(x))$. The function $f$ comes from a function class and generalization is checked by evaluating on sequences generated from unseen functions from the same class. One of the main discoveries in this line of research has been that for several function classes, such as linear regression, transformers successfully generalize to new functions in the class. However, the inductive biases of these models resulting in this behavior are not clearly understood. A model with unlimited training data and compute is a Bayesian predictor: it learns the pretraining distribution.In this paper we empirically examine how far this Bayesian perspective can help us understand ICL. To this end, we generalize the previous meta-ICL setup to hierarchical meta-ICL setup which involve unions of multiple task families. We instantiate this setup on a diverse range of linear and nonlinear function families and find that transformers can do ICL in this setting as well. Where Bayesian inference is tractable, we find evidence that high-capacity transformers mimic the Bayesian predictor. The Bayesian perspective provides insights into the inductive bias of ICL and how transformers perform a particular task when they are trained on multiple tasks. We also find that transformers can learn to generalize to new function classes that were not seen during pretraining. This involves deviation from the Bayesian predictor. We examine these deviations in more depth offering new insights and hypotheses.

Deep Learning · Large Language Models

Geyang Guo, Ranchi Zhao, Tianyi Tang, Xin Zhao, Ji-Rong Wen

Alignment with human preference is a desired property of large language models (LLMs). Currently, the main alignment approach is based on reinforcement learning from human feedback (RLHF). Despite the effectiveness of RLHF, it is intricate to implement and train, thus recent studies explore how to develop alternative alignment approaches based on supervised fine-tuning (SFT). A major limitation of SFT is that it essentially does imitation learning, which can't fully understand what are the expected behaviors. To address this issue, we propose an improved alignment approach named $\textbf{FIGA}$. Different from prior methods, we incorporate fine-grained (i.e., token or phrase level) quality signals that are derived by contrasting good and bad responses. Our approach has made two major contributions. Firstly, we curate a refined alignment dataset that pairs initial responses and the corresponding revised ones. Secondly, we devise a new loss function can leverage fine-grained quailty signals to instruct the learning of LLMs for alignment. Extensive experiments have demonstrated the effectiveness of our approaches by comparing a number of competitive baselines.

Deep Learning · Large Language Models

Marcus J. Min, Yangruibo Ding, Luca Buratti, Saurabh Pujar, Gail Kaiser, Suman Jana, Baishakhi Ray

Code Large Language Models (Code LLMs) are being increasingly employed in real-life applications, so evaluating them is critical. While the conventional accuracy evaluates the performance of Code LLMs on a set of individual tasks, their self-consistency across different tasks is overlooked. Intuitively, a trustworthy model should be self-consistent when generating natural language specifications for its own code and generating code for its own specifications. Failure to preserve self-consistency reveals a lack of understanding of the shared semantics underlying natural language and programming language, and therefore undermines the trustworthiness of a model. In this paper, we first formally define the self-consistency of Code LLMs and then design a framework, IdentityChain, which effectively and efficiently evaluates the self-consistency and conventional accuracy of a model at the same time. We study eleven Code LLMs and show that they fail to preserve self-consistency, which is indeed a distinct aspect from conventional accuracy. Furthermore, we show that IdentityChain can be used as a model debugging tool to expose weaknesses of Code LLMs by demonstrating three major weaknesses that we identify in current models using IdentityChain. Our code is available at https://github.com/marcusm117/IdentityChain.

Probabilistic Methods · Gaussian Processes

Quoc Phong Nguyen, Bryan Kian Hsiang Low, Patrick Jaillet

Research on optimizing the risk measure of a blackbox function using Gaussian processes, especially Bayesian optimization (BO) of risk measures, has become increasingly important due to the inevitable presence of uncontrollable variables in real-world applications. Nevertheless, existing works on BO of risk measures start the optimization from scratch for every new task without considering the results of prior tasks. In contrast, its vanilla BO counterpart has received a thorough investigation on utilizing prior tasks to speed up the current task through the body of works on meta-BO which, however, have not considered risk measures. To bridge this gap, this paper presents the first algorithm for meta-BO of risk measures (i.e., value-at-risk (VaR) and the conditional VaR), namely meta-VBO, by introducing a novel adjustment to the upper confidence bound acquisition function. Our proposed algorithm exhibits two desirable properties: (i) invariance to scaling and vertical shifting of the blackbox function and (ii) robustness to prior harmful tasks. We provide a theoretical performance guarantee for our algorithm and empirically demonstrate its performance using several synthetic function benchmarks and real-world objective functions.

Deep Learning · Graph Neural Networks

Charilaos Kanatsoulis, Alejandro Ribeiro

Graph Neural Networks (GNNs) are powerful representation learning tools that have achieved remarkable performance in various downstream tasks. However, there are still open questions regarding their ability to count and list substructures, which play a crucial role in biological and social networks. In this work, we fill this gap and characterize the representation {and generalization} power of GNNs in terms of their ability to produce powerful representations that count substructures. In particular, we study the message-passing operations of GNNs with random node input in a novel fashion, and show how they can produce equivariant representations that are associated with high-order statistical moments. Using these representations, we prove that GNNs can learn how to count cycles, {cliques}, quasi-cliques, and the number of connected components in a graph. We also provide new insights into the generalization capacity of GNNs. Our analysis is constructive and enables the design of a generic GNN architecture that shows remarkable performance in four distinct tasks: cycle detection, cycle counting, graph classification, and molecular property prediction.

Applications · Chemistry and Drug Discovery

Yi-Lun Liao, Brandon Wood, Abhishek Das, Tess Smidt

Equivariant Transformers such as Equiformer have demonstrated the efficacy of applying Transformers to the domain of 3D atomistic systems. However, they are limited to small degrees of equivariant representations due to their computational complexity. In this paper, we investigate whether these architectures can scale well to higher degrees. Starting from Equiformer, we first replace $SO(3)$ convolutionswith eSCN convolutions to efficiently incorporate higher-degree tensors. Then, to better leverage the power of higher degrees, we propose three architectural improvements – attention re-normalization, separable $S^2$ activation and separable layer normalization. Putting these all together, we propose EquiformerV2, which outperforms previous state-of-the-art methods on large-scale OC20 dataset by up to 9% on forces, 4% on energies, offers better speed-accuracy trade-offs, and 2$\times$ reduction in DFT calculations needed for computing adsorption energies. Additionally, EquiformerV2 trained on only OC22 dataset outperforms GemNet-OC trained on both OC20 and OC22 datasets, achieving much better data efficiency. Finally, we compare EquiformerV2 with Equiformer on QM9 and OC20 S2EF-2Mdatasets to better understand the performance gain brought by higher degrees.

Applications · Physics

S Chandra Mouli, Muhammad Alam, Bruno Ribeiro

A fundamental challenge in physics-informed machine learning (PIML) is the design of robust PIML methods for out-of-distribution (OOD) forecasting tasks. These OOD tasks require learning-to-learn from observations of the same (ODE) dynamical system with different unknown ODE parameters, and demand accurate forecasts even under out-of-support initial conditions and out-of-support ODE parameters. In this work we propose to improve the OOD robustness of PIML via a meta-learning procedure for causal structure discovery. Using three different OOD tasks, we empirically observe that the proposed approach significantly outperforms existing state-of-the-art PIML and deep learning methods (with $2\times$ to $28\times$ lower OOD errors).

Applications · Genetics, Cell Biology, etc

Hongzhi Wen, Wenzhuo Tang, Xinnan Dai, Jiayuan Ding, Wei Jin, Yuying Xie, Jiliang Tang

The current state-of-the-art single-cell pre-trained models are greatly inspired by the success of large language models. They trained transformers by treating genes as tokens and cells as sentences. However, three fundamental differences between single-cell data and natural language data are overlooked: (1) scRNA-seq data are presented as bag-of-genes instead of sequences of RNAs; (2) Cell-cell relations are more intricate and important than inter-sentence relations; and (3) The quantity of single-cell data is considerably inferior to text data, and they are very noisy. In light of these characteristics, we propose a new pre-trained model, $\textit{CellPLM}$, which takes cells as tokens and tissues as sentences. In addition, we leverage spatially-resolved transcriptomic data in pre-training to facilitate learning cell-cell relationships and introduce a Gaussian prior distribution as an additional inductive bias to overcome data limitations. $\textit{CellPLM}$ is the first single-cell pre-trained transformer that encodes cell-cell relations and it consistently outperforms existing pre-trained and non-pre-trained models in diverse downstream tasks, with 100 times higher inference speed on generating cell embeddings than previous pre-trained models.

Applications · Computer Vision

Weiyu LI, Rui Chen, Xuelin Chen, Ping Tan

It is inherently ambiguous to lift 2D results from pre-trained diffusion models to a 3D world for text-to-3D generation. 2D diffusion models solely learn view-agnostic priors and thus lack 3D knowledge during the lifting, leading to the multi-view inconsistency problem. We find that this problem primarily stems from geometric inconsistency, and avoiding misplaced geometric structures substantially mitigates the problem in the final outputs. Therefore, we improve the consistency by aligning the 2D geometric priors in diffusion models with well-defined 3D shapes during the lifting, addressing the vast majority of the problem. This is achieved by fine-tuning the 2D diffusion model to be viewpoint-aware and to produce view-specific coordinate maps of canonically oriented 3D objects. In our process, only coarse 3D information is used for aligning. This “coarse” alignment not only resolves the multi-view inconsistency in geometries but also retains the ability in 2D diffusion models to generate detailed and diversified high-quality ob-jects unseen in the 3D datasets. Furthermore, our aligned geometric priors (AGP) are generic and can be seamlessly integrated into various state-of-the-art pipelines, obtaining high generalizability in terms of unseen shapes and visual appearance while greatly alleviating the multi-view inconsistency problem.

Reinforcement Learning

Albert Bou, Matteo Bettini, Sebastian Dittert, Vikash Kumar, Shagun Sodhani, Xiaomeng Yang, Gianni De Fabritiis, Vincent Moens

PyTorch has ascended as a premier machine learning framework, yet it lacks a native and comprehensive library for decision and control tasks suitable for large development teams dealing with complex real-world data and environments. To address this issue, we propose TorchRL, a generalistic control library for PyTorch that provides well-integrated, yet standalone components. We introduce a new and flexible PyTorch primitive, the TensorDict, which facilitates streamlined algorithm development across the many branches of Reinforcement Learning (RL) and control. We provide a detailed description of the building blocks and an extensive overview of the library across domains and tasks. Finally, we experimentally demonstrate its reliability and flexibility, and show comparative benchmarks to demonstrate its computational efficiency. TorchRL fosters long-term support and is publicly available on GitHub for greater reproducibility and collaboration within the research community. The code is open-sourced on GitHub.

Optimization · Zero-order and Black-box Optimization

Jinyang Jiang, Zeliang Zhang, Chenliang Xu, Zhaofei Yu, Yijie Peng

While backpropagation (BP) is the mainstream approach for gradient computation in neural network training, its heavy reliance on the chain rule of differentiation constrains the designing flexibility of network architecture and training pipelines. We avoid the recursive computation in BP and develop a unified likelihood ratio (ULR) method for gradient estimation with only one forward propagation. Not only can ULR be extended to train a wide variety of neural network architectures, but the computation flow in BP can also be rearranged by ULR for better device adaptation. Moreover, we propose several variance reduction techniques to further accelerate the training process. Our experiments offer numerical results across diverse aspects, including various neural network training scenarios, computation flow rearrangement, and fine-tuning of pre-trained models. All findings demonstrate that ULR effectively enhances the flexibility of neural network training by permitting localized module training without compromising the global objective and significantly boosts the network robustness.

Optimization · Large Scale, Parallel and Distributed

Xuanlei Zhao, Shenggan Cheng, Guangyang LU, Haotian Zhou, Bin Jia, Yang You

Large deep learning models have achieved impressive performance across a range of applications. However, their large memory requirements, including parameter memory and activation memory, have become a significant challenge for their practical serving. While existing methods mainly address parameter memory, the importance of activation memory has been overlooked. Especially for long input sequences, activation memory is expected to experience a significant exponential growth as the length of sequences increases. In this approach, we propose AutoChunk, an automatic and adaptive compiler system that efficiently reduces activation memory for long sequence inference by chunk strategies. The proposed system generates chunk plans by optimizing through multiple stages. In each stage, the chunk search pass explores all possible chunk candidates and the chunk selection pass identifies the optimal one. At runtime, AutoChunk employs code generation to automatically apply chunk strategies. The experiments demonstrate that AutoChunk can reduce over 80% of activation memory while maintaining speed loss within 10%, extend max sequence length by 3.2x to 11.7x, and outperform state-of-the-art methods by a large margin.

Applications · Physics

Yeongwoo Song, Hawoong Jeong

Recent advances in deep learning for physics have focused on discovering shared representations of target systems by incorporating physics priors or inductive biases into neural networks. While effective, these methods are limited to the system domain, where the type of system remains consistent and thus cannot ensure the adaptation to new, or unseen physical systems governed by different laws. For instance, a neural network trained on a mass-spring system cannot guarantee accurate predictions for the behavior of a two-body system or any other system with different physical laws.In this work, we take a significant leap forward by targeting cross domain generalization within the field of Hamiltonian dynamics. We model our system with a graph neural network (GNN) and employ a meta learning algorithm to enable the model to gain experience over a distribution of systems and make it adapt to new physics. Our approach aims to learn a unified Hamiltonian representation that is generalizable across multiple system domains, thereby overcoming the limitations of system-specific models. We demonstrate that the meta-trained model captures the generalized Hamiltonian representation that is consistent across different physical domains.Overall, through the use of meta learning, we offer a framework that achieves cross domain generalization, providing a step towards a unified model for understanding a wide array of dynamical systems via deep learning.

Deep Learning · Graph Neural Networks

Namyong Park, Xing Wang, Antoine Simoulin, Shuai Yang, Grey Yang, Ryan Rossi, Puja Trivedi, Nesreen Ahmed

Graph neural networks (GNNs) have achieved remarkable success across a wide range of applications, such as recommendation, drug discovery, and question answering. Behind the success of GNNs lies the backpropagation (BP) algorithm, which is the de facto standard for training deep neural networks (NNs). However, despite its effectiveness, BP imposes several constraints, which are not only biologically implausible, but also limit the scalability, parallelism, and flexibility in learning NNs. Examples of such constraints include storage of neural activities computed in the forward pass for use in the subsequent backward pass, and the dependence of parameter updates on non-local signals. To address these limitations, the forward-forward algorithm (FF) was recently proposed as an alternative to BP in the image classification domain, which trains NNs by performing two forward passes over positive and negative data. Inspired by this advance, we propose ForwardGNN in this work, a new forward learning procedure for GNNs, which avoids the constraints imposed by BP via an effective layer-wise local forward training. ForwardGNN extends the original FF to deal with graph data and GNNs, and makes it possible to operate without generating negative inputs (hence no longer forward-forward). Further, ForwardGNN enables each layer to learn from both the bottom-up and top-down signals without relying on the backpropagation of errors. Extensive experiments on real-world datasets show the effectiveness and generality of the proposed forward graph learning framework. We release our code at https://github.com/facebookresearch/forwardgnn.

Deep Learning · Generative Models and Autoencoders

Guocheng Qian, Jinjie Mai, Abdullah Hamdi, Jian Ren, Aliaksandr Siarohin, Bing Li, Hsin-Ying Lee, Ivan Skorokhodov, Peter Wonka, Sergey Tulyakov 等

We present ``Magic123'', a two-stage coarse-to-fine approach for high-quality, textured 3D mesh generation from a single image in the wild using *both 2D and 3D priors*. In the first stage, we optimize a neural radiance field to produce a coarse geometry. In the second stage, we adopt a memory-efficient differentiable mesh representation to yield a high-resolution mesh with a visually appealing texture. In both stages, the 3D content is learned through reference-view supervision and novel-view guidance by a joint 2D and 3D diffusion prior. We introduce a trade-off parameter between the 2D and 3D priors to control the details and 3D consistencies of the generation. Magic123 demonstrates a significant improvement over previous image-to-3D techniques, as validated through extensive experiments on diverse synthetic and real-world images.

Deep Learning · Self-Supervised Learning

Dejiao Zhang, Wasi Ahmad, Ming Tan, Hantian Ding, Ramesh Nallapati, Dan Roth, Xiaofei Ma, Bing Xiang

Recent studies have shown that code language model at scale demonstrate significant performance gains on downstream tasks, i.e., code generation. However, most of the existing works on code representation learning train models at a hundred million parameter scale using very limited pretraining corpora. In this work, we fuel code representation learning with a vast amount of code data via a two-stage pretraining scheme. We first train the encoders via a mix that leverages both randomness in masking language modeling and implicit structure and semantic aspects of programming language. We then enhance the representations via contrastive learning with hard negative and hard positive constructed in an unsupervised manner. We establish an off-the-shelf encoder model that persistently outperforms the existing models on a wide variety of downstream tasks by large margins. To comprehend the factors contributing to successful code representation learning, we conduct detailed ablations and share our findings on (i) a customized and effective token-level denoising scheme for source code; (ii) the importance of hard negatives and hard positives; (iii) how the proposed bimodal contrastive learning boost the cross-lingual semantic search performance; and (iv) how the pretraining schemes decide the downstream task performance scales with the model size.

Deep Learning · Large Language Models

Jianzhe Lin, Maurice Diesendruck, Liang Du, Robin Abraham

The ever-increasing token limits of large language models (LLMs) have enabled long context as input. Many LLMs are trained and fine-tuned to perform zero/few-shot inference using instruction-based prompts. Prompts typically include a detailed task instruction, several examples, and a single data point for inference. This baseline is referred to as “SinglePrompt” in this paper. In terms of token count, when the data input is small compared to instructions and examples, this results in lower token utilization, compared with encoder-based models like fine-tuned BERT. This cost inefficiency, affecting inference speed and compute budget, counteracts many of the benefits that LLMs offer. This paper aims to alleviate this problem by batching multiple data points in each prompt, a strategy we refer to as “BatchPrompt”. We improve token utilization by increasing the “density” of data points, however, this cannot be done naively. Simple batching can degrade performance, especially as batch size increases, and data points can yield different answers depending on their position within a prompt. To address the quality issue while retaining high token utilization, we introduce Batch Permutation and Ensembling (BPE) for BatchPrompt – a simple majority vote over repeated permutations of data, that recovers label quality at the cost of more token usage. To counterbalance this cost, we further propose Self-reflection-guided EArly Stopping (SEAS), which can terminate the voting process early for data points that the LLM handles confidently. Our comprehensive experimental evaluation demonstrates that BPE + SEAS can boost the performance of BatchPrompt by a striking margin on a range of popular NLP tasks, including question answering (Boolq), textual entailment (RTE), and duplicate questions identification (QQP). This performance is even competitive with/higher than single-data prompting (SinglePrompt), while using far fewer LLM calls and input tokens. At batch size 32, our BatchPrompt + BPE + SEAS uses 15.7% the number of LLM calls, and achieves: Boolq accuracy 90.6% → 90.9% with 27.4% tokens, QQP accuracy 87.2% → 88.4% with 18.6% tokens, RTE accuracy 91.5% → 91.1% with 30.8% tokens. We hope our simple yet effective approach will shed light on the future research of large language models. Code: github.com/microsoft/BatchPrompt

Optimization · Non-Convex

Hanmin Li, Avetik Karagulyan, Peter Richtarik

This paper introduces a new method for minimizing matrix-smooth non-convex objectives through the use of novel Compressed Gradient Descent (CGD) algorithms enhanced with a matrix-valued stepsize. The proposed algorithms are theoretically analyzed first in the single-node and subsequently in the distributed settings. Our theoretical results reveal that the matrix stepsize in CGD can capture the objective’s structure and lead to faster convergence compared to a scalar stepsize. As a byproduct of our general results, we emphasize the importance of selecting the compression mechanism and the matrix stepsize in a layer-wise manner, taking advantage of model structure. Moreover, we provide theoretical guarantees for free compression, by designing specific layer-wise compressors for the non-convex matrix smooth objectives. Our findings are supported with empirical evidence.

Deep Learning · Other Representation Learning

Tian Qiu, Xu Wenxiang, lin chen, Zhou Linyun, Zunlei Feng, Mingli Song

Artificial Neural Networks (ANNs) have gained widespread applications across various areas in recent years. The ANN design was initially inspired by principles of biology. The biological neural network's fundamental response process comprises information transmission and aggregation. The information transmission in biological neurons is often achieved by triggering action potentials that propagate through axons. ANNs utilize activation mechanisms to simulate such biological behavior. However, previous studies have only considered static response conditions, while the biological neuron's response conditions are typically dynamic, depending on multiple factors such as neuronal properties and the real-time environment. Therefore, the dynamic response conditions of biological neurons could help improve the static ones of existing activations in ANNs. Additionally, the biological neuron's aggregated response exhibits high specificity for different categories, allowing the nervous system to differentiate and identify objects. Inspired by these biological patterns, we propose a novel Dynamic Neural Response Tuning (DNRT) mechanism, which aligns the response patterns of ANNs with those of biological neurons. DNRT comprises Response-Adaptive Activation (RAA) and Aggregated Response Regularization (ARR), mimicking the biological neuron's information transmission and aggregation behaviors. RAA dynamically adjusts the response condition based on the characteristics and strength of the input signal. ARR is devised to enhance the network's ability to learn category specificity by imposing constraints on the network's response distribution. Extensive experimental studies indicate that the proposed DNRT is highly interpretable, applicable to various mainstream network architectures, and can achieve remarkable performance compared with existing neural response mechanisms in multiple tasks and domains. Code is available at https://github.com/horrible-dong/DNRT.