Current Multimodal Knowledge Graph Construction (MKGC) models struggle with the real-world dynamism of continuously emerging entities and relations, often succumbing to catastrophic forgetting—loss of previously acquired knowledge. This study introduces benchmarks aimed at fostering the development of the continual MKGC domain. We further introduce the MSPT framework, designed to surmount the shortcomings of existing MKGC approaches during multimedia data processing. MSPT harmonizes the retention of learned knowledge (stability) and the integration of new data (plasticity), outperforming current continual learning and multimodal methods. Our results confirm MSPT's superior performance in evolving knowledge environments, showcasing its capacity to navigate the balance between stability and plasticity.
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Despite their impressive generative capabilities, LLMs are hindered by fact-conflicting hallucinations in real-world applications. The accurate identification of hallucinations in texts generated by LLMs, especially in complex inferential scenarios, is a relatively unexplored area. To address this gap, we present FactCHD, a dedicated benchmark designed for the detection of fact-conflicting hallucinations from LLMs. FactCHD features a diverse dataset that spans various factuality patterns, including vanilla, multi-hop, comparison, and set operation. A distinctive element of FactCHD is its integration of fact-based evidence chains, significantly enhancing the depth of evaluating the detectors' explanations. Experiments on different LLMs expose the shortcomings of current approaches in detecting factual errors accurately. Furthermore, we introduce TRUTH-TRIANGULATOR which synthesizes reflective considerations by tool-enhanced ChatGPT and LoRA-tuning based on Llama2, aiming to yield more credible detection through the amalgamation of predictive results and evidence.
In this work, we propose a novel tree-based explanation technique, PEACH (Pretrained-embedding Explanation Across Contextual and Hierarchical Structure), that can explain how text-based documents are classified by using any pretrained contextual embeddings in a tree-based human-interpretable manner. Note that PEACH can adopt any contextual embeddings of the PLMs as a training input for the decision tree. Using the proposed PEACH, we perform a comprehensive analysis of several contextual embeddings on nine different NLP text classification benchmarks. This analysis demonstrates the flexibility of the model by appling several PLM contextual embeddings, its attribute selections, scaling, and clustering methods. Furthermore, we show the utility of explanations by visualising the feature selection and important trend of text classification via human-interpretable word-cloud-based trees, which clearly identify model mistakes and assist in dataset debugging. Besides interpretability, PEACH outperforms or is similar to those from pretrained models. Code and Appendix are in https://github.com/adlnlp/peach.
This paper moves the first step towards automating the composition of Answer Set Programming (ASP) specifications. In particular, the following contributions are provided: (i) A dataset focused on graph-related problem specifications, designed to develop and assess tools for ASP automatic coding; (ii) A two-step architecture, implemented in the NL2ASP tool, for generating ASP programs from natural language specifications. NL2ASP uses neural machine translation to transform natural language into Controlled Natural Language (CNL) statements. Subsequently, CNL statements are converted into ASP code using the CNL2ASP tool. An experimental analysis confirms the viability of the approach.
Memes, initially created for humor and social commentary, have transformed into platforms for offensive online content. Detecting such content is crucial; however, existing deep learning-based meme offensiveness classifiers lack transparency, functioning as opaque black-box systems. While Integrated Gradient and similar input-attribution interpretability methods exist, they often yield inadequate and irrelevant keywords. To bridge this gap, we introduce SEMANTIFY, a novel system featuring a theoretically grounded multi-step filtering process. SEMANTIFY extracts meaningful "tokens" from a predefined vocabulary, generating a pertinent and comprehensive set of interpretable keywords. These extracted keywords reveal the model's awareness of hidden meanings in memes, enhancing transparency. Evaluation of SEMANTIFY using interpretability metrics, including 'leakage-adjusted simulatability,' demonstrates its superiority over various baselines by up to 2.5 points. Human evaluation of 'relatedness' and 'exhaustiveness' of extracted keywords further validates its effectiveness. Additionally, a qualitative analysis of extracted keywords serves as a case study, unveiling model error cases and their reasons. SEMANTIFY contributes to the advancement of more interpretable multimodal systems for meme offensiveness detection, fostering trust for real-world applications.
MEDVOC: Vocabulary Adaptation for Fine-tuning Pre-trained Language Models on Medical Text Summarization
PDF ↗This work presents a dynamic vocabulary adaptation strategy, MEDVOC, for fine-tuning pre-trained language models (PLMs) like BertSumAbs, BART, and PEGASUS for improved medical text summarization. In contrast to existing domain adaptation approaches in summarization, MEDVOC treats vocabulary as an optimizable parameter and optimizes the PLM vocabulary based on fragment score conditioned only on the downstream task's reference summaries. Unlike previous works on vocabulary adaptation (limited only to classification tasks), optimizing vocabulary based on summarization tasks requires an extremely costly intermediate fine-tuning step on large summarization datasets. To that end, our novel fragment score-based hyperparameter search very significantly reduces this fine-tuning time --- from 450 days to less than 2 days on average. Furthermore, while previous works on vocabulary adaptation are often primarily tied to single PLMs, MEDVOC is designed to be deployable across multiple PLMs (with varying model vocabulary sizes, pre-training objectives, and model sizes) --- bridging the limited vocabulary overlap between the biomedical literature domain and PLMs. MEDVOC outperforms baselines by 15.74% in terms of Rouge-L in zero-shot setting and shows gains of 17.29% in high Out-Of-Vocabulary (OOV) concentrations. Our human evaluation shows MEDVOC generates more faithful medical summaries (88% compared to 59% in baselines).
Data-driven discovery of governing equations has kindled significant interests in many science and engineering areas. Existing studies primarily focus on uncovering equations that govern nonlinear dynamics based on direct measurement of the system states (e.g., trajectories). Limited efforts have been placed on distilling governing laws of dynamics directly from videos for moving targets in a 3D space. To this end, we propose a vision-based approach to automatically uncover governing equations of nonlinear dynamics for 3D moving targets via raw videos recorded by a set of cameras. The approach is composed of three key blocks: (1) a target tracking module that extracts plane pixel motions of the moving target in each video, (2) a Rodrigues' rotation formula-based coordinate transformation learning module that reconstructs the 3D coordinates with respect to a predefined reference point, and (3) a spline-enhanced library-based sparse regressor that uncovers the underlying governing law of dynamics. This framework is capable of effectively handling the challenges associated with measurement data, e.g., noise in the video, imprecise tracking of the target that causes data missing, etc. The efficacy of our method has been demonstrated through multiple sets of synthetic videos considering different nonlinear dynamics.
Heterogeneous Causal Metapath Graph Neural Network for Gene-Microbe-Disease Association Prediction
PDF ↗The recent focus on microbes in human medicine highlights their potential role in the genetic framework of diseases. To decode the complex interactions among genes, microbes, and diseases, computational predictions of gene-microbe-disease (GMD) associations are crucial. Existing methods primarily address gene-disease and microbe-disease associations, but the more intricate triple-wise GMD associations remain less explored. In this paper, we propose a Heterogeneous Causal Metapath Graph Neural Network (HCMGNN) to predict GMD associations. HCMGNN constructs a heterogeneous graph linking genes, microbes, and diseases through their pairwise associations, and utilizes six predefined causal metapaths to extract directed causal subgraphs, which facilitate the multi-view analysis of causal relations among three entity types. Within each subgraph, we employ a causal semantic sharing message passing network for node representation learning, coupled with an attentive fusion method to integrate these representations for predicting GMD associations. Our extensive experiments show that HCMGNN effectively predicts GMD associations and addresses association sparsity issue by enhancing the graph's semantics and structure.
A Deep Reinforcement Learning Approach to Balance Viewport Prediction and Video Transmission in 360° Video Streaming
PDF ↗360° video streaming has seen tremendous growth in past years. However, our measurement reveals a dilemma that severely limits QoE. On the one hand, viewport prediction requires the shortest possible prediction distance for high predicting accuracy; On the other hand, video transmission requires more buffered data to compensate for bandwidth fluctuations otherwise substantial playback rebuffering would be incurred. Since no existing method can break this dilemma, the QoE optimization was naturally bottlenecked. This work tackles this challenge by developing QUTA – a novel learning-based streaming system. Specifically, our measurement shows that three kinds of internal streaming parameters have significant impacts on the prediction distance, namely, download pause, data rate threshold, and playback rate. On top of this, we design a new long-term-planning (LTP) learning method that tunes the parameters dynamically based on the network and streaming context. Evaluations with large-scale streaming trace data show that QUTA not only improves the prediction accuracy and QoE by up to 68.4% but also exhibits strong robustness.
Automatic cell type annotation aims to transfer the label knowledge from label-abundant reference data to label-scarce target data, which makes encouraging progress in single-cell RNA-seq data analysis. While previous works have focused on classifying close-set cells and detecting open-set cells during testing, it is still essential to be able to classify unknown cell types as human beings. Additionally, few efforts have been devoted to addressing the challenge of common long-tail dilemma in cell type annotation data. Therefore, in this paper, we propose an innovative distribution-independent universal cell type identification framework called scDET from the perspective of autonomously equilibrated dual-consultative contrastive learning. Our model can generate fine-grained predictions for both close-set and open-set cell types in a long-tailed open-world environment. scDET consists of a contrastive-learning branch and a pseudo-labeling branch, which work collaboratively to provide interactive supervision. Specifically, the contrastive-learning branch provides reliable distribution estimation to regularize the predictions of the pseudo-labeling branch, which in turn guides itself through self-balanced knowledge transfer and a designed novel soft contrastive loss. Extensive experimental results on various evaluation datasets demonstrate the superior performance of scDET over other state-of-the-art single-cell clustering and annotation methods.
Trade When Opportunity Comes: Price Movement Forecasting via Locality-Aware Attention and Iterative Refinement Labeling
PDF ↗Price movement forecasting, aimed at predicting financial asset trends based on current market information, has achieved promising advancements through machine learning (ML) methods. Most existing ML methods, however, struggle with the extremely low signal-to-noise ratio and stochastic nature of financial data, often mistaking noises for real trading signals without careful selection of potentially profitable samples. To address this issue, we propose LARA, a novel price movement forecasting framework with two main components: Locality-Aware Attention (LA-Attention) and Iterative Refinement Labeling (RA-Labeling). (1) LA-Attention, enhanced by metric learning techniques, automatically extracts the potentially profitable samples through masked attention scheme and task-specific distance metrics. (2) RA-Labeling further iteratively refines the noisy labels of potentially profitable samples, and combines the learned predictors robust to the unseen and noisy samples. In a set of experiments on three real-world financial markets: stocks, cryptocurrencies, and ETFs, LARA significantly outperforms several machine learning based methods on the Qlib quantitative investment platform. Extensive ablation studies confirm LARA's superior ability in capturing more reliable trading opportunities.
Fined-grained anomalous cell detection from affected tissues is critical for clinical diagnosis and pathological research. Single-cell sequencing data provide unprecedented opportunities for this task. However, current anomaly detection methods struggle to handle domain shifts prevalent in multi-sample and multi-domain single-cell sequencing data, leading to suboptimal performance. Moreover, these methods fall short of distinguishing anomalous cells into pathologically distinct subtypes. In response, we propose ACSleuth, a novel, reconstruction deviation-guided generative framework that integrates the detection, domain adaptation, and fine-grained annotating of anomalous cells into a methodologically cohesive workflow. Notably, we present the first theoretical analysis of using reconstruction deviations output by generative models for anomaly detection in lieu of domain shifts. This analysis informs us to develop a novel and superior maximum mean discrepancy-based anomaly scorer in ACSleuth. Extensive benchmarks over various single-cell data and other types of tabular data demonstrate ACSleuth's superiority over the state-of-the-art methods in identifying and subtyping anomalies in multi-sample and multi-domain contexts. Our code is available at https://github.com/Catchxu/ACsleuth.
RSAP-DFM: Regime-Shifting Adaptive Posterior Dynamic Factor Model for Stock Returns Prediction
PDF ↗As the latest development of asset pricing research, how to use machine learning to improve the performance of factor models has become a topic of concern in recent years. The variability of the instantaneous macro environment brings great difficulties to quantitative investment, so the extended factor model must learn how to self-adapt to extract the macro pattern from the massive stock volume and price information, and how to continuously map the extracted macro pattern to the stock investment is also an open question. To this end, we propose the first continuous regime-based dynamic factor model, RSAP-DFM, which adaptively extracts continuous macroeconomic information and completes the dynamic explicit mapping of stock returns for the first time through dual regime shifting, while the adversarial posterior factors effectively correct the mapping deviation of prior factors. In addition, our model integrates an innovative two-stage optimization algorithm and normally distributed sampling, which further enhances the robustness of the model. Performance on three real stock datasets validates the validity of our model, which exceeds any previous methods available.
Extracting rich molecular representation is a crucial prerequisite for accurate drug discovery. Recent molecular representation learning methods achieve impressive progress, but the paradigm of learning from a single modality gradually encounters the bottleneck of limited representation capabilities. In this work, we fully consider the rich visual information contained in 3D conformation molecular images (i.e., texture, shadow, color and planar spatial information) and distill graph-based models for more discriminative drug discovery. Specifically, we propose an image-enhanced molecular graph representation learning framework that leverages multi-view molecular images rendered from 3D conformations to boost molecular graph representations. To extract useful auxiliary knowledge from multi-view images, we design a teacher, which is pre-trained on 2 million molecules with conformations through five meticulously designed pre-training tasks. To transfer knowledge from teacher to graph-based students, we pose an efficient cross-modal knowledge distillation strategy with knowledge enhancer and task enhancer. It is worth noting that the distillation architecture of IEM can be directly integrated into existing graph-based models, and significantly improves the capabilities of these models (e.g. GIN, EdgePred, GraphMVP, MoleBERT) for molecular representation learning. In particular, GraphMVP and MoleBERT equipped with IEM achieve new state-of-the-art performance on MoleculeNet benchmark, achieving average 73.89% and 73.81% ROC-AUC, respectively. Code is available at https://github.com/HongxinXiang/IEM.
Existing efforts on human tracking using wireless signal are primarily focused on constrained scenarios with only a few individuals in empty spaces. However, in practical unconstrained scenarios with severe interference and attenuation, accurate multi-person tracking has been intractable. In this paper, we propose NeuralTBD, utilizing the capability of deep models and advancement of Tracking-Before-Detect (TBD) methodology to achieve accurate human tracking. TBD is a classical tracking methodology from signal processing accumulating measurement in time domain to distinguish target traces from interference, which however relies on handcrafted shape/motion models, impeding efficacy in complex indoor scenarios. To tackle this challenge, we build an end-to-end learning-based TBD framework leverages the advanced modeling capabilities of deep models to significantly enhance the performance of TBD. To evaluate NeuralTBD, we collect an RF-based tracking dataset in unconstrained scenarios, which encompasses 4 million annotated radar frames with up to 19 individuals acting in 6 different scenarios. NeuralTBD realizes a 70% improvement in performance compared to conventional TBD methods. To our knowledge, this is the first attempt dealing with RF-based unconstrained human tracking. The code and dataset will be released.
AI-generated content has accelerated the topic of media synthesis, particularly Deepfake, which can manipulate our portraits for positive or malicious purposes. Before releasing these threatening face images, one promising forensics solution is the injection of robust watermarks to track their own provenance. However, we argue that current watermarking models, originally devised for genuine images, may harm the deployed Deepfake detectors when directly applied to forged images, since the watermarks are prone to overlap with the forgery signals used for detection. To bridge this gap, we thus propose AdvMark, on behalf of proactive forensics, to exploit the adversarial vulnerability of passive detectors for good. Specifically, AdvMark serves as a plug-and-play procedure for fine-tuning any robust watermarking into adversarial watermarking, to enhance the forensic detectability of watermarked images; meanwhile, the watermarks can still be extracted for provenance tracking. Extensive experiments demonstrate the effectiveness of the proposed AdvMark, leveraging robust watermarking to fool Deepfake detectors, which can help improve the accuracy of downstream Deepfake detection without tuning the in-the-wild detectors. We believe this work will shed some light on the harmless proactive forensics against Deepfake.
Machine learning (ML) enables accurate and fast molecular property predictions, which is of interest in drug discovery and material design. Their success is based on the principle of similarity at its heart, assuming that similar molecules exhibit close properties. However, activity cliffs challenge this principle, and their presence leads to a sharp decline in the performance of existing ML algorithms, particularly graph-based methods. To overcome this obstacle under a low-data scenario, we propose a novel semi-supervised learning (SSL) method dubbed SemiMol, which employs predictions on numerous unannotated data as pseudo-signals for subsequent training. Specifically, we introduce an additional instructor model to evaluate the accuracy and trustworthiness of proxy labels because existing pseudo-labeling approaches require probabilistic outputs to reveal the model's confidence and fail to be applied in regression tasks. Moreover, we design a self-adaptive curriculum learning algorithm to progressively move the target model toward hard samples at a controllable pace. Extensive experiments on 30 activity cliff datasets demonstrate that SemiMol significantly enhances graph-based ML architectures and outpasses state-of-the-art pretraining and SSL baselines.
ZeroDDI: A Zero-Shot Drug-Drug Interaction Event Prediction Method with Semantic Enhanced Learning and Dual-modal Uniform Alignment
PDF ↗Drug-drug interactions (DDIs) can result in various pharmacological changes, which can be categorized into different classes known as DDI events (DDIEs). In recent years, previously unobserved/unseen DDIEs have been emerging, posing a new classification task when unseen classes have no labelled instances in the training stage, which is formulated as a zero-shot DDIE prediction (ZS-DDIE) task. However, existing computational methods are not directly applicable to ZS-DDIE, which has two primary challenges: obtaining suitable DDIE representations and handling the class imbalance issue. To overcome these challenges, we propose a novel method named ZeroDDI for the ZS-DDIE task. Specifically, we design a biological semantic enhanced DDIE representation learning module, which emphasizes the key biological semantics and distills discriminative molecular substructure-related semantics for DDIE representation learning. Furthermore, we propose a dual-modal uniform alignment strategy to distribute drug pair representations and DDIE semantic representations uniformly in unit sphere and align the matched ones, which can mitigate the issue of class imbalance. Extensive experiments showed that ZeroDDI surpasses the baselines and indicate that it is a promising tool for detecting unseen DDIEs. Our code has been released in https://github.com/wzy-Sarah/ZeroDDI.
MediTab: Scaling Medical Tabular Data Predictors via Data Consolidation, Enrichment, and Refinement
PDF ↗Tabular data prediction has been employed in medical applications such as patient health risk prediction. However, existing methods usually revolve around the algorithm design while overlooking the significance of data engineering. Medical tabular datasets frequently exhibit significant heterogeneity across different sources, with limited sample sizes per source. As such, previous predictors are often trained on manually curated small datasets that struggle to generalize across different tabular datasets during inference. This paper proposes to scale medical tabular data predictors (MediTab) to various tabular inputs with varying features. The method uses a data engine that leverages large language models (LLMs) to consolidate tabular samples to overcome the barrier across tables with distinct schema. It also aligns out-domain data with the target task using a "learn, annotate, and refinement'' pipeline. The expanded training data then enables the pre-trained MediTab to infer for arbitrary tabular input in the domain without fine-tuning, resulting in significant improvements over supervised baselines: it reaches an average ranking of 1.57 and 1.00 on 7 patient outcome prediction datasets and 3 trial outcome prediction datasets, respectively. In addition, MediTab exhibits impressive zero-shot performances: it outperforms supervised XGBoost models by 8.9% and 17.2% on average in two prediction tasks, respectively.
Improving Paratope and Epitope Prediction by Multi-Modal Contrastive Learning and Interaction Informativeness Estimation
PDF ↗Accurately predicting antibody-antigen binding residues, i.e., paratopes and epitopes, is crucial in antibody design. However, existing methods solely focus on uni-modal data (either sequence or structure), disregarding the complementary information present in multi-modal data, and most methods predict paratopes and epitopes separately, overlooking their specific spatial interactions. In this paper, we propose a novel Multi-modal contrastive learning and Interaction informativeness estimation-based method for Paratope and Epitope prediction, named MIPE, by using both sequence and structure data of antibodies and antigens. MIPE implements a multi-modal contrastive learning strategy, which maximizes representations of binding and non-binding residues within each modality and meanwhile aligns uni-modal representations towards effective modal representations. To exploit the spatial interaction information, MIPE also incorporates an interaction informativeness estimation that computes the estimated interaction matrices between antibodies and antigens, thereby approximating them to the actual ones. Extensive experiments demonstrate the superiority of our method in predicting paratopes and epitopes compared to baselines. Additionally, the ablation studies and visualizations demonstrate the superiority of MIPE owing to the better representations acquired through multi-modal contrastive learning and the interaction patterns comprehended by the interaction informativeness estimation.