Efficiently scaling Large Language Models (LLMs) necessitates exploring alternatives to dominant autoregressive (AR) methods, with Masked Diffusion Models (MDMs) emerging as candidates. However, comparing AR (typically decoder-only) and MDM (often encoder-only) paradigms is confounded by differing architectures, obscuring true algorithmic and efficiency trade-offs. This research decouples these factors by evaluating MDMs within a decoder-only framework to: (1) Equitably compare MDM (as Any-Order AR) and standard AR paradigms through discrepancies on orders. (2) Investigate MDM architectural impacts on computational efficiency. We show decoder-only MDMs, despite a larger modeling space, can achieve significant inference speedups ($\sim25\times$) and comparable perplexity with techniques like temperature annealing, offering a path to reduced inference compute. This work provides insights for developing more computationally efficient foundation models by disentangling core modeling choices from architectural influences.
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Applications · Computer Vision
Video diffusion models can generate visually stunning content, yet frequently produce motion that violates physical laws, objects accelerate implausibly or vanish mid-trajectory. We reveal a surprising finding: a 2-step generation often exhibits better physical consistency than a 50-step output from the same model. Through spectral analysis, we trace this to phase erosion during denoising, motion dynamics are $8.5\times$ more sensitive to phase corruption than magnitude, yet the refinement process progressively destroys this critical component. Building on this insight, we propose PhaseLock, a training-free framework that locks motion dynamics to fast inference priors. Rather than requiring 50 steps to establish physics, PhaseLock extracts a motion prior from just 2 steps and enforces it onto high-fidelity generation via Latent Delta Guidance. This decouples physical consistency from visual refinement, ensuring the final output remains grounded in valid trajectories. PhaseLock achieves strong physical consistency with negligible overhead ($1.06\times$ time, $1.02\times$ memory), eliminating the need for expensive external guidance methods ($\sim5\times$ time).
Applications · Chemistry, Physics, and Earth Sciences
Generative models for 3D molecular conformations must respect Euclidean symmetries and concentrate probability mass on thermodynamically favorable, mechanically stable structures. However, E(3)-equivariant diffusion models often reproduce biases from semi-empirical training data rather than capturing the equilibrium distribution of a high-fidelity Hamiltonian. While physics-based guidance can correct this, it faces two computational bottlenecks: expensive quantum-chemical evaluations (e.g., DFT) and the need to repeat such queries at every sampling step. We present Elign, a post-training framework that amortizes both costs. First, we replace expensive DFT evaluations with a faster, pretrained foundational machine-learning force field (MLFF) to provide physical signals. Second, we eliminate repeated run-time queries by shifting physical steering to the training phase. To achieve the second amortization, we formulate reverse diffusion as a reinforcement learning problem and introduce Force--Energy Disentangled Group Relative Policy Optimization (FED-GRPO) to fine-tune the denoising policy. FED-GRPO includes a potential-based energy reward and a force-based stability reward, which are optimized and group-normalized independently. Experiments show that Elign generates conformations with lower gold-standard DFT energies and forces, while improving stability. Crucially, inference remains as fast as unguided sampling, since no energy evaluations are required during generation.
Deep Learning · Generative Models and Autoencoders
Modeling dynamic dependencies from irregularly sampled event sequences is a fundamental challenge in modern machine learning. In many real-world systems, individual-level states evolve continuously over time while being simultaneously influenced by population-level distributional dynamics. However, existing methods typically model these processes in isolation or rely on discrete-time approximations that fail to capture long-range temporal irregularities and sparse observations. This paper studies the problem of learning coupled continuous-time latent dynamics from irregular events, where individual event sequences and global distributional processes evolve asynchronously and interact over time. We propose a Coupled Continuous-Time Latent Dynamics (CoCLD) framework that jointly models individual latent dynamics and population-level distributional shifts, and aligns them in a continuous-time latent space. CoCLD integrates a Diffusion-based Latent Interpolator with Neural Ordinary Differential Equations (Neural ODEs), enabling principled interpolation, generation, and alignment of latent states across arbitrary time points. We show that the proposed coupling mechanism yields a consistent estimator of continuous-time latent dynamics under sparse and irregular observations. Empirical evaluations demonstrate that CoCLD effectively captures dynamic dependencies and generalizes across diverse tasks, including next-event prediction, mobility trajectory generation, and sequential behavior modeling. These results suggest that learning coupled continuous-time latent dynamics provides a powerful paradigm for irregular event sequence modeling.
Deep Learning · Generative Models and Autoencoders
Diffusion large language models (dLLMs) are promising alternatives to autoregressive large language models (AR-LLMs), as they potentially allow higher inference throughput. Reinforcement learning (RL) is a crucial component for dLLMs to achieve comparable performance with AR-LLMs on important tasks, such as reasoning. However, RL algorithms that are well-suited for dLLMs' unique characteristics have yet to be developed. This paper proposes **Distribution Matching Policy Optimization (DMPO)**, a principled and theoretically grounded RL fine-tuning method specifically designed to enhance the reasoning capabilities of dLLMs by matching the dLLM policy distribution to the optimal, reward-tilted one through cross-entropy optimization. We identify a key challenge in the implementation with a small training batch size and propose several effective solutions through a novel weight baseline subtraction technique. DMPO exhibits superior performance on multiple reasoning benchmarks without supervised fine-tuning, with an accuracy improvement of up to $54.3\\%$ over previously SOTA baselines and $66.41\\%$ over the base model, underscoring the effectiveness of the distribution matching framework.
Applications · Time Series
Most spatio-temporal forecasting models assume in-distribution data and can degrade sharply under non-stationary environments. Existing methods for handling distribution shift largely rely on discrete graph inference, making it difficult to disentangle universal dynamics from environment-specific changes and to respect the continuous physical nature of spatio-temporal fields. To this end, we propose STPDE, a general framework that reformulates spatio-temporal dynamics as the evolution of inhomogeneous partial differential equations. STPDE explicitly decomposes dynamics into an Invariant Diffusion Operator that captures universal mechanisms and an Environment Basis Manifold that parameterizes local heterogeneous media. We show that the Green's function of the Laplacian can be effectively approximated by linear attention, enabling global diffusion at scale. Combined with stochastic environment perturbations, STPDE improves robustness under heterogeneous and shifting environments. Extensive experiments on in-distribution forecasting, out-of-distribution generalization, few-shot cross-city transfer, and continual learning demonstrate consistent improvements over state-of-the-art baselines with competitive computational efficiency.
Deep Learning · Generative Models and Autoencoders
Rectified-flow-based diffusion transformers, particularly FLUX, have demonstrated outstanding performance in high-quality image generation. However, achieving fast and accurate inversion—transforming images back to latent noise for faithful reconstruction and editing—remains a challenging bottleneck due to the discretization errors of linear solvers. This paper introduces \textbf{SlerpFlow}, a straightforward yet highly effective zero-shot approach that unlocks the full potential of FLUX for high-fidelity inversion and editing. Unlike existing approaches (e.g., RF-Solver) that rely on complex numerical approximations such as high-order Taylor expansions to correct trajectory errors, we present a geometric view based on the Manifold Hypothesis: the empirically observed trajectory curvature is not a numerical artifact, but rather serves as a necessary ``centripetal force" that constrains the flow to remain on the data manifold. Guided by this insight, SlerpFlow integrates Spherical Linear Interpolation (Slerp) to rectify flow velocity directions on the hypersphere, strictly adhering to the intrinsic curvature of the latent space. Crucially, by caching the corrected velocity for subsequent steps, SlerpFlow achieves high-precision inversion while maintaining the computational efficiency of a first-order Euler solver. Extensive experiments on FLUX-based reconstruction and editing tasks demonstrate that our method delivers superior structural consistency and lower reconstruction errors compared to state-of-the-art baselines without requiring additional training.
Social Aspects · Everything Else
Recent studies have extended diffusion-based instruction-driven 2D image editing pipelines to 3D Gaussian Splatting (3DGS), enabling faithful manipulation of 3DGS assets and greatly advancing 3DGS content creation. However, it also exposes these assets to serious risks of unauthorized editing and malicious tampering. Although imperceptible adversarial perturbations against diffusion models have proven effective for protecting 2D images, applying them to 3DGS encounters two major challenges: view-generalizable protection and balancing invisibility with protection capability. In this work, we propose the first editing safeguard for 3DGS, termed AdLift, which prevents instruction-driven editing across arbitrary views and dimensions by lifting strictly bounded 2D adversarial perturbations into 3D Gaussian-represented safeguard. To ensure both adversarial perturbations effectiveness and invisibility, these safeguard Gaussians are progressively optimized across training views using a tailored Lifted PGD, which first conducts gradient truncation during back-propagation from the editing model at the rendered image and applies projected gradients to strictly constrain the image-level perturbation. Then, the resulting perturbation is backpropagated to the safeguard Gaussian parameters via an image-to-Gaussian fitting operation. We alternate between gradient truncation and image-to-Gaussian fitting, yielding consistent adversarial-based protection performance across different viewpoints and generalizes to novel views. Empirically, qualitative and quantitative results demonstrate that AdLift effectively protects against state-of-the-art instruction-driven 2D image and 3DGS editing.
Applications · Robotics
Video action models are a promising foundation for Vision–Language–Action (VLA) because they can learn rich visual dynamics directly from video. However, likelihood-oriented training of diffusion predictors emphasizes globally plausible futures and does not guarantee precision-critical visual dynamics needed for manipulation, so small prediction errors can be amplified by downstream policies. We propose Dyn-VPP, a post-training framework that casts multi-step denoising as policy optimization and aligns predicted future latents with expert visual dynamics via verifiable terminal reward, without modifying any architecture. This enables explicit optimization of dynamics signals that are not captured by likelihood-only training. As a result, Dyn-VPP yields more accurate visual dynamics and improves downstream task execution. Experiments across diverse simulated and real-world manipulation settings show improved dynamics consistency and consistently higher task success.
Deep Learning · Algorithms
Spiking Neural Networks (SNNs) offer energy-efficient, biologically plausible computation but suffer from non-differentiable spike generation, necessitating reliance on heuristic surrogate gradients. This paper introduces **UltraLIF**, a principled framework that replaces surrogate gradients with *ultradiscretization*, a mathematical formalism from tropical geometry providing continuous relaxations of discrete dynamics. The central insight is that the max-plus semiring underlying ultradiscretization naturally models neural threshold dynamics: the log-sum-exp function serves as a differentiable soft-maximum that converges to hard thresholding as a learnable temperature parameter $\eps \to 0$. Two neuron models are derived from distinct dynamical systems: UltraLIF from the LIF ordinary differential equation (temporal dynamics) and UltraDLIF from the diffusion equation modeling gap junction coupling across neuronal populations (spatial dynamics). Both yield fully differentiable SNNs trainable via standard backpropagation with no forward-backward mismatch. Theoretical analysis establishes pointwise convergence to classical LIF dynamics with quantitative error bounds and bounded non-vanishing gradients. Experiments on six benchmarks spanning static images, neuromorphic vision, and audio demonstrate improvements over surrogate gradient baselines, with gains most pronounced in single-timestep ($T{=}1$) settings on neuromorphic and temporal datasets. An optional sparsity penalty enables significant energy reduction while maintaining competitive accuracy.
Deep Learning · Algorithms
Score-based diffusion models have emerged as prominent deep generative models; however, their application to tabular data remains challenging because their backbones assume fully specified inputs, whereas real-world tabular data often contain missing values. We propose **AugMask**, a plug-and-play training framework that adapts missing-unaware backbones to incomplete data via stochastic regularization. AugMask 1) completes inputs via *conditional stochastic augmentation* using lightweight auxiliary models and 2) masks the loss, using augmented missing entries for conditioning while restricting supervision to observed coordinates. We connect AugMask to a Rao-Blackwellized objective and show that marginalizing missing entries yields a variance-weighted sensitivity penalty, promoting invariance of observed-coordinate reconstruction with respect to uncertain missing entries. Across diverse datasets and missingness regimes, AugMask enables standard diffusion-based tabular generators to match or outperform specialized missing-aware baselines in both sample fidelity and downstream utility. The code will be released.
Building _Virtual Cells_ that can accurately simulate cellular responses to perturbations is a long-standing goal in systems biology. A fundamental challenge is that high-throughput single-cell sequencing is destructive: the same cell cannot be observed both before and after a perturbation. Thus, perturbation prediction requires mapping unpaired control and perturbed populations. Existing models address this by learning maps between distributions, but typically assume a single fixed response distribution when conditioned on observed cellular context (_e.g._, cell type) and the perturbation type. In reality, responses vary systematically due to unobservable latent factors such as microenvironmental fluctuations and complex batch effects, forming a _manifold_ of possible distributions for the same observed conditions. To capture this variability, we introduce PerturbDiff, which shifts modeling from individual cells to entire distributions. By embedding distributions as points in a Hilbert space, we define a diffusion-based generative process operating directly over probability distributions. This allows PerturbDiff to capture population-level response shifts across hidden factors, improving generalization. Benchmarks on established datasets show that PerturbDiff achieves state-of-the-art performance in single-cell response prediction and generalizes substantially better to unseen perturbations. All code and data will be released upon acceptance.
Applications · Chemistry, Physics, and Earth Sciences
Transformer-based autoregressive models have emerged as a unifying paradigm across modalities such as text and images, but their extension to 3D molecule generation remains underexplored. The gap stems from two fundamental challenges: (1) how to tokenize molecules into a canonical 1D sequence of tokens that is invariant to both SE(3) transformations and atom index permutations, and (2) how to design an architecture capable of modeling hybrid atom-based tokens that couple discrete atom types with continuous 3D coordinates. To address these challenges, we introduce InertialAR. It first performs generation-oriented canonical tokenization by aligning each molecule to a canonical inertial frame and reordering atoms, thereby converting arbitrary 3D structures into a unique, SE(3)- and permutation-invariant sequence of tokens for autoregressive generation. Built upon this canonical tokenization, we propose geometric rotary positional encoding (GeoRoPE), which endows Transformer attention with 3D geometric awareness. Finally, InertialAR utilizes a hierarchical autoregressive paradigm to decode the next atom, consecutively predicting the atom type and 3D coordinates via Diffusion Loss. Experimentally, InertialAR achieves state-of-the-art performance on 8 of the 10 evaluation metrics for unconditional generation across QM9, GEOM-Drugs, and B3LYP. Moreover, it significantly outperforms baselines in controllable generation for targeted chemical functionality, attaining state-of-the-art results across all 5 metrics.
The pursuit of high-fidelity image generation faces a fundamental trade-off between sampling speed and output quality. While diffusion models excel in quality, their iterative nature incurs high computational costs. Current efficient methods primarily focus on distilling pre-trained models into few-step samplers; however, this distillation process is challenging and heavily reliant on teacher model quality. In this paper, we introduce \textbf{\XYZFlow}, a novel framework that rethinks this paradigm through multidimensional scaling of flow matching. Unlike MeanFlow's single-step deterministic mapping, our approach intensively scales the expressive power of generative models by enhancing the uniqueness and learnability of probability paths through structured, multidimensional conditioning. Theoretically, we frame autoregressive modeling as an implicit flow straightening mechanism, where expanding contextual constraints reduce trajectory ambiguity. XYZFlow implements this via two orthogonal scaling dimensions: (1)Temporal scaling through non-Markovian conditioning on the full denoising history, and (2) Spatial scaling through our proposed Next Shortcut Prediction, where patches are generated sequentially using the complete denoising trajectories of preceding patches as priors. This multidimensional conditioning constructs a high-dimensional coordinate system for probability flows, enforcing mapping uniqueness. Our Next Shortcut Prediction mechanism specifically enables efficient generation by leveraging rich contextual information from previously generated patches' full denoising processes. Extensive evaluations demonstrate XYZFlow achieves state-of-the-art performance, with 7.2--8.5$\times$ speedup over teachers while maintaining competitive FID. Notably, our structured Next Shortcut Prediction design establishes a more parameter-efficient scaling dimension and achieves superior quality-latency trade-offs compared to simply enlarging models or compressing sampling steps.
Deep Learning · Generative Models and Autoencoders
Text-to-image diffusion models achieve impressive visual fidelity, yet they remain unreliable in multi-object generation. Despite extensive empirical evidence of these failures, the underlying causes remain unclear. We begin by asking how much of this limitation arises from the data itself. To disentangle data effects, we consider two regimes across different dataset sizes: (1) concept generalization, where each individual concept is observed during training under potentially imbalanced data distributions, and (2) compositional generalization, where specific combinations of concepts are systematically held out. To study these regimes, we introduce mosaic (Multi-Object Spatial relations, AttrIbution, Counting), a controlled framework for dataset generation. By training diffusion models on mosaic, we find that scene complexity plays a dominant role rather than concept imbalance, and that counting is uniquely difficult to learn in low-data regimes. Moreover, compositional generalization collapses as more concept combinations are held out during training. These findings highlight fundamental limitations of diffusion models and motivate stronger inductive biases and data design for robust multi-object compositional generation.
Social Aspects · Robustness
The expansion of text-to-image diffusion models has raised concerns about harmful outputs, from fabricated depictions of public figures to sexually explicit imagery. To mitigate such risks, prior work has proposed concept erasure methods that aim to sever unwanted concepts from the model via fine-tuning, yet it remains unclear whether these approaches truly remove all links to the harmful concept or merely conceal superficial connections. In this work, we reveal a critical vulnerability, the Erasure Evasion Backdoors (EEB): an adversary binds a backdoor trigger to a concept slated for removal, and this malicious link survives subsequent erasure. We show that both black-box and white-box adversaries can instantiate this threat. Across six state-of-the-art erasure methods, including robust ones that explicitly search for alternative representations of the target concept, EEB consistently exposes harmful content: up to 82% success against celebrity-identity unlearning, up to 94% for object erasure, and up to 16$\times$ amplification of explicit-content exposure. While EEB uncovers a blind spot in current erasure methods, it also provides a diagnostic tool for stress-testing future concept erasure techniques.
Social Aspects · Safety
While the rapid adoption of multimodal generative models offers immense potential, it has also increased the risks of harmful content synthesis, deepfakes, and copyright infringements. To address these challenges, concept erasure has emerged as a prospective safeguard. However, as the field gradually transitions from U-Net-based diffusion models to Rectified Flow Transformers, erasure research has struggled to keep pace. In this work, we introduce GEM, a simple but highly effective erasure framework for Rectified Flow models. As part of our contribution, we establish a principled bridge between trajectory-based unlearning grounded in Generative Flow Networks and classic teacher-guided erasure: we translate trajectory-based signals into a teacher-guided flow-matching setup that unifies the strengths of both paradigms. Concretely, a teacher provides complementary attraction and repulsion signals that we combine into a single geometric guidance objective, yielding targeted suppression of unwanted concepts while preserving benign generation.
Probabilistic Methods · Monte Carlo and Sampling Methods
Sampling from a distribution $p(x) \propto e^{-\mathcal{E}(x)}$ known up to a normalising constant is an important and challenging problem in statistics. Recent years have seen the rise of a new family of amortised sampling algorithms, commonly referred to as diffusion samplers, that enable fast and efficient sampling from an unnormalised density. Such algorithms have been widely studied for continuous-space sampling tasks; however, their application to problems in discrete space remains largely unexplored. Although some progress has been made in this area, discrete diffusion samplers do not take full advantage of ideas commonly used for continuous-space sampling. In this paper, we propose to bridge this gap by introducing off-policy training techniques for discrete diffusion samplers. We show that these techniques improve the performance of discrete samplers on both established and new synthetic benchmarks. Next, we generalise discrete diffusion samplers to the task of bridging between two arbitrary distributions, introducing data-to-energy Schrödinger bridge training for the discrete domain for the first time. Lastly, we showcase the application of the proposed diffusion samplers to data-free posterior sampling in the discrete latent spaces of image generative models.
Deep Learning · Generative Models and Autoencoders
Standard diffusion models for graph generation typically rely on uniform time-stepping, an approach that overlooks the non-homogeneous dynamics of distributional evolution on complex manifolds. In this paper, we present an information-geometric framework that reinterprets the diffusion sampling trajectory as a parametric curve on a Riemannian manifold. Our key observation is that the Fisher-Rao metric provides a principled measure of the intrinsic distance. By analyzing this metric, we derive the Drift Variation Score (DVS), a geometry-aware indicator that quantifies the instantaneous rate of distributional change. Unlike prior heuristic-based adaptive samplers, our DVS Sampler enforces a constant-speed traversal along the manifold, automatically allocating finer steps to regions of high curvature and larger steps to stable phases. This equal arc-length strategy ensures that each discretization step contributes equally to the information gain. Theoretical analysis demonstrates that DVS characterizes the local stiffness of the sampling dynamics in the Fisher-Rao sense. Experimental results on molecule and social network generation show that our method significantly improves structural fidelity and sampling efficiency.
Probabilistic Methods · Monte Carlo and Sampling Methods
We study the problem of transformation inversion on general Lie groups: a datum is transformed by an unknown group element, and the goal is to recover an inverse transformation that maps it back to the original data distribution. We take a probabilistic view and model the posterior over transformations as a Boltzmann distribution defined by an energy function on data space. To sample from this posterior, we introduce a diffusion process on Lie groups that keeps all updates on-manifold and only requires computations in the associated Lie alge- bra. Our method, Transformation-Inverting Energy Diffusion (TIED), relies on a new trivialized target-score identity that enables efficient score-based sampling of the transformation posterior. As a key application, we focus on test-time equivariance, where the objective is to improve the robustness of pretrained neural networks to input transformations. Experiments on image homographies and PDE symmetries demonstrate that TIED can restore transformed inputs to the training distribution at test time, showing improved performance over strong canonicalization and sampling baselines.