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Applications · Neuroscience, Cognitive Science

Jiayu Lu, Yujin Wang, Xiaofeng Liu, Dandan Li, Bin Wang

Functional brain network analysis plays an important role in understanding and diagnosing psychiatric disorders. However, current methods struggle with subject variations, impairing the model’s generalization ability to the test set. To address this issue, we propose the Subject Invariance-aware Inverse Graph Contrastive Learning (SI-IGCL) model, which adopts a two-stage paradigm with self-supervised subject-invariant pre-training followed by supervised fine-tuning for identification. During the pre-training phase, we construct an inverse contrastive objective that reshapes the embedding space by repelling intra-subject and attracting inter-subject embeddings to learn subject-invariant representations, with an auxiliary correction term to avoid early optimization plateaus. Meanwhile, we incorporate a structure-preserving reconstruction constraint to preserve discriminative information. Moreover, a Hierarchical Topology Enhanced Transformer (HTET) module is designed to enable multi-level modeling of subject-invariant functional patterns. During the fine-tuning phase, a supervised classifier is integrated to perform psychiatric disorder classification. Extensive experiments demonstrate that our method outperforms all state-of-the-art methods. The code is available at https://anonymous.4open.science/r/SI-IGCL.

Deep Learning · Other Representation Learning

Hang Gao, Tao Peng, Baoquan Cui, Hong Huang, Fengge Wu, Zhao Junsuo, Jian Zhang

Large Language Models (LLMs) have significantly advanced code analysis tasks, yet they struggle to detect malicious behaviors fragmented across files, whose intricate dependencies easily get lost in the vast amount of benign code. We therefore propose a graph-centric attention acquisition pipeline that enhances LLMs' ability to localize malicious behavior. The approach parses a project into a code graph, uses an LLM to encode nodes with semantic and structural signals, and trains a Graph Neural Network (GNN) under sparse supervision. The GNN performs an initial detection, and by interpreting these predictions, identifies key code sections that are most likely to contain malicious behavior. These influential regions are then used to guide the LLM's attention for in-depth analysis. This strategy significantly reduces interference from irrelevant context while maintaining low annotation costs. Extensive experiments show that the method consistently outperforms existing approaches on multiple public and custom datasets, highlighting its potential for practical deployment in software security scenarios.

Deep Learning · Large Language Models

Qingnan Ren, Zhen Fang, Shiting Huang, Yu Zeng, Lin Chen, Zehui Chen, Feng Zhao

Reward models are central to Reinforcement Learning from Human Feedback (RLHF), especially for open-ended tasks where evaluation is inherently multi-dimensional. Recent Generative Reward Models (GRMs) improve interpretability by producing natural-language rationales and task-specific evaluation principles. However, most existing GRMs generate principles after reading the actor's response, i.e., $Q+R \rightarrow P$. We show that this coupling induces Principle Drift: when the actor performs reward hacking (e.g., verbosity, self-aggrandizement, or hallucinated self-justifications), the reward model may shift its criteria to rationalize the response, yielding inflated scores that in turn reinforce hacking during RL. We propose IP-GRM (Independent Principle GRM), a two-stage framework that first generates principles solely from the question ($Q \rightarrow P$) and then evaluates the response conditioned on $(Q, R, P)$. This decoupling keeps criteria invariant to response content, producing more objective and stable reward signals. For efficient training, we further introduce a Principle Cache strategy that reuses principles within a group, improving GRPO throughput by 23.66\% while maintaining strict intra-group consistency. In GRPO training on creative writing, IP-GRM suppresses reward hacking and improves WritingBench and CreativeWriting-v3 by up to +4.6 and +7.1 points based on Qwen3-8B, achieving state-of-the-art performance among open-source models.

Applications · Everything Else

Hong Huang, Chengyu Yao, Rongchen Li, Weihao Su, Chengyao Peng, Haiming Chen, Guiyi He

Regular expressions (regexes) frequently exhibit super-linear worst-case behavior in regex engines, exposing software to Regex Denial-of-Service (ReDoS) attacks. Detecting such vulnerabilities is challenging, especially for extended features such as lookarounds and backreferences: existing static approaches are efficient but often lack support for extended features, whereas dynamic and hybrid approaches reduce false positives by executing regex matching on real engines, but incur high runtime overhead. To address this trade-off, we propose ReDoS-MotifGNN (RMGNN), a motif-based graph learning framework for ReDoS detection that leverages the low inference latency of graph neural networks (GNNs). RMGNN converts regexes into Heterogeneous Regex Graphs (HRGs) and encodes three ReDoS-related motifs into HRGs to incorporate domain priors, while preserving the syntactic structure and extended features of the input regex. Furthermore, it applies heterogeneous propagation with kernel-guided motif learning to capture multi-scale semantics, which are fused via residual cross-attention for robust prediction. Comprehensive evaluation on four real-world datasets (over 317k regexes) demonstrates that RMGNN outperforms six state-of-the-art baselines in F1-score and achieves an average 244$\times$ speedup over the top F1-performing baseline.

Deep Learning · Large Language Models

Penghui Qi, Xiangxin Zhou, Zichen Liu, Tianyu Pang, Chao Du, Min Lin, Wee Sun Lee

Reinforcement learning (RL) has become a cornerstone for fine-tuning Large Language Models (LLMs), with Proximal Policy Optimization (PPO) serving as the de facto standard algorithm. Despite its ubiquity, we argue that the core ratio clipping mechanism in PPO is structurally ill-suited for the large vocabularies inherent to LLMs. PPO constrains policy updates based on the probability ratio of sampled tokens, which serves as a noisy single-sample Monte Carlo estimate of the true policy divergence. This creates a sub-optimal learning dynamic: updates to low-probability tokens are aggressively over-penalized, while potentially catastrophic shifts in high-probability tokens are under-constrained, leading to training inefficiency and instability. To address this, we propose Divergence Proximal Policy Optimization (DPPO), which substitutes heuristic clipping with a more principled constraint based on a direct estimate of policy divergence (e.g., Total Variation or KL). To avoid huge memory footprint, we introduce the efficient Binary and Top-K approximations to capture the essential divergence with negligible overhead. Extensive empirical evaluations demonstrate that DPPO achieves superior stability and efficiency compared to existing methods, offering a more robust foundation for RL-based LLM fine-tuning.

Applications · Robotics

Gireesh Nandiraju, Yuanliang(Avery) Ju, Chaoyi Xu, Weiheng Liu, Yuxuan Wan, He Wang

Recent advances in generative models have shown promise in generating behavior plans for long-horizon, sparse reward tasks. While these approaches have achieved promising results, they often lack a principled framework for hierarchical decomposition and struggle with the computational demands of real-time execution, due to their iterative denoising process. In this work, we introduce $\textbf{Hierarchical Diffusion-Flow}$ ($\texttt{\textbf{HDFlow}}$), a novel hierarchical planning framework that optimally leverages the strengths of $\textit{diffusion}$ and $\textit{rectified flow}$ models to overcome the limitations of single-paradigm generative planners. $\texttt{\textbf{HDFlow}}$ employs a high-level diffusion planner to generate sequences of strategic subgoals in a learned latent space, capitalizing on diffusion's powerful exploratory capabilities. These subgoals then guide a low-level rectified flow planner that generates smooth and dense trajectories, exploiting the speed and efficiency of ordinary differential equation (ODE)-based trajectory generation. We evaluate $\texttt{\textbf{HDFlow}}$ on four challenging furniture assembly tasks in both simulation and real-world, where it significantly outperforms state-of-the-art methods. Furthermore, we also showcase our method's generalizability on two long-horizon benchmarks comprising diverse locomotion and manipulation tasks. Project website: https://hdflow-page.github.io/

Social Aspects · Safety

Xiaodan Li, Mengjie Wu, Yao Zhu, Yunna Lv, YueFeng Chen, Cen Chen, Jianmei Guo, Hui Xue'

Large models (LMs) are powerful content generators, yet their open‑ended nature can also introduce potential risks, such as generating harmful or biased content. Existing guardrails mostly perform post-hoc detection that may expose unsafe content before it is caught, and the latency constraints further push them toward lightweight models, limiting detection accuracy. In this work, we propose PlugGuard, a novel plug-in framework that enables streaming risk detection within the LM generation pipeline. PlugGuard leverages intermediate LM hidden states through a Streaming Latent Dynamics Head (SLD), which models the temporal evolution of risk across the generated sequence for more accurate real-time risk detection. To ensure reliable streaming moderation in real applications, we introduce an Anchored Temporal Consistency (ATC) loss to enforce monotonic harm predictions by embedding a benign-then-harmful temporal prior. Besides, for a rigorous evaluation of streaming guardrails, we also present StreamGuardBench—a model-grounded benchmark featuring on-the-fly responses from each protected model, reflecting real-world streaming scenarios in both text and vision–language tasks. Across diverse models and datasets, PlugGuard consistently outperforms state-of-the-art post-hoc guardrails and prior plug-in probes (15.61% higher average F1), while using only 20M parameters and adding less than 0.5 ms of per-token latency. The code and StreamGuardBench are released at PlugGuard to facilitate research on streaming guardrails.

Applications · Robotics

Kevin Qiu, Marek Cygan

We introduce Debate2Create (D2C), a multi-agent LLM framework that formulates robot co-design as structured, iterative debate grounded in physics-based evaluation. A design agent and control agent engage in a thesis-antithesis-synthesis loop, while pluralistic LLM judges provide multi-objective feedback to steer exploration. Across five MuJoCo locomotion benchmarks, D2C achieves up to 3.2× the default Ant score and ~9× on Swimmer, outperforming prior LLM-based methods and black-box optimization. Iterative debate yields 18–35% gains over compute-matched zero-shot generation, and D2C-generated rewards transfer to default morphologies in 4/5 tasks. Our results demonstrate that structured multi-agent debate offers an effective alternative to hand-designed objectives for joint morphology-reward optimization.

Deep Learning · Large Language Models

Chenwei Cui, Rockwell Jackson, Benjamin Joseph Herrera, Ana Tarano, Hannah Kerner

Large language models have transformed many applications but remain expensive to train. Sparse Mixture of Experts (MoE) addresses this through conditional computation, with Expert Parallel (EP) as the standard distributed training method. However, EP has three limitations: communication cost grows linearly with the number of activated experts $k$, load imbalance affects latency and memory usage, and data-dependent communication requires metadata exchange. We propose Multi-Head LatentMoE and Head Parallel (HP), a new architecture and parallelism that achieve $O(1)$ communication cost regardless of $k$, completely balanced traffic, and deterministic communication, all while remaining compatible with EP. To accelerate Multi-Head LatentMoE, we propose IO-aware routing and expert computation. Compared to MoE with EP, Multi-Head LatentMoE with HP trains up to $1.61\times$ faster while having identical performance. With doubled granularity, it achieves higher overall performance while still being $1.11\times$ faster. Our method makes multi-billion-parameter foundation model research more accessible.

Theory · Learning Theory

Tang Thanh Nguyen, Raman Arora

We formulate the problem of \emph{exact unlearning} in reinforcement learning, where the goal is to design an efficient framework that enables the removal of any user’s data upon deletion request, i.e., the online learner’s output after unlearning be \emph{indistinguishable} from what would have been produced had the deleted user never interacted with the learner. For any $\rho >0$, we show that there exists a reinforcement learning (RL) algorithm that is $\rho$-TV-stable and supports an exact unlearning procedure whose expected computational cost is only a $\rho \sqrt{\ln T}$ fraction of the computational cost of retraining from scratch. We construct such a $\rho$-TV-stable RL algorithm for tabular Markov decision processes (MDPs), which achieves a regret bound of $\mathcal{O}(H^2 \sqrt{SAT} + H^3 S^2 A + {H^{2.5} S^2 A}/{\rho})$, where $S, A, H$, and $T$ denote the number of states, the number of actions, the episode horizon, and the number of episodes, respectively. We also establish a lower bound of $\Omega(H\sqrt{SAT}+{SAH}/{\rho})$ for $\rho$-TV-stable RL algorithms, showing that our algorithm is nearly minimax optimal.

Applications · Robotics

Xingyu Zhu, Wenshuo Han, Zhouyu Wang, Yuran Wang, Ruihai Wu, Hao Dong, Fan Tang, Hechang Chen, Hyung Jin Chang, Yixing Gao

Robotic manipulation of flat objects is challenging due to the ungraspable configurations and strong variations in object geometry and material. Existing methods rely on heuristic pre-manipulation and are often evaluated in closed settings with limited generalization. We propose a unified framework that decouples the manipulation into a strategy generator and an action execution module. The strategy generator predicts appropriate manipulation strategies from object point clouds by learning strategy-centric, object-invariant representations via simulated data transformation and contrastive learning. Conditioned on the predicted strategy, the execution module decomposes long-horizon manipulation into reusable action primitives and dynamically composes them to generate stable trajectories. To enable systematic evaluation, we introduce FlatLab, a comprehensive simulation benchmark for robotic flat object manipulation. FlatLab provides high-fidelity physical simulation of diverse rigid and deformable flat objects, automated multi-modal data collection, and standardized task definitions and evaluation protocols. Experiments conducted in FlatLab demonstrate that our approach generalizes effectively to unseen objects and categories, outperforming existing baselines. The project page is provided at \url{https://flatlab-web.github.io/}, and the code will be publicly released.

Deep Learning · Sequential Models, Time series

Sangjun Park

Recent artificial neural networks has demonstrated remarkable capabilities across various tasks, raising expectations for Human-Level AI (HLAI). This position paper argues that integrating explicit memory is instrumental in advancing current AI towards HLAI. The key reason is that the underlying learning mechanism of artificial neural networks bears a notable resemblance to implicit memory of the basal ganglia. However, higher-order cognitive functions necessary for HLAI, such as long-term strategic planning, metacognition, and symbolic reasoning, heavily rely on the hippocampal explicit memory and cannot arise solely from implicit statistical learning. Based on this perspective, we define the computational requirements for artificial explicit memory systems, with the aim of fostering further research and laying the groundwork for explicit memory integration.

Applications · Computer Vision

Jingtong Dou, Chuancheng Shi, Yemin Wang, Shiming Guo, Anqi Yi, Wenhua Wu, Li Zhang, Fei Shen, Tat-Seng Chua

As generative AI achieves hyper-realism, superficial artifact detection has become obsolete. While prevailing methods rely on resource-intensive fine-tuning of black-box backbones, we propose that forgery detection capability is already encoded within pre-trained models rather than requiring end-to-end retraining. To elicit this intrinsic capability, we propose the discriminative neural anchors (DNA) framework, which employs a coarse-to-fine excavation mechanism. First, by analyzing feature decoupling and attention distribution shifts, we pinpoint critical intermediate layers where the focus of the model logically transitions from global semantics to local anomalies. Subsequently, we introduce a triadic fusion scoring metric paired with a curvature-truncation strategy to strip away semantic redundancy, precisely isolating the forgery-discriminative units (FDUs) inherently imprinted with sensitivity to forgery traces. Moreover, we introduce HIFI-Gen, a high-fidelity synthetic benchmark built upon the very latest models, to address the lag in existing datasets. Experiments demonstrate that by solely relying on these anchors, DNA achieves superior detection performance even under few-shot conditions. Furthermore, it exhibits remarkable robustness across diverse architectures and against unseen generative models, validating that waking up latent neurons is more effective than extensive fine-tuning.

Applications · Language, Speech and Dialog

Mugeng Liu, Shuoqi Li, Yixuan Zhang, Yun Ma

In the agentic web era, LLM-based agents increasingly invoke web services as tools, yet most interfaces are still exposed as \emph{static endpoints}. As tasks grow into long-horizon workflows with loops, conditionals, joins, and retries, agents must externalize control flow into stepwise calls and multi-round reasoning, causing excessive network turns, over-/under-fetching, and brittle recovery under partial failures. We argue that the bottleneck is representational: endpoint sequences are a poor interface for expressing tool intent. We present ToolPro, which represents an agent’s tool intent as an \emph{executable tool program}---a composable program that compactly encodes multi-step service interactions with explicit effect types. ToolPro combines (i) constraint-guided program construction with compiler/runtime feedback to improve executability of LLM-produced code, (ii) effect-aware replay that provides exactly-once semantics for state-modifying calls across iterative repair and re-execution, and (iii) a profile-driven consolidation policy that decides when program execution outperforms stepwise calling. We instantiate ToolPro over MCP-style services with WebAssembly sandboxing. Across three real applications and six workflows, ToolPro reduces end-to-end latency by up to 37.2\% and client-side traffic by up to 85.3\%, with larger gains under higher network latency and increased workflow complexity. We believe that ToolPro lays a foundation for agent-facing service interfaces in the emerging agentic web.

Optimization · Stochastic

Feng Zhu, Robert Heath, Aritra Mitra

Stochastic variance-reduced algorithms such as Stochastic Average Gradient (SAG) and SAGA, and their deterministic counterparts like the Incremental Aggregated Gradient (IAG) method, have been extensively studied in large-scale machine learning. Despite their popularity, existing analyses for these algorithms are disparate, relying on different proof techniques tailored to each method. Furthermore, the original proof of SAG is known to be notoriously involved, requiring computer-aided analysis. Focusing on finite-sum optimization with smooth and strongly convex objectives, our main contribution is to develop a single unified convergence analysis that applies to all three algorithms: SAG, SAGA, and IAG. Our analysis features two key steps: (i) establishing a bound on delays due to sub-sampling using simple concentration tools, and (ii) carefully designing a novel Lyapunov function that accounts for such delays. The resulting proof is short and modular, providing high-probability bounds for SAG and SAGA that can be seamlessly extended to non-convex objectives and Markovian sampling. As an immediate byproduct of our new analysis technique, we obtain the best known rates for the IAG algorithm, significantly improving upon prior bounds.

Probabilistic Methods · Everything Else

Yinjie Min, Liuhua Peng, Changliang Zou

Existing evaluations of conformal prediction, such as prediction efficiency and test-conditional coverage, are defined in expectation over the calibration data. In practice, when only one calibration set of limited size is available, the prediction sets can exhibit high variability, especially for methods with localization. We formalize this concern as **set stability**, defined as the variance of the conditional expectation of the set size given the calibration data. To improve stability without requiring additional target-task labels, we propose Stable Localized Conformal Prediction (SLCP), a transfer learning approach that utilizes labeled source-task data and unlabeled target data. Theoretically, we characterize the marginal coverage and stability of SLCP; empirically, it delivers more stable prediction sets than standard conformal prediction methods with localization when calibration data are limited.

Applications · Language, Speech and Dialog

Masataka Yoneda, Yusuke Matsushita, Go Kamoda, Kohei Suenaga, Takuya Akiba, Masaki Waga, Sho Yokoi

We present an ultra-fast and flexible search algorithm that enables search over trillion-scale natural language corpora in under 0.3 seconds while handling semantic variations (substitution, insertion, and deletion). Our approach employs string matching based on suffix arrays that scales well with corpus size. To mitigate the combinatorial explosion induced by the semantic relaxation of queries, our method is built on two key algorithmic ideas: fast exact lookup enabled by a disk-aware design, and dynamic corpus-aware pruning. We theoretically show that the proposed method suppresses exponential growth in the search space with respect to query length by leveraging statistical properties of natural language. In experiments on FineWeb-Edu (1.4T tokens), we show that our method achieves significantly lower search latency than existing methods: infini-gram, infini-gram mini, and SoftMatcha. As a practical application, we demonstrate that our method identifies benchmark contamination in training corpora, unidentified by existing approaches. We also provide an online demo of fast, soft search across corpora in six languages.

Applications · Health / Medicine

John Wu, Yongda Fan, Zhenbang Wu, Paul Landes, Eric Schrock, Sayeed Sajjad Razin, Arjun Chatterjee, Naveen Baskaran, Joshua Steier, Andrea Fitzpatrick 等

Difficulty replicating baselines, high computational costs, and required domain expertise create persistent barriers to clinical AI research. To address these challenges, we introduce PyHealth 2.0, an enhanced clinical deep learning toolkit that enables predictive modeling in as few as 7 lines of code. PyHealth 2.0 offers three key contributions: (1) a comprehensive toolkit addressing reproducibility and compatibility challenges by unifying 15+ datasets, 20+ clinical tasks, 25+ models, 5+ interpretability methods, and uncertainty quantification including conformal prediction within a single framework that supports diverse clinical data modalities—signals, imaging, and electronic health records—with translation of 5+ medical coding standards; (2) accessibility-focused design accommodating multimodal data and diverse computational resources with up to 39× faster processing and 20× lower memory usage, enabling work from 16GB laptops to production systems; and (3) an active open-source community of 400+ members lowering domain expertise barriers through extensive documentation, reproducible research contributions, and collaborations with academic health systems and industry partners, including multi-language support via RHealth. PyHealth 2.0 establishes an open-source foundation and community advancing accessible, reproducible healthcare AI.

Deep Learning · Foundation Models

Guri Zabërgja, Rafiq Kamel, Arlind Kadra, Christian Frey, Josif Grabocka

The long-standing dominance of gradient-boosted decision trees for tabular data has recently been challenged by in-context learning tabular foundation models. In-context learning methods fit and predict in one forward pass without parameter updates by leveraging the training data as context for predicting on query test points. While recent tabular foundation models achieve state-of-the-art performance, their transformer architecture based on the attention mechanism has quadratic complexity regarding dataset size, which in turn increases the overhead on training and inference time, and limits the capacity of the models to handle large-scale datasets. In this work, we propose TACO, an end-to-end tabular compression model that compresses the training dataset in a latent space. We test our method on the TabArena benchmark, where our proposed method is up to 94x faster in inference time, while consuming up to 97% less memory compared to the state-of-the-art tabular Transformer architecture, all while retaining performance without significant degradation. Lastly, our method not only scales better with increased dataset sizes, but it also achieves better performance compared to other baselines.

Applications · Health / Medicine

Weimin Wu, Xuefeng Song, Yibo Wen, Qinjie Lin, Zhihan Zhou, Jerry Yao-Chieh Hu, Zhong Wang, Han Liu

We introduce Genome-Factory, the first integrated Python library for tuning, deploying, and interpreting genomic foundation models. Our core contribution is to simplify and unify the workflow for genomic model development: data collection, model tuning, inference, benchmarking, and interpretability. For data collection, Genome-Factory offers an automated pipeline to download genomic sequences and preprocess them. It also includes quality control like GC content normalization. For model tuning, Genome-Factory supports three approaches: full-parameter, low-rank adaptation, and adapter-based fine-tuning. It is compatible with a wide range of genomic models. For inference, Genome-Factory enables both embedding extraction and DNA sequence generation. For benchmarking, we include two existing benchmarks and provide a flexible interface for users to incorporate additional benchmarks. For interpretability, Genome-Factory introduces the first open-source biological interpreter based on a sparse auto-encoder. This module disentangles embeddings into sparse, near-monosemantic latent units and links them to genomic features by regressing on external readouts. To improve accessibility, Genome-Factory offers a zero-code command-line and a user-friendly web interface. We validate the utility of Genome-Factory across three dimensions: (i) Compatibility with diverse models and fine-tuning methods; (ii) Benchmarking downstream performance using two open-source benchmarks; (iii) Biological interpretation of learned representations with DNABERT-2. These results highlight its practical value for real-world genomic analysis.