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General Machine Learning · Representation Learning

Astrit Tola, Funmilola Mary Taiwo, Cuneyt Akcora, Baris Coskunuzer

Graph embeddings play a critical role in graph representation learning, allowing machine learning models to explore and interpret graph-structured data. However, existing methods often rely on opaque, high-dimensional embeddings, limiting interpretability and practical visualization. In this work, we introduce Topological Evolution Rate (TopER), a novel, low-dimensional embedding approach grounded in topological data analysis. TopER simplifies a key topological approach, Persistent Homology, by calculating the evolution rate of graph substructures, resulting in intuitive and interpretable visualizations of graph data. This approach not only enhances the exploration of graph datasets but also delivers competitive performance in graph clustering and classification tasks. Our TopER-based models achieve or surpass state-of-the-art results across molecular, biological, and social network datasets in tasks such as classification, clustering, and visualization.

Deep Learning · Robustness

Haolang Lu, Yilian Liu, Jingxin Xu, Guoshun Nan, Yuanlong Yu, Zhican Chen, Kun Wang

The development of Reasoning Large Language Models (RLLMs) has significantly improved multi-step reasoning capabilities, but it has also made hallucination problems more frequent and harder to eliminate. While existing approaches address hallucination through external knowledge integration, model parameter analysis, or self-verification mechanisms, they fail to provide a comprehensive insight into how hallucinations **emerge** and **evolve** throughout the reasoning chain. In this work, we investigate hallucination causality under constrained knowledge domains by auditing the Chain-of-Thought (CoT) trajectory and assessing the model's cognitive confidence in potentially erroneous or biased claims. Analysis reveals that in long-CoT settings, RLLMs may iteratively reinforce biases and errors through flawed reflective processes, ultimately inducing hallucinated reasoning paths. Counterintuitively, even with interventions at hallucination origins, reasoning chains display pronounced ''chain disloyalty'', resisting correction and sustaining flawed trajectories. We further point out that existing hallucination detection methods are *less reliable and interpretable than previously assumed*, especially in complex multi-step reasoning contexts. Unlike Anthropic's circuit tracing that requires access to model parameters, our auditing **enables more interpretable long-chain hallucination attribution in black-box settings**, demonstrating stronger generalizability and practical utility. Our code is available at [this link](https://github.com/Winnie-Lian/AHa_Meta_Cognitive).

Deep Learning · Everything Else

Soutrik Sarangi, Yonatan Sverdlov, Nadav Dym, Abir De

Motivated by applications for set containment problems, we consider the following fundamental problem: can we design set-to-vector functions so that the natural partial order on sets is preserved, namely $S\subseteq T \text{ if and only if } F(S)\leq F(T) $. We call functions satisfying this property \emph{Monotone and Separating (MAS)} set functions. We establish lower and upper bounds for the vector dimension necessary to obtain MAS functions, as a function of the cardinality of the multisets and the underlying ground set. In the important case of an infinite ground set, we show that MAS functions do not exist, but provide a model called \our\ which provably enjoys a relaxed MAS property we name 'weakly MAS' and is stable in the sense of Holder continuity. We also show that MAS functions can be used to construct universal models which are monotone by construction, and can approximate all monotone set functions. Experimentally, we consider a variety of set containtment tasks. The experiments show the benefit of using our \our\ model, in comparsion with standard set models which do not incorporate set containment as an inductive bias.

Computer Vision · 3D Rendering & Reconstruction

Nan Wang, Lixing Xiao, Yuantao Chen, Weiqing Xiao, Pierre Merriaux, Lei Lei, Ziyang Yan, Saining Zhang, Shaocong Xu, chongjie Ye 等

Neural rendering techniques, including NeRF and Gaussian Splatting (GS), rely on photometric consistency to produce high-quality reconstructions. However, in real-world driving scenarios, it is challenging to guarantee perfect photometric consistency in acquired images. Appearance codes have been widely used to address this issue, but their modeling capability is limited, as a single code is applied to the entire image. Recently, the bilateral grid was introduced to perform pixel-wise color mapping, but it is difficult to optimize and constrain effectively. In this paper, we propose a novel multi-scale bilateral grid that unifies appearance codes and bilateral grids. We demonstrate that this approach significantly improves geometric accuracy in dynamic, decoupled autonomous driving scene reconstruction, outperforming both appearance codes and bilateral grids. This is crucial for autonomous driving, where accurate geometry is important for obstacle avoidance and control. Our method shows strong results across four datasets: Waymo, NuScenes, Argoverse, and PandaSet. We further demonstrate that the improvement in geometry is driven by the multi-scale bilateral grid, which effectively reduces floaters caused by photometric inconsistency.

Applications · Genetics, Cell Biology, etc

Gongxu Luo, Haoyue Dai, Longkang Li, Chengqian Gao, Boyang Sun, Kun Zhang

Gene regulatory network inference (GRNI) aims to discover how genes causally regulate each other from gene expression data. It is well-known that statistical dependencies in observed data do not necessarily imply causation, as spurious dependencies may arise from *latent confounders*, such as non-coding RNAs. Numerous GRNI methods have thus been proposed to address this confounding issue. However, dependencies may also result from *selection*—only cells satisfying certain survival or inclusion criteria are observed—while these selection-induced spurious dependencies are frequently overlooked in gene expression data analyses. In this work, we show that such selection is ubiquitous and, when ignored or conflated with true regulations, can lead to flawed causal interpretation and misguided intervention recommendations. To address this challenge, a fundamental question arises: can we distinguish dependencies due to regulation, confounding, and crucially, selection? We show that gene perturbations offer a simple yet effective answer: selection-induced dependencies are *symmetric* under perturbation, while those from regulation or confounding are not. Building on this motivation, we propose GISL (Gene regulatory network Inference in the presence of Selection bias and Latent confounders), a principled algorithm that leverages perturbation data to uncover both true gene regulatory relations and non-regulatory mechanisms of selection and confounding up to the equivalence class. Experiments on synthetic and real-world gene expression data demonstrate the effectiveness of our method.

Deep Learning · Attention Mechanisms

Tsubasa Masumura, Masato Taki

Associative memory models based on Hopfield networks and self-attention based on key-value mechanisms have been popular approaches in the study of memory mechanisms in deep learning. It has been pointed out that the state update rule of the modern Hopfield network (MHN) in the adiabatic approximation is in agreement with the self-attention layer of Transformer. In this paper, we go beyond this approximation and investigate the relationship between MHN and self-attention. Our results show that the correspondence between Hopfield networks and Transformers can be established in a more generalized form by adding a new variable, the hidden state derived from the MHN, to self-attention. This new attention mechanism, modern Hopfield attention (MHA), allows the inheritance of attention scores from the input layer of the Transformer to the output layer, which greatly improves the nature of attention weights. In particular, we show both theoretically and empirically that MHA hidden states significantly improve serious problem of deep Transformers known as rank collapse and token uniformity. We also confirm that MHA can systematically improve accuracy without adding training parameters to the Vision Transformer or GPT. Our results provide a new case in which Hopfield networks can be a useful perspective for improving the Transformer architecture.

Optimization · Neural Network Optimization

Donghyeon Joo, Helya Hosseini, Ramyad Hadidi, Bahar Asgari

We demonstrate that unstructured sparsity significantly improves KV cache compression for LLMs, enabling sparsity levels up to 70\% without compromising accuracy or requiring fine-tuning. We conduct a systematic exploration of pruning strategies and find per-token magnitude-based pruning as highly effective for both Key and Value caches under unstructured sparsity, surpassing prior structured pruning schemes. The Key cache benefits from prominent outlier elements, while the Value cache surprisingly benefits from a simple magnitude-based pruning despite its uniform distribution. KV cache size is the major bottleneck in decode performance due to high memory overhead for large context lengths. To address this, we use a bitmap-based sparse format and a custom attention kernel capable of compressing and directly computing over compressed caches pruned to arbitrary sparsity patterns, significantly accelerating memory-bound operations in decode computations and thereby compensating for the overhead of runtime pruning and compression. Our custom attention kernel coupled with the bitmap-based format delivers substantial compression of KV cache up to 45\% of dense inference and thereby enables longer context lengths and increased tokens/sec throughput of up to 2.23$\times$ compared to dense inference. Our pruning mechanism and sparse attention kernel is available at https://github.com/dhjoo98/mustafar.

Applications · Language, Speech and Dialog

Tyler Chang, Benjamin Bergen

In Transformer language models, activation vectors transform from current token embeddings to next token predictions as they pass through the model. To isolate a minimal form of this transformation, we identify language model subnetworks that make bigram predictions, naive next token predictions based only on the current token. We find that bigram subnetworks can be found in fully trained language models up to 1B parameters, and these subnetworks are critical for model performance even when they consist of less than 0.2% of model parameters. Bigram subnetworks are concentrated in the first Transformer MLP layer, and they overlap significantly with subnetworks trained to optimally prune a given model. Mechanistically, the bigram subnetworks often recreate a pattern from the full models where the first layer induces a sharp change that aligns activations with next token predictions rather than current token representations. Our results demonstrate that bigram subnetworks comprise a minimal subset of parameters that are both necessary and sufficient for basic next token predictions in language models, and they help drive the transformation from current to next token activations in the residual stream. These subnetworks can lay a foundation for studying more complex language model circuits by building up from a minimal circuit.

Applications · Robotics

Edward Hu, Jie Wang, Xingfang Yuan, Fiona Luo, Muyao Li, Gaspard Lambrechts, Oleh Rybkin, Dinesh Jayaraman

A robot's instantaneous sensory observations do not always reveal task-relevant state information. Under such partial observability, optimal behavior typically involves explicitly acting to gain the missing information. Today's standard robot learning techniques struggle to produce such active perception behaviors. We propose a simple real-world robot learning recipe to efficiently train active perception policies. Our approach, asymmetric advantage weighted regression (AAWR), exploits access to "privileged" extra sensors at training time. The privileged sensors enable training high-quality privileged value functions that aid in estimating the advantage of the target policy. Bootstrapping from a small number of potentially suboptimal demonstrations and an easy-to-obtain coarse policy initialization, AAWR quickly acquires active perception behaviors and boosts task performance. In evaluations on 8 manipulation tasks on 3 robots spanning varying degrees of partial observability, AAWR synthesizes reliable active perception behaviors that outperform all prior approaches. When initialized with a "generalist" robot policy that struggles with active perception tasks, AAWR efficiently generates information-gathering behaviors that allow it to operate under severe partial observability for manipulation tasks. Website: https://penn-pal-lab.github.io/aawr/

Reinforcement Learning · Deep RL

Scott Cheng, Meng-Yu Tsai, Ding-Yong Hong, Mahmut T Kandemir

AlphaZero has achieved remarkable success in complex decision-making problems through self-play and neural network training. However, its self-play process remains inefficient due to limited exploration of high-uncertainty positions, the overlooked runner-up decisions in Monte Carlo Tree Search (MCTS), and high variance in value labels. To address these challenges, we propose and evaluate uncertainty-guided exploration by branching from high-uncertainty positions using our proposed Label Change Rate (LCR) metric, which is further refined by a Bayesian inference framework. Our proposed approach leverages runner-up MCTS decisions to create multiple variations, and ensembles value labels across these variations to reduce variance. We investigate three key design parameters for our branching strategy: where to branch, how many variations to branch, and which move to play in the new branch. Our empirical findings indicate that branching with 10 variations per game provides the best performance-exploration balance. Overall, our end-to-end results show an improved sample efficiency over the baseline by 58.5\% on 9x9 Go in the early stage of training and by 47.3\% on 19x19 Go in the late stage of training.

Deep Learning · Attention Mechanisms

Enzhe Lu, Zhejun Jiang, Jingyuan Liu, Yulun Du, Tao Jiang, Chao Hong, Shaowei Liu, Weiran He, Enming Yuan, Yuzhi Wang 等

Scaling the effective context length is essential for advancing large language models (LLMs) toward artificial general intelligence (AGI). However, the quadratic increase in computational complexity inherent in traditional attention mechanisms presents a prohibitive overhead. Existing approaches either impose strongly biased structures, such as sink or window attention which are task-specific, or radically modify the attention mechanism into linear approximations, whose performance in complex reasoning tasks remains inadequately explored. In this work, we propose a solution that adheres to the ``less structure'' principle, allowing the model to determine where to attend autonomously, rather than introducing predefined biases. We introduce Mixture of Block Attention (MoBA), an innovative approach that applies the principles of Mixture of Experts (MoE) to the attention mechanism. This novel architecture demonstrates superior performance on long-context tasks while offering a key advantage: the ability to seamlessly transition between full and sparse attention, enhancing efficiency without the risk of compromising performance. MoBA has already been deployed to handle actual production workloads with long-context requirements, demonstrating significant advancements in efficient attention computation for LLMs. Our code is available at https://github.com/MoonshotAI/MoBA.

Computer Vision · Vision Models & Multimodal

Zirui Wang, Jiayi Zhang, Tianwei Guan, Yuhan Zhou, Xingyuan Li, Minjing Dong, Jinyuan Liu

Image fusion is a fundamental and important task in computer vision, aiming to combine complementary information from different modalities to fuse images. In recent years, diffusion models have made significant developments in the field of image fusion. However, diffusion models often require complex computations and redundant inference time, which reduces the applicability of these methods. To address this issue, we propose RFfusion, an efficient one-step diffusion model for image fusion based on Rectified Flow. We incorporate Rectified Flow into the image fusion task to straighten the sampling path in the diffusion model, achieving one-step sampling without the need for additional training, while still maintaining high-quality fusion results. Furthermore, we propose a task-specific variational autoencoder (VAE) architecture tailored for image fusion, where the fusion operation is embedded within the latent space to further reduce computational complexity. To address the inherent discrepancy between conventional reconstruction-oriented VAE objectives and the requirements of image fusion, we introduce a two-stage training strategy. This approach facilitates the effective learning and integration of complementary information from multi-modal source images, thereby enabling the model to retain fine-grained structural details while significantly enhancing inference efficiency. Extensive experiments demonstrate that our method outperforms other state-of-the-art methods in terms of both inference speed and fusion quality.

Computer Vision · Vision Models & Multimodal

Xiyao Wang, Zhengyuan Yang, Chao Feng, Yuhang Zhou, Xiaoyu Liu, Yongyuan Liang, Ming Li, Ziyi Zang, Linjie Li, Chung-Ching Lin 等

Reinforcement learning (RL) has shown great effectiveness for fine-tuning large language models (LLMs) using tasks that are challenging yet easily verifiable, such as math reasoning or code generation. However, extending this success to visual perception in vision–language models (VLMs) has been impeded by the scarcity of vision-centric tasks that are simultaneously challenging and unambiguously verifiable. To this end, we introduce \textbf{ViCrit} (\textit{Visual Caption Hallucination Critic}), an RL proxy task that trains VLMs to localize a subtle, synthetic visual hallucination injected into paragraphs of human-written image captions. Starting from a 200-word captions, we inject a single, subtle visual description error—altering a few words on objects, attributes, counts, or spatial relations—and task the model to pinpoint the corrupted span given the image and the modified caption. This formulation preserves the full perceptual difficulty while providing a binary, exact-match reward that is easy to compute and unambiguous. Models trained with the \textbf{ViCrit Task} exhibit substantial gains across a variety of VL benchmarks. Crucially, the improvements transfer beyond natural-image training data to abstract image reasoning and visual math, showing promises of learning to perceive rather than barely memorizing seen objects. To facilitate evaluation, we further introduce \textbf{ViCrit-Bench}, a category-balanced diagnostic benchmark that systematically probes perception errors across diverse image domains and error types. Together, our results demonstrate that fine-grained hallucination criticism is an effective and generalizable objective for enhancing visual perception in VLMs.

Computer Vision · Segmentation

Xinlong Li, Di Lin, Shaoyiyi Gao, Jiaxin Li, Ruonan Liu, Qing Guo

Open-vocabulary part segmentation (OVPS) struggles with structurally connected boundaries due to the inherent conflict between continuous image features and discrete classification mechanism. To address this, we propose PBAPS, a novel training-free framework specifically designed for OVPS. PBAPS leverages structural knowledge of object-part relationships to guide a progressive segmentation from objects to fine-grained parts. To further improve accuracy at challenging boundaries, we introduce a Boundary-Aware Refinement (BAR) module that identifies ambiguous boundary regions by quantifying classification uncertainty, enhances the discriminative features of these ambiguous regions using high-confidence context, and adaptively refines part prototypes to better align with the specific image. Experiments on Pascal-Part-116, ADE20K-Part-234, PartImageNet demonstrate that PBAPS significantly outperforms state-of-the-art methods, achieving 46.35\% mIoU and 34.46\% bIoU on Pascal-Part-116. Our code is available at https://github.com/TJU-IDVLab/PBAPS.

Theory · Learning Theory

Tianyu Pan, Mengdi Zhu, Alexa Cole, Ronald Wilson, Damon Woodard

Multimodal learning systems often struggle in non-stationary environments due to concept drift, where changing data distributions can degrade performance. Modality-specific drifts and the lack of mechanisms for continuous, stable adaptation compound this challenge. This paper introduces LS-OGD, a novel adaptive control framework for robust multimodal learning in the presence of concept drift. LS-OGD uses an online controller that dynamically adjusts the model's learning rate and the fusion weights between different data modalities in response to detected drift and evolving prediction errors. We prove that under bounded drift conditions, the LS-OGD system's prediction error is uniformly ultimately bounded and converges to zero if the drift ceases. Additionally, we demonstrate that the adaptive fusion strategy effectively isolates and mitigates the impact of severe modality-specific drift, thereby ensuring system resilience and fault tolerance. These theoretical guarantees establish a principled foundation for developing reliable and continuously adapting multimodal learning systems.

Deep Learning · Theory

Jiaoda Li, Ryan Cotterell

Transformer-based language models (LMs) have achieved widespread empirical success, but their theoretical expressive power remains only partially understood. In this work, we analyze a restricted idealization of fixed-precision transformers with strict future masking, soft attention, and no positional encodings. We establish that this class of models is exactly as expressive as a specific fragment of linear temporal logic that contains only a single temporal operator: the $\texttt{past}$ operator. We further connect this fragment to established classes in formal language theory, automata theory, and algebra, yielding a unified framework for understanding transformer expressivity under this idealization. Finally, we present empirical results that align closely with our theory: transformers trained on languages within their characterized expressive capacity generalize reliably across sequence lengths, while they consistently fail to generalize on languages beyond it.

Kangrui Wang, Pingyue Zhang, Zihan Wang, Yaning Gao, Linjie Li, Qineng Wang, Hanyang Chen, Yiping Lu, Zhengyuan Yang, Lijuan Wang 等

A major challenge in training VLM agents, compared to LLM agents, is that states shift from simple texts to complex visual observations, which introduces partial observability and demands robust world modeling. We ask: can VLM agents build internal world models through explicit visual state reasoning? In this work, we architecturally enforce and reward VLM agent’s reasoning process via reinforcement learning (RL), formulating the problem as a Partially Observable Markov Decision Process (POMDP). We demonstrate that structuring agent’s reasoning into StateEstimation (“what is the current state?”) and TransitionModeling (“what is next?”) is critical by studying five reasoning strategies. Investigating how agents should ground visual states and represent these internal beliefs, we reveal the optimal representations are task-dependent: Natural Language excels at capturing semantic relationships for general tasks, while Structured formats are essential for high-precision manipulation. These insights motivate our approach to reward shaping and credit assignment. We leverage a WorldModeling Reward to densely rewards the agent’s turn-by-turn state predictions, while our Bi-Level General Advantage Estimation (Bi-Level GAE) enables turn-aware credit assignment. Through such world model reasoning, we enable a 3B model to achieve performance of 0.82 on a set of five diverse agent tasks, nearly 3× improvement over its untrained counterpart (0.21) and surpassing proprietary reasoning models like GPT-5 (0.75), Gemini 2.5 Pro (0.67) and Claude 4.5 (0.62). All experiments are supported by our VAGEN framework, a scalable system for training and analyzing multi-turn VLM agents across diverse visual environments

Probabilistic Methods

Amber Hu, Henry Smith, Scott Linderman

Latent stochastic differential equation (SDE) models are important tools for the unsupervised discovery of dynamical systems from data, with applications ranging from engineering to neuroscience. In these complex domains, exact posterior inference of the latent state path is typically intractable, motivating the use of approximate methods such as variational inference (VI). However, existing VI methods for inference in latent SDEs often suffer from slow convergence and numerical instability. Here, we propose SDE Inference via Natural Gradients (SING), a method that leverages natural gradient VI to efficiently exploit the underlying geometry of the model and variational posterior. SING enables fast and reliable inference in latent SDE models by approximating intractable integrals and parallelizing computations in time. We provide theoretical guarantees that SING will approximately optimize the intractable, continuous-time objective of interest. Moreover, we demonstrate that better state inference enables more accurate estimation of nonlinear drift functions using, for example, Gaussian process SDE models. SING outperforms prior methods in state inference and drift estimation on a variety of datasets, including a challenging application to modeling neural dynamics in freely behaving animals. Altogether, our results illustrate the potential of SING as a tool for accurate inference in complex dynamical systems, especially those characterized by limited prior knowledge and non-conjugate structure.

Reinforcement Learning · Everything Else

Thomas Foster, Anya Sims, Johannes Forkel, Jakob Foerster

Reinforcement learning is widely adopted in post-training large language models, especially for reasoning-style tasks such as maths questions. However, as we show, most existing methods will provably fail to learn from questions that are too hard, where the model always fails, or too easy, where the model always succeeds. Much human effort is therefore spent continually producing datasets of questions of a suitable difficulty for state-of-the-art models. Given this, we consider how to algorithmically identify questions that allow for maximally efficient training. We introduce a method, LILO (Learnability Improves LLMs Optimally), that prioritises training on questions with high variance of success, known as learnability, and we provide theory proving LILO maximises the expected improvement of the model. We run a wide range of experiments over multiple base models, algorithms and reasoning datasets to demonstrate that LILO consistently improves final test accuracy and can yield a 3x reduction in the number of training steps required to reach it. We explore how questions with high learnability can be efficiently identified, and discuss how learnability can be scaled to produce LLM agents that autonomously and open-endedly expand the frontier of human knowledge.

Applications · Language, Speech and Dialog

Xingang Guo, Yaxin Li, XiangYi Kong, YILAN JIANG, Xiayu Zhao, Zhihua Gong, Yufan Zhang, Daixuan Li, Tianle Sang, Beixiao Zhu 等

Modern engineering, spanning electrical, mechanical, aerospace, civil, and computer disciplines, stands as a cornerstone of human civilization and the foundation of our society. However, engineering design poses a fundamentally different challenge for large language models (LLMs) compared with traditional textbook-style problem solving or factual question answering. Although existing benchmarks have driven progress in areas such as language understanding, code synthesis, and scientific problem solving, real-world engineering design demands the synthesis of domain knowledge, navigation of complex trade-offs, and management of the tedious processes that consume much of practicing engineers' time. Despite these shared challenges across engineering disciplines, no benchmark currently captures the unique demands of engineering design work. In this work, we introduce EngDesign, an Engineering Design benchmark that evaluates LLMs' abilities to perform practical design tasks across nine engineering domains. Unlike existing benchmarks that focus on factual recall or question answering, EngDesign uniquely emphasizes LLMs' ability to synthesize domain knowledge, reason under constraints, and generate functional, objective-oriented engineering designs. Each task in EngDesign represents a real-world engineering design problem, accompanied by a detailed task description specifying design goals, constraints, and performance requirements. EngDesign pioneers a simulation-based evaluation paradigm that moves beyond textbook knowledge to assess genuine engineering design capabilities and shifts evaluation from static answer checking to dynamic, simulation-driven functional verification, marking a crucial step toward realizing the vision of engineering Artificial General Intelligence (AGI).