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Deep Learning · Everything Else

Cristian D. Paduraru, Antonio Barbalau, Radu Filipescu, Andrei Nicolicioiu, Elena Burceanu

Current methods for detecting spurious correlations rely on data splits or error patterns, leaving many harmful shortcuts invisible when counterexamples are absent. We introduce BEE (Bridging Explainability and Embeddings), a framework that shifts the focus from model predictions to the weight space and embedding geometry underlying decisions. By analyzing how fine-tuning perturbs pretrained representations, BEE uncovers spurious correlations that remain hidden from conventional evaluation pipelines. We use linear probing as a transparent diagnostic lens, revealing spurious features that not only persist after full fine-tuning but also transfer across diverse state-of-the-art models. Our experiments cover numerous datasets and domains: vision (Waterbirds, CelebA, ImageNet-1k), language (CivilComments, MIMIC-CXR medical notes), and multiple embedding families (CLIP, CLIP-DataComp.XL, mGTE, BLIP2, SigLIP2). BEE consistently exposes spurious correlations: from concepts that slash the ImageNet accuracy by up to 95\%, to clinical shortcuts in MIMIC-CXR notes that induce dangerous false negatives. Together, these results position BEE as a general and principled tool for diagnosing spurious correlations in weight space, enabling principled dataset auditing and more trustworthy foundation models. The source code is publicly available at https://github.com/bit-ml/bee.

Deep Learning · Generative Models and Autoencoders

Saumya Gupta, Scott Biggs, Moritz Laber, Zohair Shafi, Robin Walters, Ayan Paul

Building efficient and effective generative models for neural network weights has been a research focus of significant interest that faces challenges posed by the high-dimensional weight spaces of modern neural networks and their symmetries. Several prior generative models are limited to generating partial neural network weights, particularly for larger models, such as ResNet and ViT. Those that do generate complete weights struggle with generation speed or require finetuning of the generated models. In this work, we present \ours, a Flow Matching model that operates directly in weight space to generate diverse and high-accuracy neural network weights for a variety of architectures, neural network sizes, and data modalities. The neural networks generated by \ours do not require fine-tuning to perform well and can scale to large networks. We apply Git Re-Basin and TransFusion for neural network canonicalization in the context of generative weight models to account for the impact of neural network permutation symmetries and to improve generation efficiency for larger model sizes. The generated networks excel at transfer learning, and ensembles of hundreds of neural networks can be generated in minutes, far exceeding the efficiency of diffusion-based methods. DeepWeightFlow models pave the way for more efficient and scalable generation of diverse sets of neural networks.

Applications · Genetics, Cell Biology, Health, etc

Yihang Xiao, Jinyi Liu, YAN ZHENG, Shaoqing Jiao, Jianye Hao, Xiaohan Xie, Limingzhi, Ruitao Wang, Fei Ni, Yuxiao Li 等

Single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics (ST) data analysis are pivotal for advancing biological research, enabling precise characterization of cellular heterogeneity. However, existing analysis approaches require extensive manual programming and complex tool integration, posing significant challenges for researchers. To address this, we introduce CellAgent, an autonomous, LLM-driven approach that performs end-to-end scRNA-seq and spatial transcriptomics data analysis through natural language interactions. CellAgent employs a multi-agent hierarchical decision-making framework, simulating a “deep-thinking” workflow to ensure that analytical steps are logically coherent and aligned with the overarching research goal. To further enhance its capabilities, we develop sc-Omni, a high-performance, expert-curated toolkit that consolidates essential tools for scRNA-seq and spatial transcriptomics analysis. Additionally, we introduce a self-reflective optimization mechanism, enabling automated, iterative refinement of results through specialized evaluation methods, effectively replacing traditional manual assessments. Benchmarking against human experts demonstrates that CellAgent achieves significant improvement in efficiency across multiple downstream applications while maintaining excellent performance comparable to existing approaches and preserving natural language interactions. By translating high-level scientific questions into optimized computational workflows, CellAgent represents a step toward a new, more accessible paradigm in bioinformatics, allowing researchers to perform complex data analyses autonomously. In lowering technical barriers, CellAgent serves to advance the democratization of the scientific discovery process in genomics.

Wei Ju, Siyu Yi, Kangjie Zheng, Yifan Wang, Ziyue Qiao, Li Shen, Yongdao Zhou, Xiaochun Cao, Jiancheng Lv

Graph clustering is a fundamental task in data analysis, aiming at grouping nodes with similar characteristics in the graph into clusters. This problem has been widely explored using graph neural networks (GNNs) due to their ability to leverage node attributes and graph topology for effective cluster assignments. However, representations learned through GNNs typically struggle to capture global relationships between nodes via local message-passing mechanisms. Moreover, the redundancy and noise inherently present in graph data may easily result in node representations lacking compactness and robustness. To address these issues, we propose a conjoint framework CoCo, which captures compactness and consistency in the learned node representations for deep graph clustering. Technically, our CoCo leverages graph convolutional filters to learn robust node representations from both local and global views, and then encodes them into low-rank compact embeddings, thus effectively removing the redundancy and noise as well as uncovering the intrinsic underlying structure. To further enrich the node semantics, we develop a consistency learning strategy based on compact embeddings to facilitate knowledge transfer from the two perspectives. Our experimental results indicate that our CoCo outperforms state-of-the-art counterparts on various datasets. The code is available at https://github.com/juweipku/CoCo.

Social Aspects · Fairness, Equity, Justice and Safety

Jianwei Li, Jung-Eun Kim

As large language models (LLMs) are overwhelmingly more and more integrated into various applications, ensuring they generate safe responses is a pressing need. Previous studies on alignment have largely focused on general instruction-following but have often overlooked the distinct properties of safety alignment, such as the brittleness of safety mechanisms. To bridge the gap, we propose the Superficial Safety Alignment Hypothesis (SSAH), which posits that safety alignment teaches an otherwise unsafe model to choose the correct reasoning direction - fulfill or refuse users' requests - interpreted as an implicit binary classification task. Through SSAH, we hypothesize that only a few essential components can establish safety guardrails in LLMs. We successfully identify four types of attribute-critical components: Safety Critical Unit (SCU), Utility Critical Unit (UCU), Complex Unit (CU), and Redundant Unit (RU). Our findings show that freezing certain safety-critical components during fine-tuning allows the model to retain its safety attributes while adapting to new tasks. Similarly, we show that leveraging redundant units in the pre-trained model as an "alignment budget" can effectively minimize the alignment tax while achieving the alignment goal. All considered, this paper concludes that the atomic functional unit for safety in LLMs is at the neuron level and underscores that safety alignment should not be complicated.

Reinforcement Learning · Deep RL

Yijun Tian, Shaoyu Chen, Zhichao Xu, Yawei Wang, Jinhe Bi, Peng Han, Wei Wang

The development of state-of-the-art large language models is commonly understood as a two-stage process involving pre-training and post-training. We point out the need for an additional intermediate stage called reinforcement mid-training with potential for strong performance gains. In this paper, we formally define the problem and identify three key challenges: (1) inefficient training due to excessive reasoning steps, (2) disregard of the imbalanced token entropy distribution, and (3) underutilization of token information. To address these challenges, we propose RMT, a framework for efficient, adaptive, and unified reinforcement mid-training with various innovative components. In particular, we first introduce a dynamic token budget mechanism that constrains unnecessary reasoning steps and mitigates model overthinking. Next, we design a curriculum-based adaptive sampling method that fosters a progressive learning trajectory from easy to hard tokens. Finally, we present a dual training strategy that combines reinforcement learning with next-token prediction, ensuring targeted learning on key tokens and full exploitation of all token information. Extensive experiments demonstrate the superiority of RMT over state-of-the-art methods, achieving up to +64.91% performance improvement with only 21% of the reasoning length in language modeling. We also show that checkpoints obtained after reinforcement mid-training can benefit the subsequent post-training, yielding up to +18.76% improvement in the mathematical domain.

Applications · Climate

Changhoon Song, Teng-Yuan Chang, Youngjoon Hong

Accurate forecasting of extreme weather events such as heavy rainfall or storms is critical for risk management and disaster mitigation. Although high-resolution radar observations have spurred extensive research on nowcasting models, precipitation nowcasting remains particularly challenging due to pronounced spatial locality, intricate fine-scale rainfall structures, and variability in forecasting horizons. While recent diffusion-based generative ensembles show promising results, they are computationally expensive and unsuitable for real-time applications. In contrast, deterministic models are computationally efficient but remain biased toward normal rainfall. Furthermore, the benchmark datasets commonly used in prior studies are themselves skewed--either dominated by ordinary rainfall events or restricted to extreme rainfall episodes--thereby hindering general applicability in real-world settings. In this paper, we propose exPreCast, an efficient deterministic framework for generating finely detailed radar forecasts, and introduce a newly constructed balanced radar dataset from the Korea Meteorological Administration (KMA), which encompasses both ordinary precipitation and extreme events. Our model integrates local spatiotemporal attention, a texture-preserving cubic dual upsampling decoder, and a temporal extractor to flexibly adjust forecasting horizons. Experiments on established benchmarks (SEVIR and MeteoNet) as well as on the balanced KMA dataset demonstrate that our approach achieves state-of-the-art performance, delivering accurate and reliable nowcasts across both normal and extreme rainfall regimes.

Applications · Genetics, Cell Biology, Health, etc

Heming Zhang, Di Huang, Wenyu Li, Michael Province, Yixin Chen, Philip Payne, Fuhai Li

In precision medicine, quantitative multi-omic features, topological context, and textual biological knowledge play vital roles in identifying disease-critical signaling pathways and targets, guiding the discovery of novel therapeutics and effective treatment strategies. Existing pipelines capture only one or two of these—numerical omics ignore topological context, text-centric LLMs lack quantitative grounded reasoning, and graph-only models underuse rich node semantics and the generalization power of LLMs—thereby limiting mechanistic interpretability. Although Process Reward Models (PRMs) aim to guide reasoning in LLMs, they remain limited by coarse step definitions, unreliable intermediate evaluation, and vulnerability to reward hacking with added computational cost. These gaps motivate jointly integrating quantitative multi-omic signals, topological structure with node annotations, and literature-scale text via LLMs, using subgraph reasoning as the principle bridge linking numeric evidence, topological knowledge and language context. To resolve this challenge, we propose GALAX (Graph Augmented LAnguage model with eXplainability), an innovative framework that integrates pretrained Graph Neural Networks (GNNs) into Large Language Models (LLMs) via reinforcement learning guided by a Graph Process Reward Model (GPRM), which generates disease-relevant subgraphs in a step-wise manner initiated by an LLM and iteratively evaluated by a pretrained GNN and schema-based rule check, enabling process-level supervision without explicit labels. As an application, we also introduced Target-QA, a benchmark combining CRISPR-identified targets, multi-omic profiles, and biomedical graph knowledge across diverse cancer cell lines, which enables GNN pretraining for supervising step-wise graph construction and supports long-context reasoning over text-numeric graphs (TNGs), providing a scalable and biologically grounded framework for explainable, reinforcement-guided subgraph reasoning toward reliable and interpretable target and pathway discovery in precision medicine.

Theory · Everything Else

Mehran Shakerinava, Behnoush Khavari, Siamak Ravanbakhsh, Sarath Chandar

State-Space Models (SSMs) have recently been shown to achieve strong empirical performance on a variety of long-range sequence modeling tasks while remaining efficient and highly-parallelizable. However, the theoretical understanding of their expressive power remains limited. In this work, we study the expressivity of input-Dependent Complex-valued Diagonal (DCD) SSMs on sequential state-tracking tasks. We show that single-layer DCD SSMs cannot express state-tracking of any non-Abelian group at finite precision. More generally, we show that $k$-layer DCD SSMs can express state-tracking of a group if and only if that group has a subnormal series of length $k$, with Abelian factors. That is, we identify the precise expressivity range of $k$-layer DCD SSMs within the solvable groups. Empirically, we find that multi-layer models often fail to learn state-tracking for non-Abelian groups, highlighting a gap between expressivity and learnability.

Reinforcement Learning · Batch/Offline

Jinmei Liu, Fuhong Liu, Zhenhong Sun, Jianye Hao, Huaxiong Li, Bo Wang, Daoyi Dong, Chunlin Chen, Zhi Wang

Recent advancements in language models have demonstrated remarkable in-context learning abilities, prompting the exploration of in-context reinforcement learning (ICRL) to extend the promise to decision domains. Due to involving more complex dynamics and temporal correlations, existing ICRL approaches may face challenges in learning from suboptimal trajectories and achieving precise in-context inference. In the paper, we propose **S**calable **I**n-**C**ontext **Q**-**L**earning (**S-ICQL**), an innovative framework that harnesses dynamic programming and world modeling to steer ICRL toward efficient reward maximization and task generalization, while retaining the scalability and stability of supervised pretraining. We design a prompt-based multi-head transformer architecture that simultaneously predicts optimal policies and in-context value functions using separate heads. We pretrain a generalized world model to capture task-relevant information, enabling the construction of a compact prompt that facilitates fast and precise in-context inference. During training, we perform iterative policy improvement by fitting a state value function to an upper-expectile of the Q-function, and distill the in-context value functions into policy extraction using advantage-weighted regression. Extensive experiments across a range of discrete and continuous environments show consistent performance gains over various types of baselines, especially when learning from suboptimal data. Our code is available at [https://github.com/NJU-RL/SICQL](https://github.com/NJU-RL/SICQL).

Applications · Chemistry and Drug Discovery

Nhat Khang Ngo, Siamak Ravanbakhsh

We present an empirical study in the geometric task of learning interatomic potentials, which shows equivariance matters even more at larger scales; we show a clear power-law scaling behaviour with respect to data, parameters and compute with “architecture-dependent exponents”. In particular, we observe that equivariant architectures, which leverage task symmetry, scale better than non-equivariant models. Moreover, among equivariant architectures, higher-order representations translate to better scaling exponents. Our analysis also suggests that for computeoptimal training, the data and model sizes should scale in tandem regardless of the architecture. At a high level, these results suggest that, contrary to common belief, we should not leave it to the model to discover fundamental inductive biases such as symmetry, especially as we scale, because they change the inherent difficulty of the task and its scaling laws.

Deep Learning · Graph Neural Networks

Shao-En Lin, Ming-Yi Hong, Miao-Chen Chiang, Chih-Yu Wang, Che Lin

Heterogeneous Information Networks (HINs) provide a powerful framework for modeling multi-typed entities and relations, typically defined under a fixed schema. Yet, most research assumes this structure is given, overlooking the fact that alternative designs can emphasize different aspects of the data and substantially influence downstream performance. As a theoretical foundation for such designs, we introduce the principle of entity-attribute duality: attributes can be atomized as entities with their associated relations, while entities can, in turn, serve as attributes of others. This principle motivates atomic HIN, a canonical representation that makes all modeling choices explicit and achieves maximal expressiveness. Building on this foundation, we propose a systematic framework for task-specific schema refinement. Within this framework, we demonstrate that widely used benchmarks correspond to heuristic refinements of the atomic HIN—often far from optimal. Across eight datasets, refinement alone enables a simplified Relational GCN (sRGCN) to achieve state-of-the-art performance on node- and link-level tasks, with further gains from advanced HGNNs. These results highlight schema design as a key dimension in heterogeneous graph modeling. By releasing the atomic HINs, searched schemas, and refinement framework, we enable principled benchmarking and open the way for future work on schema-aware learning, automated structure discovery, and next-generation HGNNs. Our code is available at: https://github.com/ntuidssplab/AtomHIN.

Deep Learning · Generative Models and Autoencoders

Ruby Shrestha, Ajay Gopi, Casey Meisenzahl, Bipin Lekhak, Linwei Wang

Attribute correlations in the training data will compromise the ability of a deep generative model (DGM) to synthesize images with under-represented attribute combinations ($\textit{i.e.,}$ minority samples). Existing approaches mitigate this by data re-sampling to remove attribute correlations seen by the DGM, using a classifier to provide $\textit{pseudo-supervision}$ on generated counterfactual samples, or incorporating inductive bias to explicitly decompose the generation into independent sub-mechanisms. We present ProReGen, a $\textit{progressive residual generation}$ approach inspired by the classical Robinson's transformation, to partial out from an image attribute $\mathbf{x}_2$ its component $m(\mathbf{x}_1)$ that is predictable by other image attributes $\mathbf{x}_1$, and the residual $\gamma = \mathbf{x}_2 - m(\mathbf{x}_1)$ that is not. This simplifies the problem of learning a DGM $g(\mathbf{x}_1, \mathbf{x}_2)$ conditioned on correlated inputs, to learning $\tilde{g}(\mathbf{x}_1, \gamma)$ conditioned on orthogonal inputs. It further allows us to progressively learn $\tilde{g}$ by first shifting the burden to abundant majority samples to learn $\tilde{g}(\mathbf{x}_1, \gamma = 0)$, and then expanding it with additional layers $g\_{\text{res}}$ to resolve its difference to $\tilde{g}(\mathbf{x}_1, \gamma)$ using residual attribute $\gamma$ on limited minority samples. On three benchmark datasets with curated varying strengths of attribute correlation and one dataset with natural attribute correlation, we demonstrate that ProReGen---with input orthogonalization and progressive residual learning---improved the correctness of minority generations compared to existing strategies.

General Machine Learning · Causality

Mathieu Chevalley, Arash Mehrjou, Patrick Schwab

We investigate theoretical guarantees for the \emph{false-negative rate} (FNR)—the fraction of true causal edges whose orientation is not recovered, under single-variable random interventions and an $\epsilon$-interventional faithfulness assumption that accommodates latent confounding. For sparse Erdős--Rényi directed acyclic graphs, where the edge probability scales as $p_e = \Theta(1/d)$, we show that the FNR concentrates around its mean at rate $O\bigl(\tfrac{\log d}{\sqrt d}\bigr)$, implying that large deviations above the expected error become exponentially unlikely as dimensionality increases. This concentration ensures that derived upper bounds hold with high probability in large-scale settings. Extending the analysis to generalized Barabási--Albert graphs reveals an even stronger phenomenon: when the degree exponent satisfies $\gamma > 3$, the deviation width scales as $O\bigl(d^{\beta - \frac{1}{2}}\bigr)$ with $\beta = 1/(\gamma - 1) < \frac{1}{2}$, and hence vanishes in the limit. This demonstrates that heterogeneous, heavy-tailed degree structures commonly observed in empirical networks can intrinsically regularize causal discovery by reducing variability in orientation error. These finite-dimension results provide the first dimension-adaptive, faithfulness-robust guarantees for causal structure recovery, and challenge the intuition that high dimensionality and network heterogeneity necessarily hinder accurate discovery. Our simulation results corroborate these theoretical predictions, showing that the FNR indeed concentrates and often vanishes in practice as dimensionality grows.

Optimization · Learning for Optimization

Yile Chen, Zeyi Wen, Jian Chen, Jin Huang

Optimizers are critical for training deep neural networks. Existing training processes rely on a single static optimizer (e.g., SGD) or a simple hybrid of two optimizers, which miss the opportunity to exploit evolving dynamics in different training states, degrading model quality and convergence. In this paper, we propose a novel dynamic optimizer switching method called **D**ynamic **O**ptimizer **I**nterleaving **T**raining (DOIT) method, which builds surrogate models to predict different optimizers' performance from current parameter states. DOIT uses an acquisition function that combines the results from surrogate models with transferability assessments and process information to select a suitable optimizer for the subsequent training. Experiments on various models and tasks (e.g., image and text classification, machine translation, and object detection) show that DOIT effectively enhances the training, achieving faster convergence (i.e., 2\% to 10\% faster) and higher accuracy (i.e., 1\% to 3\% improvement). Additional independent experiments and case studies further validate DOIT's effectiveness.

Computer Vision · Vision Models & Multimodal

Christopher Hoang, Mengye Ren

Object recognition and motion understanding are key components of perception that complement each other. While self-supervised learning methods have shown promise in their ability to learn from unlabeled data, they have primarily focused on obtaining rich representations for either recognition or motion rather than both in tandem. On the other hand, latent dynamics modeling has been used in decision making to learn latent representations of observations and their transformations over time for control and planning tasks. In this work, we present Midway Network, a new self-supervised learning architecture that is the first to learn strong visual representations for both object recognition and motion understanding solely from natural videos, by extending latent dynamics modeling to this domain. Midway Network leverages a _midway_ top-down path to infer motion latents between video frames, as well as a dense forward prediction objective and hierarchical structure to tackle the complex, multi-object scenes of natural videos. We demonstrate that after pretraining on two large-scale natural video datasets, Midway Network achieves strong performance on both semantic segmentation and optical flow tasks relative to prior self-supervised learning methods. We also show that Midway Network's learned dynamics can capture high-level correspondence via a novel analysis method based on forward feature perturbation. Code is provided at https://github.com/agentic-learning-ai-lab/midway-network.

Applications · Neuroscience, Cognitive Science

Sam Gijsen, Marc-Andre Schulz, Kerstin Ritter

The development of foundation models for functional magnetic resonance imaging (fMRI) time series holds significant promise for predicting phenotypes related to disease and cognition. Current models, however, are often trained using a mask-and-reconstruct objective on small brain regions. This focus on low-level information leads to representations that are sensitive to noise and temporal fluctuations, necessitating extensive fine-tuning for downstream tasks. We introduce Brain-Semantoks, a self-supervised framework designed specifically to learn abstract representations of brain dynamics. Its architecture is built on two core innovations: a semantic tokenizer that aggregates noisy regional signals into robust tokens representing functional networks, and a self-distillation objective that enforces representational stability across time. We show that this objective is stabilized through a novel training curriculum, ensuring the model robustly learns meaningful features from low signal-to-noise time series. We demonstrate that learned representations enable strong performance on a variety of downstream tasks even when only using a linear probe. Furthermore, we provide comprehensive scaling analyses indicating more unlabeled data reliably results in out-of-distribution performance gains without domain adaptation.

Wangduo Xie, Matthew Blaschko

Computed Tomography (CT) plays a vital role in inspecting the internal structures of industrial objects. Furthermore, achieving high-quality CT reconstruction from sparse views is essential for reducing production costs. While classic implicit neural networks have shown promising results for sparse reconstruction, they are unable to leverage shape priors of objects. Motivated by the observation that numerous industrial objects exhibit rectangular structures, we propose a novel \textbf{N}eural \textbf{A}daptive \textbf{B}inning (\textbf{NAB}) method that effectively integrates rectangular priors into the reconstruction process. Specifically, our approach first maps coordinate space into a binned vector space. This mapping relies on an innovative binning mechanism based on differences between shifted hyperbolic tangent functions, with our extension enabling rotations around the input-plane normal vector. The resulting representations are then processed by a neural network to predict CT attenuation coefficients. This design enables end-to-end optimization of the encoding parameters---including position, size, steepness, and rotation---via gradient flow from the projection data, thus enhancing reconstruction accuracy. By adjusting the smoothness of the binning function, NAB can generalize to objects with more complex geometries. This research provides a new perspective on integrating shape priors into neural network-based reconstruction. Extensive experiments demonstrate that NAB achieves superior performance on two industrial datasets. It also maintains robust on medical datasets when the binning function is extended to more general expression. The code is available at \url{https://github.com/Wangduo-Xie/NAB_CT_reconstruction}.

Shibo Hong, jiahao ying, Haiyuan Liang, Mengdi Zhang, Jun Kuang, Jiazheng Zhang, Yixin Cao

Evaluating open-ended outputs of Multimodal Large Language Models has become a bottleneck as model capabilities, task diversity, and modality rapidly expand. Existing ``MLLM-as-a-Judge'' evaluators, though promising, remain constrained to specific tasks and aspects (i.e., specific evaluation criteria such as fluency for text and image quality for images). In this paper, we argue that, on one hand, based on the interconnected nature of criteria, learning specific aspects can generalize to unseen aspects; on the other hand, jointly learning to assess multiple visual criteria and tasks may foster a synergistic effect. To this end, we propose UFEval, the first unified fine-grained evaluator with task and aspect generalization for four evaluation tasks --- Natural Language Generation, Image Understanding, Image Generation, and Interleaved Text-and-Image Generation. However, training such a unified evaluator is hindered by the lack of a large-scale, multi-modal, and aspect-level resource. To address this gap, we introduce FRABench, a comprehensive fine-grained evaluation dataset. Specifically, (1) We first construct a hierarchical aspect taxonomy encompassing 112 distinct aspects across the aforementioned four tasks. (2) Based on this taxonomy, we create FRABench, comprising 60.4k pairwise samples with 325k evaluation labels obtained from a combination of human and GPT-4o annotations. (3) Finally, leveraging FRABench, we develop UFEval, a unified fine-grained evaluator. Experiments show that learning on specific aspects enables UFEval to generalize to unseen aspects, and joint learning to assess diverse visual tasks and aspects can lead to substantial mutual benefits.

Applications · Everything Else

Hao Tan, jun lan, Zichang Tan, Senyuan Shi, Ajian Liu, Chuanbiao Song, Huijia Zhu, Weiqiang Wang, Jun Wan, Zhen Lei

Deepfake detection remains a formidable challenge due to the evolving nature of fake content in real-world scenarios. However, existing benchmarks suffer from severe discrepancies from industrial practice, typically featuring homogeneous training sources and low-quality testing images, which hinder the practical usage of current detectors. To mitigate this gap, we introduce **HydraFake**, a dataset that contains diversified deepfake techniques and in-the-wild forgeries, along with rigorous training and evaluation protocol, covering unseen model architectures, emerging forgery techniques and novel data domains. Building on this resource, we propose **Veritas**, a multi-modal large language model (MLLM) based deepfake detector. Different from vanilla chain-of-thought (CoT), we introduce *pattern-aware reasoning* that involves critical patterns such as "planning" and "self-reflection" to emulate human forensic process. We further propose a two-stage training pipeline to seamlessly internalize such deepfake reasoning capacities into current MLLMs. Experiments on HydraFake dataset reveal that although previous detectors show great generalization on cross-model scenarios, they fall short on unseen forgeries and data domains. Our Veritas achieves significant gains across different out-of-domain (OOD) scenarios, and is capable of delivering transparent and faithful detection outputs.