Retrieving targeted pathways in biological knowledge bases, particularly when incorporating wet-lab experimental data, remains a challenging task and often requires downstream analyses and specialized expertise. In this paper, we frame this challenge as a solvable graph learning and explaining task and propose a novel subgraph inference framework, ExPath, that explicitly integrates experimental data to classify various graphs (bio-networks) in biological databases. The links (representing pathways) that contribute more to classification can be considered as targeted pathways. Our framework can seamlessly integrate biological foundation models to encode the experimental molecular data. We propose ML-oriented biological evaluations and a new metric. The experiments involving 301 bio-networks evaluations demonstrate that pathways inferred by ExPath are biologically meaningful, achieving up to 4.5× higher Fidelity+ (necessity) and 14× lower Fidelity- (sufficiency) than explainer baselines, while preserving signaling chains up to 4× longer.
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Neural operators have emerged as a promising paradigm for learning solution operators of partial differential equations (PDEs) directly from data. Existing methods, such as those based on Fourier or graph techniques, make strong assumptions about the structure of the kernel integral operator, assumptions which may limit expressivity. We present SVD-NO, a neural operator that explicitly parameterizes the kernel by its singular-value decomposition (SVD) and then carries out the integral directly in the low-rank basis. Two lightweight networks learn the left and right singular functions, a diagonal parameter matrix learns the singular values, and a Gram-matrix regularizer enforces orthonormality. As SVD-NO approximates the full kernel, it obtains a high degree of expressivity. Furthermore, due to its low-rank structure the computational complexity of applying the operator remains reasonable, leading to a practical system. In extensive evaluations on five diverse benchmark equations, SVD-NO achieves a new state of the art. In particular, SVD-NO provides greater performance gains on PDEs whose solutions are highly spatially variable.
Stochastic Universal Adversarial Perturbations with Fixed Optimization Constraint and Ensured High-probability Transferability
PDF ↗Adversarial perturbations (APs) have become a great concern in image classification tasks. The most challenging branch, universal adversarial perturbations (UAPs), are exploited to fool most of the unseen samples. Such one-to-all perturbations have the merit of transferability, which has strong practical significance. In this paper, we firstly define the transferability gap and the algorithm stability of the UAP algorithm, and prove the relationship between them. In analyzing the UAP algorithm stability, we prove that the convergence domain of existing UAP algorithms with dynamic constraints is excessively small, which degrades the capacity of UAPs. Thus, we further propose a new expected constraint and prove that UAPs in the expected constraint suit any sample in a high probability. Besides, we propose a Stochastic Universal Adversarial Perturbation (SUAP) that involves additive noise and the expected constraint. Finally, by treating the proposed algorithm as a stochastic differential equation, we prove an upper bound of the UAP algorithm stability of SUAP, which decreases exponentially at the beginning and then increases with a sublinear rate to at most a fixed constant. Experimental results show that SUAP is aligned with our analysis.
FinRpt: Dataset, Evaluation System and LLM-based Multi-agent Framework for Equity Research Report Generation
PDF ↗While LLMs have shown great success in financial tasks like stock prediction and question answering, their application in fully automating Equity Research Report generation remains uncharted territory. In this paper, we formulate the Equity Research Report (ERR) Generation task for the first time. To address the data scarcity and the evaluation metrics absence, we present an open-source evaluation benchmark for ERR generation - FinRpt. We frame a Dataset Construction Pipeline that integrates 7 financial data types and produces a high-quality ERR dataset automatically, which could be used for model training and evaluation. We also introduce a comprehensive evaluation system including 11 metrics to assess the generated ERRs. Moreover, we propose a multi-agent framework specifically tailored to address this task, named FinRpt-Gen, and train several LLM-based agents on the proposed datasets using Supervised Fine-Tuning and Reinforcement Learning. Experimental results indicate the data quality and metrics effectiveness of the benchmark FinRpt and the strong performance of FinRpt-Gen, showcasing their potential to drive innovation in the ERR generation field. All code and datasets are publicly available.
Magnitude-Modulated Equivariant Adapter for Parameter-Efficient Fine-Tuning of Equivariant Graph Neural Networks
PDF ↗Pretrained equivariant graph neural networks based on spherical harmonics offer efficient and accurate alternatives to computationally expensive ab-initio methods, yet adapting them to new tasks and chemical environments still requires fine-tuning. Conventional parameter-efficient fine-tuning (PEFT) techniques, such as Adapters and LoRA, typically break symmetry, making them incompatible with those equivariant architectures. ELoRA, recently proposed, is the first equivariant PEFT method. It achieves improved parameter efficiency and performance on many benchmarks. However, the relatively high degrees of freedom it retains within each tensor order can still perturb pretrained feature distributions and ultimately degrade performance. To address this, we present Magnitude-Modulated Equivariant Adapter (MMEA), a novel equivariant fine-tuning method which employs lightweight scalar gating to modulate feature magnitudes on a per-order and per-multiplicity basis. We demonstrate that MMEA preserves strict equivariance and, across multiple benchmarks, consistently improves energy and force predictions to state-of-the-art levels while training fewer parameters than competing approaches. These results suggest that, in many practical scenarios, modulating channel magnitudes is sufficient to adapt equivariant models to new chemical environments without breaking symmetry, pointing toward a new paradigm for equivariant PEFT design.
Biological sequences, including RNAs and proteins, share similarities with natural languages, enabling the application of advanced language models to various biological tasks. However, due to its flexibility and lack of experimental data, RNA is a particularly challenging biological ``language'' compared to other biological sequences like proteins. RNA multiple sequence alignments (MSAs), which align evolutionarily related RNA sequences, can greatly enhance RNA biology modeling, as evidenced by their significant roles in structure prediction and function annotation. This raises the question of whether RNA MSAs can also benefit RNA design, which remains unexplored. This paper introduces RMSAGen, a model comprising RMSA-Encoder and RMSA-Decoder, that leverages MSAs to design functional RNA sequences. RMSA-Encoder effectively extracts MSA features, enhancing performance in functional prediction and solvent accessibility prediction tasks and supporting RMSA-Decoder in accurate RNA generation. RMSAGen can design RNA sequences that effectively bind to target RNA-binding proteins, and the design performance improves with an increasing number of sequences. In addition, the ribozymes designed with structural features by RMSAGen show strong computational metrics and exhibit biological activity during gel electrophoresis. These results highlight the effectiveness of RMSAGen, establishing it as a powerful tool and a new direction for RNA design.
HyperLoad: A Cross-Modality Enhanced Large Language Model-Based Framework for Green Data Center Cooling Load Prediction
PDF ↗The explosive growth of artificial intelligence is exponentially escalating computational demand, inflating data center energy use and carbon emissions, and spurring rapid deployment of green data centers to relieve resource and environmental stress. Achieving sub-minute orchestration of renewables, storage, and loads, while minimizing PUE and lifecycle carbon intensity, hinges on accurate load forecasting. However, existing methods struggle to address small-sample scenarios caused by cold start, load distortion, multi-source data fragmentation, and distribution shifts in green data centers. We introduce HyperLoad, a cross-modality framework that exploits pre-trained large language models (LLMs) to overcome data scarcity. In the Cross-Modality Knowledge Alignment phase, textual priors and time-series attributes are mapped to a common latent space, maximizing the utility of prior knowledge. In the Multi-Scale Feature Modeling phase, domain-aligned priors are injected through adaptive prefix-tuning, enabling rapid scenario adaptation, while an Enhanced Global Interaction Attention mechanism captures cross-device temporal dependencies. The public GreenData dataset is released for benchmarking. Under both data-sufficient and data scarce regimes, HyperLoad consistently surpasses state-of-the-art (SOTA) baselines, demonstrating its practicality for sustainable green data center management.
With the rapid evolution of deepfake technologies and the wide dissemination of digital media, personal privacy is facing increasingly serious security threats. Deepfake proactive forensics, which involves embedding imperceptible watermarks to enable reliable source tracking, serves as a crucial defense against these threats. Although existing methods show strong forensic ability, they rely on an idealized assumption of single watermark embedding, which proves impractical in real-world scenarios. In this paper, we formally define and demonstrate the existence of Multi-Embedding Attacks (MEA) for the first time. When a previously protected image undergoes additional rounds of watermark embedding, the original forensic watermark can be destroyed or removed, rendering the entire proactive forensic mechanism ineffective. To address this vulnerability, we propose a general training paradigm named Adversarial Interference Simulation (AIS). Rather than modifying the network architecture, AIS explicitly simulates MEA scenarios during fine-tuning and introduces a resilience-driven loss function to enforce the learning of sparse and stable watermark representations. Our method enables the model to maintain the ability to extract the original watermark correctly even after a second embedding. Extensive experiments demonstrate that our plug-and-play AIS training paradigm significantly enhances the robustness of various existing methods against MEA.
Generative modeling has transformed many fields, such as language and visual modeling, while its application in financial markets remains under-explored. As the minimal unit within a financial market is an order, order-flow modeling represents a fundamental generative financial task. However, current approaches often yield unsatisfactory fidelity in generating order flow, and their generation lacks controllability, thereby limiting their practical applications. In this paper, we formulate the challenge of controllable financial market generation, and propose a Diffusion Guided Meta Agent (DigMA) model to address it. Specifically, we employ a conditional diffusion model to capture the dynamics of the market state represented by time-evolving distribution parameters of the mid-price return rate and the order arrival rate, and we define a meta agent with financial economic priors to generate orders from the corresponding distributions. Extensive experimental results show that DigMA achieves superior controllability and generation fidelity. Moreover, we validate its effectiveness as a generative environment for downstream high-frequency trading tasks and its computational efficiency.
Single-cell RNA sequencing (scRNA-seq) is essential for decoding tumor heterogeneity. However, pan-cancer research still faces two key challenges: learning discriminative and efficient single-cell representations, and establishing a comprehensive evaluation benchmark. In this paper, we introduce \algoname, a lightweight hybrid neural network that combines the strengths of Transformers and state-space models to achieve a balance between performance and efficiency. \algoname consists of a front-end local-context encoder with shared self-attention layers to capture complex, order-independent gene interactions; and a back-end global sequential feature decoder that efficiently integrates global context using a linear-time state-space model. This modular design preserves the expressive power of Transformers while leveraging the scalability of Mamba to enable transcriptome modeling, effectively capturing both local and global regulatory signals. To enable robust evaluation, we also construct a large-scale pan-cancer single-cell benchmark, \algoname Bench, containing over 3.5 million high-quality cells across 33 cancer subtypes, curated through a rigorous preprocessing pipeline. Experimental results show that \algoname outperforms state-of-the-art models on our pan-cancer benchmark (+4.0\%) and across multiple public tasks, including cell type annotation (+7.4\%), batch integration (+4.0\%) and multi-omics integration (+3.1\%).
Antibody design is critically important in biomedical and therapeutic contexts but remains extremely challenging due to the complexity of antibody sequence–structure relationships and stringent antigen specificity requirements. Traditional computational approaches rely on multi-stage pipelines and often overlook full-atom details (e.g., side-chain conformations) as well as fine-grained geometric features, resulting in limited effectiveness. To overcome these limitations, we propose Dynamic Geometric Equivariant Network (DGENet), an end-to-end full-atom antibody design model that integrates a geometric-kinematic equivariant dynamic optimization module (GK-EDO) with an full-atom E(3)-equivariant message-passing architecture. This framework enables iterative optimization of antibody structures under explicit geometric and kinematic constraints, generating complete antibody structures (including backbone and side chains) and simultaneously jointly optimizing the sequences and 3D structures of the complementarity-determining regions (CDRs). DGENet also introduces a novel virtual anchor docking mechanism that employs an adaptive PNet-Kabsch module to explicitly guide antibody–antigen binding and achieve precise bound conformations. Evaluations on multiple benchmark datasets demonstrate that DGENet exhibits outstanding performance in antibody structure and sequence generation as well as in designing high-affinity antibodies, underscoring its reliability as an advanced antibody design model.
TIDE: Temporal-Aware Sparse Autoencoders for Interpretable Diffusion Transformers in Image Generation
PDF ↗Diffusion Transformers (DiTs) are a powerful yet underexplored class of generative models compared to U-Net-based diffusion architectures. We propose TIDE—Temporal-aware sparse autoencoders for Interpretable Diffusion transformErs—a framework designed to extract sparse, interpretable activation features across timesteps in DiTs. TIDE effectively captures temporally-varying representations and reveals that DiTs naturally learn hierarchical semantics (e.g., 3D structure, object class, and fine-grained concepts) during large-scale pretraining. Experiments show that TIDE enhances interpretability and controllability while maintaining reasonable generation quality, enabling applications such as safe image editing and style transfer.
Radio Frequency Fingerprinting (RFF) exploits inherent hardware-level imperfections of wireless transmitters as unclonable identifiers for device identification. These unique signatures, concealed in transmitted signals, inevitably experience complex distortions during wireless propagation (i.e., coupled with ambient noise and channel fading), making it extremely challenging for reliable extraction. Despite substantial research efforts dedicated to advancing effective fingerprint extraction techniques, current approaches still struggle in handling fingerprint robustness under distance variations, leading to severe SNR fluctuations and complex multipath effects. To address this gap, we propose the first unsupervised framework for distance-invariant radio frequency fingerprinting, eliminating dependence on labeled target domain data. Specifically, we first preprocess raw RF samples by confining them within a specified variation range and filtering noisy high-frequency components while avoiding aliasing. For source domain data, we then propose a set of physics-inspired data augmentation techniques designed to emulate realistic wireless signal propagation effects. Building on this, we introduce a dual alignment contrastive learning method to explicitly decouple identity-discriminative features, ensuring the model focuses on device-specific traits. Furthermore, we incorporate a pseudo-labeling-based domain adaptation module to refine the model for the unlabeled target domain, enhancing its generalization to unseen distances. Extensive experiments on public datasets show that our method achieves the identification accuracy outperforming state-of-the-art approaches by 40%, while maintaining computational efficiency suitable for edge deployment.
Predicting the tensor properties of crystalline materials is a fundamental task in materials science. Unlike single-value property prediction, which is inherently invariant, tensor property prediction requires maintaining O(3) group tensor equivariance. Such equivariance constraint often requires specialized architecture designs to achieve effective predictions, inevitably introducing tremendous computational costs. Canonicalization, a classical technique for geometry, has recently been explored for efficient learning with symmetry. In this work, we revisit the problem of crystal tensor property prediction through the lens of canonicalization. Specifically, we demonstrate how polar decomposition, a simple yet efficient algebraic method, can serve as a form of canonicalization and be leveraged to ensure equivariant tensor property prediction. Building upon this insight, we propose a general O(3)-equivariant framework for efficient crystal tensor property prediction, referred to as GoeCTP. By utilizing canonicalization, GoeCTP achieves high efficiency without requiring the explicit incorporation of equivariance constraints into the network architecture. Experimental results indicate that GoeCTP achieves the best prediction performance and runs at most 13 times faster compared to existing state-of-the-art methods in benchmarking datasets, underscoring its effectiveness and efficiency.
Transolver Is a Linear Transformer: Revisiting Physics-Attention Through the Lens of Linear Attention
PDF ↗Recent advances in Transformer-based Neural Operators have enabled significant progress in data-driven solvers for Partial Differential Equations (PDEs). Most current research has focused on reducing the quadratic complexity of attention to address the resulting low training and inference efficiency. Among these works, Transolver stands out as a representative method that introduces Physics-Attention to reduce computational costs. Physics-Attention projects grid points into slices for slice attention, then maps them back through deslicing. However, we observe that Physics-Attention can be reformulated as a special case of linear attention, and that the slice attention may even hurt the model performance. Based on these observations, we argue that its effectiveness primarily arises from the slice and deslice operations rather than interactions between slices. Building on this insight, we propose a two-step transformation to redesign Physics-Attention into a canonical linear attention, which we call Linear Attention Neural Operator (LinearNO). Our method achieves state-of-the-art performance on six standard PDE benchmarks, while reducing the number of parameters by an average of 40.0% and computational cost by 36.2%. Additionally, it delivers superior performance on two challenging, industrial-level datasets: AirfRANS and Shape-Net Car.
VoiceCloak: A Multi-Dimensional Defense Framework Against Unauthorized Diffusion-Based Voice Cloning
PDF ↗Diffusion Models (DMs) have achieved remarkable success in realistic voice cloning (VC), while they also increase the risk of malicious misuse. Existing proactive defenses designed for traditional VC models aim to disrupt the forgery process, but they have been proven incompatible with DMs due to the intricate generative mechanisms of diffusion. To bridge this gap, we introduce VoiceCloak, a multi-dimensional proactive defense framework with the goal of obfuscating speaker identity and degrading perceptual quality in potential unauthorized VC. To achieve these goals, we conduct a focused analysis to identify specific vulnerabilities within DMs, allowing VoiceCloak to disrupt the cloning process by introducing adversarial perturbations into the reference audio. Specifically, to obfuscate speaker identity, VoiceCloak first targets speaker identity by distorting representation learning embeddings to maximize identity variation, which is guided by auditory perception principles. Additionally, VoiceCloak disrupts crucial conditional guidance processes, particularly attention context, thereby preventing the alignment of vocal characteristics that are essential for achieving convincing cloning. Then, to address the second objective, VoiceCloak introduces score magnitude amplification to actively steer the reverse trajectory away from the generation of high-quality speech. Noise-guided semantic corruption is further employed to disrupt structural speech semantics captured by DMs, degrading output quality. Extensive experiments highlight VoiceCloak's outstanding defense success rate against unauthorized diffusion-based voice cloning. Additional audio samples of VoiceCloak are available in demo pages.
Real-world scientific applications frequently encounter incomplete observational data due to sensor limitations, geographic constraints, or measurement costs. Although neural operators significantly advanced PDE solving in terms of computational efficiency and accuracy, their underlying assumption of fully-observed spatial inputs severely restricts applicability in real-world application. We introduce the first systematic framework for learning neural operators from partial observation. We identify and formalize two fundamental obstacles: (i) the supervision gap in unobserved regions that prevents effective learning of physical correlations, and (ii) the dynamic spatial mismatch between incomplete inputs and complete solution fields. Specifically, our proposed LANO (Latent Autoregressive Neural Operator) introduces two novel components designed explicitly to address the core difficulties of partial observations: (i) a mask-to-predict training strategy that creates artificial supervision by strategically masking observed regions, and (ii) a Physics-Aware Latent Propagator that reconstructs solutions through boundary-first autoregressive generation in latent space. Additionally, we develop POBench-PDE, a dedicated and comprehensive benchmark designed specifically for evaluating neural operators under partial observation conditions across three PDE-governed tasks. LANO achieves state-of-the-art performance with relative error reductions ranging from eighteen to sixty-nine percent across all benchmarks under patch-wise missingness with missing rates below fifty percent, including real-world climate prediction. Our approach effectively addresses practical scenarios with missing rates of up to seventy-five percent, to some extent bridging the existing gap between idealized research settings and the complexities of real-world scientific computing.
Information diffusion prediction is crucial for understanding social network dynamics, yet existing methods often neglect user participation uncertainty. This oversight typically stems from an implicit participation homogeneity assumption, which treats all observed interactions as equally reliable propagation signals, leading to fragile inferred topologies and uncertainty contamination. To address this, we propose SIEVE, a novel framework employing two synergistic strategies. First, robust node representations are learned via controllable uncertainty injection coupled with associated contrastive learning, mitigating topological fragility. Second, an uncertainty-aware directed graph aggregation mechanism is introduced, which dynamically constructs asymmetric aggregation topologies with adaptive weighting, thereby suppressing uncertainty contamination. Experiments on four public datasets demonstrate that SIEVE significantly outperforms state-of-the-art methods, offering valuable insights for designing robust information diffusion prediction models.
Recent studies have demonstrated that hypergraph neural networks (HGNNs) are susceptible to adversarial attacks. However, existing methods rely on the specific information mechanisms of target HGNNs, overlooking the common vulnerability caused by the significant differences in hyperedge pivotality along aggregation paths in most HGNNs, thereby limiting the transferability and effectiveness of attacks. In this paper, we present a novel framework, i.e., Transferable Hypergraph Attack via Injecting Nodes into Pivotal Hyperedges (TH-Attack), to address these limitations. Specifically, we design a hyperedge recognizer via pivotality assessment to obtain pivotal hyperedges within the aggregation paths of HGNNs. Furthermore, we introduce a feature inverter based on pivotal hyperedges, which generates malicious nodes by maximizing the semantic divergence between the generated features and the pivotal hyperedges features. Lastly, by injecting these malicious nodes into the pivotal hyperedges, TH-Attack improves the transferability and effectiveness of attacks. Extensive experiments are conducted on six authentic datasets to validate the effectiveness of TH-Attack and the corresponding superiority to state-of-the-art methods.
Fake news detection methods based on writing style have achieved remarkable progress. However, as adversaries increasingly imitate the style of authentic news, the effectiveness of such approaches is gradually diminishing. Recent research has explored incorporating large language models (LLMs) to enhance fake news detection. Yet, despite their transformative potential, LLMs remain an untapped goldmine for fake news detection, with their real-world adoption hampered by shallow functionality exploration, ambiguous usability, and prohibitive inference costs. In this paper, we propose a novel fake news detection framework, dubbed FACTGUARD, that leverages LLMs to extract event-centric content, thereby reducing the impact of writing style on detection performance. Furthermore, our approach introduces a dynamic usability mechanism that identifies contradictions and ambiguous cases in factual reasoning, adaptively incorporating LLM advice to improve decision reliability. To ensure efficiency and practical deployment, we employ knowledge distillation to derive FACTGUARD-D, enabling the framework to operate effectively in cold-start and resource-constrained scenarios. Comprehensive experiments on two benchmark datasets demonstrate that our approach consistently outperforms existing methods in both robustness and accuracy, effectively addressing the challenges of style sensitivity and LLM usability in fake news detection.