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Neuroscience, Cognitive Science

Jiahang Cao, Mingyuan Sun, Ziqing Wang, Hao Cheng, Qiang Zhang, shibo zhou, Renjing Xu

Event-based cameras are attracting significant interest as they provide rich edge information, high dynamic range, and high temporal resolution. Many state-of-the-art event-based algorithms rely on splitting the events into fixed groups, resulting in the omission of crucial temporal information, particularly when dealing with diverse motion scenarios (e.g., high/low speed). In this work, we propose SpikeSlicer, a novel-designed event processing framework capable of splitting events stream adaptively. SpikeSlicer utilizes a low-energy spiking neural network (SNN) to trigger event slicing. To guide the SNN to fire spikes at optimal time steps, we propose the Spiking Position-aware Loss (SPA-Loss) to modulate the neuron's state. Additionally, we develop a Feedback-Update training strategy that refines the slicing decisions using feedback from the downstream artificial neural network (ANN). Extensive experiments demonstrate that our method yields significant performance improvements in event-based object tracking and recognition. Notably, SpikeSlicer provides a brand-new SNN-ANN cooperation paradigm, where the SNN acts as an efficient, low-energy data processor to assist the ANN in improving downstream performance, injecting new perspectives and potential avenues of exploration.

Neuroscience, Cognitive Science

Matthijs Pals, A Erdem Sağtekin, Felix Pei, Manuel Gloeckler, Jakob H Macke

A central aim in computational neuroscience is to relate the activity of large populations of neurons to an underlying dynamical system. Models of these neural dynamics should ideally be both interpretable and fit the observed data well. Low-rank recurrent neural networks (RNNs) exhibit such interpretability by having tractable dynamics. However, it is unclear how to best fit low-rank RNNs to data consisting of noisy observations of an underlying stochastic system. Here, we propose to fit stochastic low-rank RNNs with variational sequential Monte Carlo methods. We validate our method on several datasets consisting of both continuous and spiking neural data, where we obtain lower dimensional latent dynamics than current state of the art methods. Additionally, for low-rank models with piecewise linear nonlinearities, we show how to efficiently identify all fixed points in polynomial rather than exponential cost in the number of units, making analysis of the inferred dynamics tractable for large RNNs. Our method both elucidates the dynamical systems underlying experimental recordings and provides a generative model whose trajectories match observed variability.

Neuroscience, Cognitive Science

Junyi Cao, Shanyan Guan, Yanhao Ge, Wei Li, Xiaokang Yang, Chao Ma

While humans effortlessly discern intrinsic dynamics and adapt to new scenarios, modern AI systems often struggle. Current methods for visual grounding of dynamics either use pure neural-network-based simulators (black box), which may violate physical laws, or traditional physical simulators (white box), which rely on expert-defined equations that may not fully capture actual dynamics. We propose the Neural Material Adaptor (NeuMA), which integrates existing physical laws with learned corrections, facilitating accurate learning of actual dynamics while maintaining the generalizability and interpretability of physical priors. Additionally, we propose Particle-GS, a particle-driven 3D Gaussian Splatting variant that bridges simulation and observed images, allowing back-propagate image gradients to optimize the simulator. Comprehensive experiments on various dynamics in terms of grounded particle accuracy, dynamic rendering quality, and generalization ability demonstrate that NeuMA can accurately capture intrinsic dynamics. Project Page: https://xjay18.github.io/projects/neuma.html.

Neuroscience, Cognitive Science

Jonas Guan, Shon Verch, Claas Voelcker, Ethan Jackson, Nicolas Papernot, William Cunningham

A computational problem in biological reward-based learning is how credit assignment is performed in the nucleus accumbens (NAc). Much research suggests that NAc dopamine encodes temporal-difference (TD) errors for learning value predictions. However, dopamine is synchronously distributed in regionally homogeneous concentrations, which does not support explicit credit assignment (like used by backpropagation). It is unclear whether distributed errors alone are sufficient for synapses to make coordinated updates to learn complex, nonlinear reward-based learning tasks. We design a new deep Q-learning algorithm, Artificial Dopamine, to computationally demonstrate that synchronously distributed, per-layer TD errors may be sufficient to learn surprisingly complex RL tasks. We empirically evaluate our algorithm on MinAtar, the DeepMind Control Suite, and classic control tasks, and show it often achieves comparable performance to deep RL algorithms that use backpropagation.

Neuroscience, Cognitive Science

Can Demircan, Tankred Saanum, Leonardo Pettini, Marcel Binz, Blazej Baczkowski, Christian Doeller, Mona Garvert, Eric Schulz

Humans represent scenes and objects in rich feature spaces, carrying information that allows us to generalise about category memberships and abstract functions with few examples. What determines whether a neural network model generalises like a human? We tested how well the representations of $86$ pretrained neural network models mapped to human learning trajectories across two tasks where humans had to learn continuous relationships and categories of natural images. In these tasks, both human participants and neural networks successfully identified the relevant stimulus features within a few trials, demonstrating effective generalisation. We found that while training dataset size was a core determinant of alignment with human choices, contrastive training with multi-modal data (text and imagery) was a common feature of currently publicly available models that predicted human generalisation. Intrinsic dimensionality of representations had different effects on alignment for different model types. Lastly, we tested three sets of human-aligned representations and found no consistent improvements in predictive accuracy compared to the baselines. In conclusion, pretrained neural networks can serve to extract representations for cognitive models, as they appear to capture some fundamental aspects of cognition that are transferable across tasks. Both our paradigms and modelling approach offer a novel way to quantify alignment between neural networks and humans and extend cognitive science into more naturalistic domains.

Neuroscience, Cognitive Science

Markus Pettersen, Frederik Rogge, Mikkel Lepperød

Hippocampal place cells are known for their spatially selective firing patterns, which has led to the suggestion that they encode an animal's location. However, place cells also respond to contextual cues, such as smell. Furthermore, they have the ability to remap, wherein the firing fields and rates of cells change in response to changes in the environment. How place cell responses emerge, and how these representations remap is not fully understood. In this work, we propose a similarity-based objective function that translates proximity in space, to proximity in representation. We show that a neural network trained to minimize the proposed objective learns place-like representations. We also show that the proposed objective is easily extended to include other sources of information, such as context information, in the same way. When trained to encode multiple contexts, networks learn distinct representations, exhibiting remapping behaviors between contexts. The proposed objective is invariant to orthogonal transformations. Such transformations of the original trained representation (e.g. rotations), therefore yield new representations distinct from the original, without explicit relearning, akin to remapping. Our findings shed new light on the formation and encoding properties of place cells, and also demonstrate an interesting case of representational reuse.

Neuroscience, Cognitive Science

Hangchi Shen, Qian Zheng, Huamin Wang, Gang Pan

Despite spiking neural networks (SNNs) have demonstrated notable energy efficiency across various fields, the limited firing patterns of spiking neurons within fixed time steps restrict the expression of information, which impedes further improvement of SNN performance. In addition, current implementations of SNNs typically consider the firing rate or average membrane potential of the last layer as the output, lacking exploration of other possibilities. In this paper, we identify that the limited spike patterns of spiking neurons stem from the initial membrane potential (IMP), which is set to 0. By adjusting the IMP, the spiking neurons can generate additional firing patterns and pattern mappings. Furthermore, we find that in static tasks, the accuracy of SNNs at each time step increases as the membrane potential evolves from zero. This observation inspires us to propose a learnable IMP, which can accelerate the evolution of membrane potential and enables higher performance within a limited number of time steps. Additionally, we introduce the last time step (LTS) approach to accelerate convergence in static tasks, and we propose a label smooth temporal efficient training (TET) loss to mitigate the conflicts between optimization objective and regularization term in the vanilla TET. Our methods improve the accuracy by 4.05\% on ImageNet compared to baseline and achieve state-of-the-art performance of 87.80\% on CIFAR10-DVS and 87.86\% on N-Caltech101.

Neuroscience, Cognitive Science

Lakshmi Narasimhan Govindarajan, Abhiram Iyer, Valmiki Kothare, Ila Fiete

Visual representations become progressively more abstract along the cortical hierarchy. These abstract representations define notions like objects and shapes, but at the cost of spatial specificity. By contrast, low-level regions represent spatially local but simple input features. How do spatially non-specific representations of abstract concepts in high-level areas flexibly modulate the low-level sensory representations in appropriate ways to guide context-driven and goal-directed behaviors across a range of tasks? We build a biologically motivated and trainable neural network model of dynamics in the visual pathway, incorporating local, lateral, and feedforward synaptic connections, excitatory and inhibitory neurons, and long-range top-down inputs conceptualized as low-rank modulations of the input-driven sensory responses by high-level areas. We study this ${\bf D}$ynamical ${\bf C}$ortical ${\bf net}$work ($DCnet$) in a visual cue-delay-search task and show that the model uses its own cue representations to adaptively modulate its perceptual responses to solve the task, outperforming state-of-the-art DNN vision and LLM models. The model's population states over time shed light on the nature of contextual modulatory dynamics, generating predictions for experiments. We fine-tune the same model on classic psychophysics attention tasks, and find that the model closely replicates known reaction time results. This work represents a promising new foundation for understanding and making predictions about perturbations to visual processing in the brain.

Neuroscience, Cognitive Science

Andrew Wagenmaker, Lu Mi, Marton Rozsa, Matthew Bull, Karel Svoboda, Kayvon Daie, Matthew Golub, Kevin Jamieson

Recent advances in techniques for monitoring and perturbing neural populations have greatly enhanced our ability to study circuits in the brain. In particular, two-photon holographic optogenetics now enables precise photostimulation of experimenter-specified groups of individual neurons, while simultaneous two-photon calcium imaging enables the measurement of ongoing and induced activity across the neural population. Despite the enormous space of potential photostimulation patterns and the time-consuming nature of photostimulation experiments, very little algorithmic work has been done to determine the most effective photostimulation patterns for identifying the neural population dynamics. Here, we develop methods to efficiently select which neurons to stimulate such that the resulting neural responses will best inform a dynamical model of the neural population activity. Using neural population responses to photostimulation in mouse motor cortex, we demonstrate the efficacy of a low-rank linear dynamical systems model, and develop an active learning procedure which takes advantage of low-rank structure to determine informative photostimulation patterns. We demonstrate our approach on both real and synthetic data, obtaining in some cases as much as a two-fold reduction in the amount of data required to reach a given predictive power. Our active stimulation design method is based on a novel active learning procedure for low-rank regression, which may be of independent interest.

Neuroscience, Cognitive Science

Changze Lv, Dongqi Han, Yansen Wang, Xiaoqing Zheng, Xuanjing Huang, Dongsheng Li

Spiking neural networks (SNNs) represent a promising approach to developing artificial neural networks that are both energy-efficient and biologically plausible.However, applying SNNs to sequential tasks, such as text classification and time-series forecasting, has been hindered by the challenge of creating an effective and hardware-friendly spike-form positional encoding (PE) strategy.Drawing inspiration from the central pattern generators (CPGs) in the human brain, which produce rhythmic patterned outputs without requiring rhythmic inputs, we propose a novel PE technique for SNNs, termed CPG-PE.We demonstrate that the commonly used sinusoidal PE is mathematically a specific solution to the membrane potential dynamics of a particular CPG.Moreover, extensive experiments across various domains, including time-series forecasting, natural language processing, and image classification, show that SNNs with CPG-PE outperform their conventional counterparts.Additionally, we perform analysis experiments to elucidate the mechanism through which SNNs encode positional information and to explore the function of CPGs in the human brain.This investigation may offer valuable insights into the fundamental principles of neural computation.

Neuroscience, Cognitive Science

Farzaneh Taleb, Miguel Vasco, Antonio Ribeiro, Mårten Björkman, Danica Kragic

The human brain encodes stimuli from the environment into representations that form a sensory perception of the world. Despite recent advances in understanding visual and auditory perception, olfactory perception remains an under-explored topic in the machine learning community due to the lack of large-scale datasets annotated with labels of human olfactory perception. In this work, we ask the question of whether pre-trained transformer models of chemical structures encode representations that are aligned with human olfactory perception, i.e., can transformers smell like humans? We demonstrate that representations encoded from transformers pre-trained on general chemical structures are highly aligned with human olfactory perception. We use multiple datasets and different types of perceptual representations to show that the representations encoded by transformer models are able to predict: (i) labels associated with odorants provided by experts; (ii) continuous ratings provided by human participants with respect to pre-defined descriptors; and (iii) similarity ratings between odorants provided by human participants. Finally, we evaluate the extent to which this alignment is associated with physicochemical features of odorants known to be relevant for olfactory decoding.

Neuroscience, Cognitive Science

Julie Xueyan Niu, Cristina Savin, Eero Simoncelli

Prediction is a fundamental capability of all living organisms, and has been proposed as an objective for learning sensory representations. Recent work demonstrates that in primate visual systems, prediction is facilitated by neural representations that follow straighter temporal trajectories than their initial photoreceptor encoding, which allows for prediction by linear extrapolation. Inspired by these experimental findings, we develop a self-supervised learning (SSL) objective that explicitly quantifies and promotes straightening. We demonstrate the power of this objective in training deep feedforward neural networks on smoothly-rendered synthetic image sequences that mimic commonly-occurring properties of natural videos. The learned model contains neural embeddings that are predictive, but also factorize the geometric, photometric, and semantic attributes of objects. The representations also prove more robust to noise and adversarial attacks compared to previous SSL methods that optimize for invariance to random augmentations. Moreover, these beneficial properties can be transferred to other training procedures by using the straightening objective as a regularizer, suggesting a broader utility for straightening as a principle for robust unsupervised learning.

Neuroscience, Cognitive Science

Shivang Rawat, David Heeger, Stefano Martiniani

Stability in recurrent neural models poses a significant challenge, particularly in developing biologically plausible neurodynamical models that can be seamlessly trained. Traditional cortical circuit models are notoriously difficult to train due to expansive nonlinearities in the dynamical system, leading to an optimization problem with nonlinear stability constraints that are difficult to impose. Conversely, recurrent neural networks (RNNs) excel in tasks involving sequential data but lack biological plausibility and interpretability. In this work, we address these challenges by linking dynamic divisive normalization (DN) to the stability of "oscillatory recurrent gated neural integrator circuits'' (ORGaNICs), a biologically plausible recurrent cortical circuit model that dynamically achieves DN and that has been shown to simulate a wide range of neurophysiological phenomena. By using the indirect method of Lyapunov, we prove the remarkable property of unconditional local stability for an arbitrary-dimensional ORGaNICs circuit when the recurrent weight matrix is the identity. We thus connect ORGaNICs to a system of coupled damped harmonic oscillators, which enables us to derive the circuit's energy function, providing a normative principle of what the circuit, and individual neurons, aim to accomplish. Further, for a generic recurrent weight matrix, we prove the stability of the 2D model and demonstrate empirically that stability holds in higher dimensions. Finally, we show that ORGaNICs can be trained by backpropagation through time without gradient clipping/scaling, thanks to its intrinsic stability property and adaptive time constants, which address the problems of exploding, vanishing, and oscillating gradients. By evaluating the model's performance on RNN benchmarks, we find that ORGaNICs outperform alternative neurodynamical models on static image classification tasks and perform comparably to LSTMs on sequential tasks.

Neuroscience, Cognitive Science

Yuki Minai, Joana Soldado-Magraner, Matthew Smith, Byron M Yu

Brain stimulation has the potential to create desired neural population activity states. However, it is challenging to search the large space of stimulation parameters, for example, selecting which subset of electrodes to be used for stimulation. In this scenario, creating a model that maps the configuration of stimulation parameters to the brain’s response can be beneficial. Training such an expansive model usually requires more stimulation-response samples than can be collected in a given experimental session. Furthermore, changes in the properties of the recorded activity over time can make it challenging to merge stimulation-response samples across sessions. To address these challenges, we propose MiSO (MicroStimulation Optimization), a closed-loop stimulation framework to drive neural population activity toward specified states by optimizing over a large stimulation parameter space. MiSO consists of three key components: 1) a neural activity alignment method to merge stimulation-response samples across sessions, 2) a statistical model trained on the merged samples to predict the brain's response to untested stimulation parameter configurations, and 3) an online optimization algorithm to adaptively update the stimulation parameter configuration based on the model's predictions. In this study, we implemented MiSO with a factor analysis (FA) based alignment method, a convolutional neural network (CNN), and an epsilon greedy optimization algorithm. We tested MiSO in closed-loop experiments using electrical microstimulation in the prefrontal cortex of a non-human primate. Guided by the CNN predictions, MiSO successfully searched amongst thousands of stimulation parameter configurations to drive the neural population activity toward specified states. More broadly, MiSO increases the clinical viability of neuromodulation technologies by enabling the use of many-fold larger stimulation parameter spaces.

Neuroscience, Cognitive Science

Yamin Li, Ange Lou, Ziyuan Xu, Shengchao Zhang, Shiyu Wang, Dario Englot, Soheil Kolouri, Daniel Moyer, Roza Bayrak, Catie Chang

Functional magnetic resonance imaging (fMRI) is an indispensable tool in modern neuroscience, providing a non-invasive window into whole-brain dynamics at millimeter-scale spatial resolution. However, fMRI is constrained by issues such as high operation costs and immobility. With the rapid advancements in cross-modality synthesis and brain decoding, the use of deep neural networks has emerged as a promising solution for inferring whole-brain, high-resolution fMRI features directly from electroencephalography (EEG), a more widely accessible and portable neuroimaging modality. Nonetheless, the complex projection from neural activity to fMRI hemodynamic responses and the spatial ambiguity of EEG pose substantial challenges both in modeling and interpretability. Relatively few studies to date have developed approaches for EEG-fMRI translation, and although they have made significant strides, the inference of fMRI signals in a given study has been limited to a small set of brain areas and to a single condition (i.e., either resting-state or a specific task). The capability to predict fMRI signals in other brain areas, as well as to generalize across conditions, remain critical gaps in the field. To tackle these challenges, we introduce a novel and generalizable framework: NeuroBOLT, i.e., Neuro-to-BOLD Transformer, which leverages multi-dimensional representation learning from temporal, spatial, and spectral domains to translate raw EEG data to the corresponding fMRI activity signals across the brain. Our experiments demonstrate that NeuroBOLT effectively reconstructs unseen resting-state fMRI signals from primary sensory, high-level cognitive areas, and deep subcortical brain regions, achieving state-of-the-art accuracy with the potential to generalize across varying conditions and sites, which significantly advances the integration of these two modalities.

Neuroscience, Cognitive Science

Yu-Ang Cheng, Ivan F Rodriguez Rodriguez, Sixuan Chen, Kohitij Kar, Takeo Watanabe, Thomas Serre

Current neural network models of primate vision focus on replicating overall levels of behavioral accuracy, often neglecting perceptual decisions' rich, dynamic nature. Here, we introduce a novel computational framework to model the dynamics of human behavioral choices by learning to align the temporal dynamics of a recurrent neural network (RNN) to human reaction times (RTs). We describe an approximation that allows us to constrain the number of time steps an RNN takes to solve a task with human RTs. The approach is extensively evaluated against various psychophysics experiments. We also show that the approximation can be used to optimize an ``ideal-observer'' RNN model to achieve an optimal tradeoff between speed and accuracy without human data. The resulting model is found to account well for human RT data. Finally, we use the approximation to train a deep learning implementation of the popular Wong-Wang decision-making model. The model is integrated with a convolutional neural network (CNN) model of visual processing and evaluated using both artificial and natural image stimuli. Overall, we present a novel framework that helps align current vision models with human behavior, bringing us closer to an integrated model of human vision.

Neuroscience, Cognitive Science

Amelia Johnson, Michael Buice, Koosha Khalvati

Self-assessment of one’s choices, i.e., confidence, is the topic of many decision neuroscience studies. Computational models of confidence, however, are limited to specific scenarios such as between choices with the same value. Here we present a normative framework for modeling decision confidence that is generalizable to various tasks and experimental setups. We further drive the implications of our model from both theoretical and experimental points of view. Specifically, we show that our model maps to the planning as an inference framework where the objective function is maximizing the gained reward and information entropy of the policy. Moreover, we validate our model on two different psychophysics experiments and show its superiority over other approaches in explaining subjects' confidence reports.

Neuroscience, Cognitive Science

Pablo J. Diego Simon, Stéphane d'Ascoli, Emmanuel Chemla, Yair Lakretz, Jean-Remi King

Originally formalized with symbolic representations, syntactic trees may also be effectively represented in the activations of large language models (LLMs). Indeed, a ''Structural Probe'' can find a subspace of neural activations, where syntactically-related words are relatively close to one-another. However, this syntactic code remains incomplete: the distance between the Structural Probe word embeddings can represent the \emph{existence} but not the type and direction of syntactic relations. Here, we hypothesize that syntactic relations are, in fact, coded by the relative direction between nearby embeddings. To test this hypothesis, we introduce a ''Polar Probe'' trained to read syntactic relations from both the distance and the direction between word embeddings. Our approach reveals three main findings. First, our Polar Probe successfully recovers the type and direction of syntactic relations, and substantially outperforms the Structural Probe by nearly two folds. Second, we confirm that this polar coordinate system exists in a low-dimensional subspace of the intermediate layers of many LLMs and becomes increasingly precise in the latest frontier models. Third, we demonstrate with a new benchmark that similar syntactic relations are coded similarly across the nested levels of syntactic trees. Overall, this work shows that LLMs spontaneously learn a geometry of neural activations that explicitly represents the main symbolic structures of linguistic theory.

Neuroscience, Cognitive Science

Lynn Le, Paolo Papale, Katja Seeliger, Antonio Lozano, Thirza Dado, Feng Wang, Pieter Roelfsema, Marcel A. J. van Gerven, Yağmur Güçlütürk, Umut Güçlü

In this paper, we reconstruct naturalistic images directly from macaque brain signals using a convolutional neural network (CNN) based decoder. We investigate the ability of this CNN-based decoding technique to differentiate among neuronal populations from areas V1, V4, and IT, revealing distinct readout characteristics for each. This research marks a progression from low-level to high-level brain signals, thereby enriching the existing framework for utilizing CNN-based decoders to decode brain activity. Our results demonstrate high-precision reconstructions of naturalistic images, highlighting the efficiency of CNN-based decoders in advancing our knowledge of how the brain's representations translate into pixels. Additionally, we present a novel space-time-resolved decoding technique, demonstrating how temporal resolution in decoding can advance our understanding of neural representations. Moreover, we introduce a learned receptive field layer that sheds light on the CNN-based model's data processing during training, enhancing understanding of its structure and interpretive capacity.

Neuroscience, Cognitive Science

Eric Volkmann, Alena Brändle, Daniel Durstewitz, Georgia Koppe

Data-driven inference of the generative dynamics underlying a set of observed time series is of growing interest in machine learning and the natural sciences. In neuroscience, such methods promise to alleviate the need to handcraft models based on biophysical principles and allow to automatize the inference of inter-individual differences in brain dynamics. Recent breakthroughs in training techniques for state space models (SSMs) specifically geared toward dynamical systems (DS) reconstruction (DSR) enable to recover the underlying system including its geometrical (attractor) and long-term statistical invariants from even short time series. These techniques are based on control-theoretic ideas, like modern variants of teacher forcing (TF), to ensure stable loss gradient propagation while training. However, as it currently stands, these techniques are not directly applicable to data modalities where current observations depend on an entire history of previous states due to a signal’s filtering properties, as common in neuroscience (and physiology more generally). Prominent examples are the blood oxygenation level dependent (BOLD) signal in functional magnetic resonance imaging (fMRI) or Ca$^{2+}$ imaging data. Such types of signals render the SSM's decoder model non-invertible, a requirement for previous TF-based methods.Here, exploiting the recent success of control techniques for training SSMs, we propose a novel algorithm that solves this problem and scales exceptionally well with model dimensionality and filter length. We demonstrate its efficiency in reconstructing dynamical systems, including their state space geometry and long-term temporal properties, from just short BOLD time series.