Estimating the target extent poses a fundamental challenge in visual object tracking. Typically, trackers are box-centric and fully rely on a bounding box to define the target in the scene. In practice, objects often have complex shapes and are not aligned with the image axis. In these cases, bounding boxes do not provide an accurate description of the target and often contain a majority of background pixels. We propose a segmentation-centric tracking pipeline that not only produces a highly accurate segmentation mask, but also internally works with segmentation masks instead of bounding boxes. Thus, our tracker is able to better learn a target representation that clearly differentiates the target in the scene from background content. In order to achieve the necessary robustness for the challenging tracking scenario, we propose a separate instance localization component that is used to condition the segmentation decoder when producing the output mask. We infer a bounding box from the segmentation mask, validate our tracker on challenging tracking datasets and achieve the new state of the art on LaSOT with a success AUC score of 69.7%. Since most tracking datasets do not contain mask annotations, we cannot use them to evaluate predicted segmentation masks. Instead, we validate our segmentation quality on two popular video object segmentation datasets. The code and trained models are available at https://github.com/visionml/pytracking.
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Semi-supervised video object segmentation (VOS) aims to densely track certain designated objects in videos. One of the main challenges in this task is the existence of background distractors that appear similar to the target objects. We propose three novel strategies to suppress such distractors: 1) a spatio-temporally diversified template construction scheme to obtain generalized properties of the target objects; 2) a learnable distance-scoring function to exclude spatially-distant distractors by exploiting the temporal consistency between two consecutive frames; 3) swap-and-attach augmentation to force each object to have unique features by providing training samples containing entangled objects. On all public benchmark datasets, our model achieves a comparable performance to contemporary state-of-the-art approaches, even with real-time performance. Qualitative results also demonstrate the superiority of our approach over existing methods. We believe our approach will be widely used for future VOS research.
The LiDAR point motion estimation, including motion state prediction and velocity estimation, is crucial for understanding a dynamic scene in autonomous driving. Recent 2D projection-based methods run in real-time by applying the well-optimized 2D convolution networks on either the bird’s-eye view (BEV) or the range view (RV) but suffer from lower accuracy due to information loss during the 2D projection. Thus, we propose a novel sequential multi-view fusion network (SMVF), composed of a BEV branch and an RV branch, in charge of encoding the motion information and spatial information, respectively. By looking from distinct views and integrating with the original LiDAR point features, the SMVF produces a comprehensive motion prediction, while keeping its efficiency. Moreover, to generalize the motion estimation well to the objects with fewer training samples, we propose a sequential instance copy-paste (SICP) for generating realistic LiDAR sequences for these objects. The experiments on the SemanticKITTI moving object segmentation (MOS) and Waymo scene flow benchmarks demonstrate that our SMVF outperforms all existing methods by a large margin. \keywords{Motion State Prediction, Velocity Estimation, Multi-View Fusion, Generalization of Motion Estimation}
As segmentation labels are scarce, extensive researches have been conducted to train segmentation networks with domain adaptation, semi-supervised or self-supervised learning techniques to utilize abun- dant unlabeled dataset. However, these approaches appear different from each other, so it is not clear how these approaches can be combined for better performance. Inspired by recent multi-domain image translation approaches, here we propose a novel segmentation framework using adap- tive instance normalization (AdaIN), so that a single generator is trained to perform both domain adaptation and semi-supervised segmentation tasks via knowledge distillation by simply changing task-specific AdaIN codes. Specifically, our framework is designed to deal with difficult situ- ations in chest X-ray radiograph (CXR) segmentation, where labels are only available for normal data, but trained model should be applied to both normal and abnormal data. The proposed network demonstrates great generalizability under domain shift and achieves the state-of-the- art performance for abnormal CXR segmentation.
Self-supervised learning (SSL) opens up huge opportunities for medical image analysis that is well known for its lack of annotations. However, aggregating massive (unlabeled) 3D medical images like computerized tomography (CT) remains challenging due to its high imaging cost and privacy restrictions. In this paper, we advocate bringing a wealth of 2D images like chest X-rays as compensation for the lack of 3D data, aiming to build a universal medical self-supervised representation learning framework, called UniMiSS. The following problem is how to break the dimensionality barrier, i.e., making it possible to perform SSL with both 2D and 3D images? To achieve this, we design a pyramid U-like medical Transformer (MiT). It is composed of the switchable patch embedding (SPE) module and Transformers. The SPE module adaptively switches to either 2D or 3D patch embedding, depending on the input dimension. The embedded patches are converted into a sequence regardless of their original dimensions. The Transformers model the long-term dependencies in a sequence-to-sequence manner, thus enabling UniMiSS to learn representations from both 2D and 3D images. With the MiT as the backbone, we perform the UniMiSS in a self-distillation manner. We conduct expensive experiments on six 3D/2D medical image analysis tasks, including segmentation and classification. The results show that the proposed UniMiSS achieves promising performance on various downstream tasks, outperforming the ImageNet pre-training and other advanced SSL counterparts substantially. Code is available at https://github.com/YtongXie/UniMiSS-code.
Detecting and segmenting objects within whole slide images is essential in computational pathology workflow. Self-supervised learning (SSL) is appealing to such annotation-heavy tasks. Despite the extensive benchmarks in natural images for dense tasks, such studies are, unfortunately, absent in current works for pathology. Our paper in- tends to narrow this gap. We first benchmark representative SSL methods for dense prediction tasks in pathology images. Then, we propose concept contrastive learning (ConCL), an SSL framework for dense pre-training. We explore how ConCL performs with concepts provided by different sources and end up with proposing a simple dependency-free concept generating method that does not rely on external segmentation algorithms or saliency detection models. Extensive experiments demonstrate the superiority of ConCL over previous state-of-the-art SSL methods across different settings. Along our exploration, we distill several important and intriguing components contributing to the success of dense pre-training for pathology images. We hope this work could provide useful data points and encourage the community to conduct ConCL pre-training for problems of interest. Code is available.
For 3D medical image (e.g. CT and MRI) segmentation, the difficulty of segmenting each slice in a clinical case varies greatly. Previous research on volumetric medical image segmentation in a slice-by-slice manner conventionally use the identical 2D deep neural network to segment all the slices of the same case, ignoring the data heterogeneity among image slices. In this paper, we focus on multi-modal 3D MRI brain tumor segmentation and propose a dynamic architecture network named Med-DANet based on adaptive model selection to achieve effective accuracy and efficiency trade-off. For each slice of the input 3D MRI volume, our proposed method learns a slice-specific decision by the Decision Network to dynamically select a suitable model from the predefined Model Bank for the subsequent 2D segmentation task. Extensive experimental results on both BraTS 2019 and 2020 datasets show that our proposed method achieves comparable or better results than previous state-of-the-art methods for 3D MRI brain tumor segmentation with much less model complexity. Compared with the state-of-the-art 3D method TransBTS, the proposed framework improves the model efficiency by up to 3.5x without sacrificing the accuracy. Our code will be publicly available at https://github.com/Wenxuan-1119/Med-DANet.
Medical image segmentation under federated learning (FL) is a promising direction by allowing multiple clinical sites to collaboratively learn a global model without centralizing datasets. However, using a single model to adapt to various data distributions from different sites is extremely challenging. Personalized FL tackles this issue by only utilizing partial model parameters shared from global server, while keeping the rest to adapt to its own data distribution in the local training of each site. However, most existing methods concentrate on the partial parameter splitting, while do not consider the inter-site in-consistencies during the local training, which in fact can facilitate the knowledge communication over sites to benefit the model learning for improving the local accuracy. In this paper, we propose a personalized federated framework with Local Calibration (LC-Fed), to leverage the inter-site in-consistencies in both feature- and prediction- levels to boost the segmentation. Concretely, as each local site has its alternative attention on the various features, we first design the contrastive site embedding coupled with channel selection operation to calibrate the encoded features. Moreover, we propose to exploit the knowledge of prediction-level in-consistency to guide the personalized modeling on the ambiguous regions, e.g., anatomical boundaries. It is achieved by computing a disagreement-aware map to calibrate the prediction. Effectiveness of our method has been verified on three medical image segmentation tasks with different modalities, where our method consistently shows superior performance to the state-of-the-art personalized FL methods. Code is available at https://github.com/jcwang123/FedLC.
Auto-FedRL: Federated Hyperparameter Optimization for Multi-Institutional Medical Image Segmentation
PDF ↗Federated learning (FL) is a distributed machine learning technique that enables collaborative model training while avoiding explicit data sharing. The inherent privacy-preserving property of FL algorithms makes them especially attractive to the medical field. However, in case of heterogeneous client data distributions, standard FL methods are unstable and require intensive hyperparameter tuning to achieve optimal performance. Conventional hyperparameter optimization algorithms are impractical in real-world FL applications as they involve numerous training trials, which are often not affordable with limited compute budgets. In this work, we propose an efficient reinforcement learning (RL)-based federated hyperparameter optimization algorithm, termed Auto-FedRL, in which an online RL agent can dynamically adjust hyperparameters of each client based on the current training progress. Extensive experiments are conducted to investigate different search strategies and RL agents. The effectiveness of the proposed method is validated on a heterogeneous data split of the CIFAR-10 dataset as well as two real-world medical image segmentation datasets for COVID-19 lesion segmentation in chest CT and pancreas segmentation in abdominal CT..
Generalizable Medical Image Segmentation via Random Amplitude Mixup and Domain-Specific Image Restoration
PDF ↗For medical image analysis, segmentation models trained on one or several domains lack generalization ability to unseen domains due to discrepancies between different data acquisition policies. We argue that the degeneration in segmentation performance is mainly attributed to overfitting to source domains and domain shift. To this end, we present a novel generalizable medical image segmentation method. To be specific, we design our approach as a multi-task paradigm by combining the segmentation model with a self-supervision domain-specific image restoration (DSIR) module for model regularization. We also design a random amplitude mixup (RAM) module, which incorporates low-level frequency information of different domain images to synthesize new images. To guide our model be resistant to domain shift, we introduce a semantic consistency loss. We demonstrate the performance of our method on two public generalizable segmentation benchmarks in medical images, which validates our method could achieve the state-of-the-art performance.
Semantic volume segmentation suffers from the requirement of having voxel-wise annotated ground-truth data, which requires immense effort to obtain. In this work, we investigate how models can be trained from sparsely annotated volumes, i.e. volumes with only individual slices annotated. By formulating the scenario as a semi-weakly supervised problem where only some regions in the volume are annotated, we obtain surprising results: expensive dense volumetric annotations can be replaced by cheap, partially labeled volumes with limited impact on accuracy if the hypothesis space of valid models gets properly constrained during training. With our Contrastive Constrained Regularization (Con2R), we demonstrate that 3D convolutional models can be trained with less than 4% of only two dimensional ground-truth labels and still reach up to 88% accuracy of fully supervised baseline models with dense volumetric annotations. To get insights into Con2Rs success, we study how strong semi-supervised algorithms transfer to our new volumetric semi-weakly supervised setting. In this manner, we explore retinal fluid and brain tumor segmentation and give a detailed look into accuracy progression for scenarios with extremely scarce labels.
This paper explores the point set representation for tubular structure extraction tasks. Compared with the traditional mask representation, the point set representation enjoys its flexibility and representation ability, which would not be restricted by the fixed grid as the mask. Inspired by this, we propose PointScatter, an alternative to the segmentation models for the tubular structure extraction task. PointScatter splits the image into scatter regions and parallelly predicts points for each scatter region. We further propose the greedy-based region-wise bipartite matching algorithm to train the network end-to-end and efficiently. We benchmark the PointScatter on four public tubular datasets, and the extensive experiments on tubular structure segmentation and centerline extraction task demonstrate the effectiveness of our approach. Code is available at https://github.com/zhangzhao2022/pointscatter.
Semantic segmentation arises as the backbone of many vision systems, spanning from self-driving cars and robot navigation to augmented reality and teleconferencing. Frequently operating under stringent latency constraints within a limited resource envelope, optimising for efficient execution becomes important. At the same time, the heterogeneous capabilities of the target platforms and diverse constraints of different applications require the design and training of multiple target-specific segmentation models, leading to excessive maintenance costs. To this end, we propose a framework for converting state-of-the-art segmentation CNNs to Multi-Exit Semantic Segmentation (MESS) networks: specially trained models that employ parametrised early exits along their depth to i) dynamically save computation during inference on easier samples and ii) save training and maintenance cost by offering a post-training customisable speed-accuracy trade-off. Designing and training such networks naively can hurt performance. Thus, we propose novel two-staged training scheme for multi-exit networks. Furthermore, the parametrisation of MESS enables co-optimising the number, placement and architecture of the attached segmentation heads along with the exit policy, upon deployment via exhaustive search in <1GPUh. This allows MESS to rapidly adapt to the device capabilities and application requirements for each target use-case, offering a train-once-deploy-everywhere solution. MESS variants achieve latency gains of up to 2.83x with the same accuracy, or 5.33 pp higher accuracy for the same computational budget, compared to the original backbone network. Lastly, MESS delivers orders of magnitude faster architectural customisation, compared to state-of-the-art techniques.
Large Vision & Language models pretrained on web-scale data provide representations that are invaluable for numerous V&L problems. However, it is unclear how they can be extended to reason about user-specific visual concepts in unstructured language. This problem arises in multiple domains, from personalized image retrieval to personalized interaction with smart devices. We introduce a new learning setup called Personalized Vision & Language (PerVL) with two new benchmark datasets for retrieving and segmenting user-specific (""""personalized"""") concepts “in the wild"""". In PerVL, one should learn personalized concepts (1) independently of the downstream task (2) allowing a pretrained model to reason about them with free language, and (3) without providing personalized negative examples. We propose an architecture for solving PerVL that operates by expanding the input vocabulary of a pretrained model with new word embeddings for the personalized concepts. The model can then simply employ them as part of a sentence. We demonstrate that our approach learns personalized visual concepts from a few examples and effectively applies them in image retrieval and semantic segmentation using rich textual queries. For example the model improves MRR by 51.1% (28.4% vs 18.8%) compared to the strongest baseline.
We study few-shot semantic segmentation that aims to segment a target object from a query image when provided with a few annotated support images of the target class. Several recent methods resort to a feature masking (FM) technique to discard irrelevant feature activations which eventually facilitates the reliable prediction of segmentation mask. A fundamental limitation of FM is the inability to preserve the fine-grained spatial details that affect the accuracy of segmentation mask, especially for small target objects. In this paper, we develop a simple, effective, and efficient approach to enhance feature masking (FM). We dub the enhanced FM as hybrid masking (HM). Specifically, we compensate for the loss of fine-grained spatial details in FM technique by investigating and leveraging a complementary basic input masking method. Experiments have been conducted on three publicly available benchmarks with strong few-shot segmentation (FSS) baselines. We empirically show improved performance against the current state-of-the-art methods by visible margins across different benchmarks. Our code and trained models are available at: https://github.com/moonsh/HM-Hybrid-Masking
Dual Contrastive Learning with Anatomical Auxiliary Supervision for Few-Shot Medical Image Segmentation
PDF ↗Few-shot semantic segmentation is a promising solution for scarce data scenarios, especially for medical imaging challenges with limited training data. However, most of the existing few-shot segmentation methods tend to over rely on the images containing target classes, which may hinder its utilization of medical imaging data. In this paper, we present a few-shot segmentation model that employs anatomical auxiliary information from medical images without target classes for dual contrastive learning. The dual contrastive learning module performs comparison among vectors from the perspectives of prototypes and contexts, to enhance the discriminability of learned features and the data utilization. Besides, to distinguish foreground features from background features more friendly, a constrained iterative prediction module is designed to optimize the segmentation of the query image. Experiments on two medical image datasets show that the proposed method achieves performance comparable to state-of-the-art methods.
To bridge the gap between supervised semantic segmentation and real-world applications that acquire one model to recognize arbitrary new concepts, recent zero-shot segmentation attracts a lot of attention by exploring the relationships between unseen and seen object categories, yet requiring large amounts of densely-annotated data with diverse base classes. In this paper, we propose a new open-world semantic segmentation pipeline that makes the first attempt to learn to segment semantic objects of various open-world categories without any efforts on dense annotations, by purely exploiting the image-caption data that naturally exist on the Internet. Our method, Vision-language-driven Semantic Segmentation (ViL-Seg), employs an image and a text encoder to generate visual and text embeddings for the image-caption data, with two core components that endow its segmentation ability: First, the image encoder is jointly trained with a vision-based contrasting and a cross-modal contrasting, which encourage the visual embeddings to preserve both fine-grained semantics and high-level category information that are crucial for the segmentation task. Furthermore, an online clustering head is devised over the image encoder, which allows us to dynamically segment the visual embeddings into distinct semantic groups such that they can be classified by comparing with various text embeddings to complete our segmentation pipeline. Experiments show that without using any data with dense annotations, our method can directly segment objects of arbitrary categories, outperforming zero-shot segmentation methods that require data labeling on three benchmark datasets.
Research into Few-shot Semantic Segmentation (FSS) has attracted great attention, with the goal to segment target objects in a query image given only a few annotated support images of the target class. A key to this challenging task is to fully utilize the information in the support images by exploiting fine-grained correlations between the query and support images. However, most existing approaches either compressed the support information into a few class-wise prototypes, or used partial support information (e.g., only foreground) at the pixel level, causing non-negligible information loss. In this paper, we propose Dense pixel-wise Cross-query-and-support Attention weighted Mask Aggregation (DCAMA), where both foreground and background support information are fully exploited via multi-level pixel-wise correlations between paired query and support features. Implemented with the scaled dot-product attention in the Transformer architecture, DCAMA treats every query pixel as a token, computes its similarities with all support pixels, and predicts its segmentation label as an additive aggregation of all the support pixels’ labels--weighted by the similarities. Based on the unique formulation of DCAMA, we further propose efficient and effective one-pass inference for n-shot segmentation, where pixels of all support images are collected for the mask aggregation at once. Experiments show that our DCAMA significantly advances the state of the art on standard FSS benchmarks of PASCAL-5i, COCO-20i, and FSS-1000, e.g., with 3.1%, 9.7%, and 3.6% absolute improvements in 1-shot mIoU over previous best records. Ablative studies also verify the design DCAMA.
Training semantic segmentation models with few annotated samples has great potential in various real-world applications. For the few-shot segmentation task, the main challenge is how to accurately measure the semantic correspondence between the support and query samples with limited training data. To address this problem, we propose to aggregate the learnable covariance matrices with a deformable 4D Transformer to effectively predict the segmentation map. Specifically, in this work, we first devise a novel hard example mining mechanism to learn covariance kernels for the Gaussian process. The learned covariance kernel functions have great advantages over existing cosine similarity-based methods in correspondence measurement. Based on the learned covariance kernels, an efficient doubly deformable 4D Transformer module is designed to adaptively aggregate feature similarity maps into segmentation results. By combining these two designs, the proposed method can not only set new state-of-the-art performance on public benchmarks, but also converge extremely faster than existing methods. Experiments on three public datasets have demonstrated the effectiveness of our method.
Few-Shot Learning (FSL) alleviates the data shortage challenge via embedding discriminative target-aware features among plenty seen (base) and few unseen (novel) labeled samples. Most feature embedding modules in recent FSL methods are specially designed for corresponding learning tasks (e.g., classification, segmentation, and object detection), which limits the utility of embedding features. To this end, we propose a light and universal module named transformer-based Semantic Filter (tSF), which can be applied for different FSL tasks. The proposed tSF redesigns the inputs of a transformer-based structure by a semantic filter, which not only embeds the knowledge from whole base set to novel set but also filters semantic features for target category. Furthermore, the parameters of tSF is equal to half of a standard transformer block (less than 1M). In the experiments, our tSF is able to boost the performances in different classic few-shot learning tasks (about 2% improvement), especially outperforms the state-of-the-arts on multiple benchmark datasets in few-shot classification task.