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Applications · Physics

Ana Rivera Him, Anvita Bhagavathula, Alvaro Carbonero, Priya Donti

Power flow (PF) calculations are the backbone of real-time grid operations, across workflows such as contingency analysis (where repeated PF evaluations assess grid security under outages) and topology optimization (which involves PF-based searches over combinatorially large action spaces). Running these calculations at operational timescales or across large evaluation spaces remains a major computational bottleneck. Additionally, growing uncertainty in power system operations from the integration of renewables and climate-induced extreme weather also calls for tools that can accurately and efficiently simulate a wide range of scenarios and operating conditions. Machine learning methods offer a potential speedup over traditional solvers, but their performance has not been systematically assessed on benchmarks that capture real-world variability. This paper introduces PF∆, a benchmark dataset for power flow that captures diverse variations in load, generation, and topology. PF∆ contains 859,800 solved power flow instances spanning six different bus system sizes, capturing three types of contingency scenarios (N , N –1, and N –2), and including close-to-infeasible cases near steady-state voltage stability limits. We evaluate traditional solvers and GNN-based methods, highlighting key areas where existing approaches struggle, and identifying open problems for future research. Our dataset is available at https://huggingface.co/datasets/pfdelta/pfdelta/tree/main and our code with data generation scripts and model implementations is at https: //github.com/MOSSLab-MIT/pfdelta

Computer Vision · Vision Models & Multimodal

Vardhan Dongre, Chi Gui, Shubham Garg, Hooshang Nayyeri, Gokhan Tur, Dilek Hakkani-Tur, Vikram Adve

We introduce MIRAGE, a new benchmark for multimodal expert-level reasoning and decision-making in consultative interaction settings. Designed for the domain of agriculture, MIRAGE captures the full complexity of expert consultations by combining natural user queries, expert-authored responses, and image-based context, offering a high-fidelity benchmark for evaluating models on grounded reasoning, clarification strategies, and long-form generation in a real-world, knowledge-intensive domain. Grounded in over 35,000 real user-expert interactions, and curated through a carefully designed multi-step pipeline, MIRAGE spans diverse crop health, pest diagnosis, and crop management scenarios. The benchmark includes more than 7,000 unique biological entities, covering plant species, pests, and diseases, making it one of the most taxonomically diverse benchmarks available for vision-language models in real-world expert-guided domains. Unlike existing benchmarks that rely on well-specified user inputs, MIRAGE features underspecified, context-rich scenarios, requiring models to infer latent knowledge gaps and either proactively guide the interaction or respond. Our benchmark comprises two core components. The Single-turn Challenge to reason over a single user turn and image set, identify relevant entities, infer causal explanations, and generate actionable recommendations; and a Multi-Turn challenge for dialogue state tracking, goal-driven generation, and expert-level conversational decision-making. We evaluate more than 20 closed and open-source frontier vision-language models (VLMs), using three reasoning language models as evaluators, highlighting the significant challenges posed by MIRAGE in both single-turn and multi-turn interaction settings. Even the advanced GPT4.1 and GPT4o models achieve 44.6% and 40.9% accuracy, respectively, indicating significant room for improvement.

Data-centric AI · Data-centric AI methods and tools

Sk Tanzir Mehedi, Raja Jurdak, Chadni Islam, Gowri Sankar Ramachandran

Securing software supply chains is a growing challenge due to the inadequacy of existing datasets in capturing the complexity of next-gen attacks, such as multiphase malware execution, remote access activation, and dynamic payload generation. Existing datasets, which rely on metadata inspection and static code analysis, are inadequate for detecting such attacks. This creates a critical gap because these datasets do not capture what happens during and after a package is installed. To address this gap, we present QUT-DV25, a dynamic analysis dataset specifically designed to support and advance research on detecting and mitigating supply chain attacks within the Python Package Index (PyPI) ecosystem. This dataset captures install and post-install-time traces from 14,271 Python packages, of which 7,127 are malicious. The packages are executed in an isolated sandbox environment using an extended Berkeley Packet Filter (eBPF) kernel and user-level probes. It captures 36 real-time features, that includes system calls, network traffic, resource usages, directory access patterns, dependency logs, and installation behaviors, enabling the study of next-gen attack vectors. ML analysis using the QUT-DV25 dataset identified four malicious PyPI packages previously labeled as benign, each with thousands of downloads. These packages deployed covert remote access and multi-phase payloads, were reported to PyPI maintainers, and subsequently removed. This highlights the practical value of QUT-DV25, as it outperforms reactive, metadata, and static datasets, offering a robust foundation for developing and benchmarking advanced threat detection within the evolving software supply chain ecosystem.

Applications

Tianbao Xie, Jiaqi Deng, Xiaochuan Li, Junlin Yang, Haoyuan Wu, Jixuan Chen, Wenjing Hu, Xinyuan Wang, Yuhui Xu, Zekun Wang 等

Graphical user interface (GUI) grounding, the ability to map natural language instructions to specific actions on graphical user interfaces, remains a critical bottleneck in computer use agent development. Current benchmarks oversimplify grounding tasks as short referring expressions, failing to capture the complexity of real-world interactions that require software commonsense, layout understanding, and fine-grained manipulation capabilities. To address these limitations, we introduce OSWorld-G, a comprehensive benchmark comprising 564 finely annotated samples across diverse task types including text matching, element recognition, layout understanding, and precise manipulation. Additionally, we synthesize and release the largest computer use grounding dataset Jedi, which contains 4 million examples through multi-perspective decoupling of tasks. Our multi-scale models trained on Jedi demonstrate its effectiveness by outperforming existing approaches on ScreenSpot-v2, ScreenSpot-Pro, and our OSWorld-G. Furthermore, we demonstrate that improved grounding with Jedi directly enhances agentic capabilities of general foundation models on complex computer tasks with state-of-the-art performance, improving from 23% to 51% on OSWorld. Through detailed ablation studies, we identify key factors contributing to grounding performance and verify that combining specialized data for different interface elements enables compositional generalization to novel interfaces. All benchmark, data, checkpoints, and code are open-sourced and available at https://osworld-grounding.github.io.

General Machine Learning · Everything Else

Yuxuan Zhu, Tengjun Jin, Yada Pruksachatkun, Andy Zhang, Shu Liu, Sasha Cui, Sayash Kapoor, Shayne Longpre, Kevin Meng, Rebecca Weiss 等

Benchmarks are essential for quantitatively tracking progress in AI. As AI agents become increasingly capable, researchers and practitioners have introduced agentic benchmarks to evaluate agents on complex, real-world tasks. These benchmarks typically measure agent capabilities by evaluating task outcomes via specific reward designs. However, we show that many agentic benchmarks have issues in task setup or reward design. For example, SWE-bench-Verified uses insufficient test cases, while $\tau$-bench counts empty responses as successes. Such issues can lead to under- or overestimation of agents’ performance by up to 100% in relative terms. To make agentic evaluation rigorous, we introduce the Agentic Benchmark Checklist (ABC), a set of guidelines that we synthesized from our benchmark-building experience, a survey of best practices, and previously reported issues. When applied to CVE-Bench, a benchmark with a particularly complex evaluation design, ABC reduces performance overestimation by 33%.

Computer Vision · Vision Models & Multimodal

Chongjun Tu, Lin Zhang, pengtao chen, Peng Ye, Xianfang Zeng, Wei Cheng, Gang Yu, Tao Chen

Multimodal Large Language Models (MLLMs) have shown impressive video content understanding capabilities but struggle with fine-grained motion comprehension. To comprehensively assess the motion understanding ability of existing MLLMs, we introduce FAVOR-Bench, which comprises 1,776 videos from both ego-centric and third-person perspectives and enables assessment through both close-ended and open-ended tasks. For close-ended evaluation, we carefully design 8,184 multiple-choice question-answer pairs spanning six distinct sub-tasks. For open-ended evaluation, we employ the GPT-assisted evaluation and develop a novel cost-efficient LLM-free assessment method, where the latter can enhance benchmarking interpretability and accessibility. Comprehensive experiments with21 state-of-the-art MLLMs reveal significant limitations in their ability to comprehend and describe detailed temporal dynamics in video motions. To alleviate this limitation, we further build FAVOR-Train, a dataset of 17,152 videos with fine-grained motion annotations. Finetuning Qwen2.5-VL on FAVOR-Train yields consistent improvements on motion-related tasks across TVBench, MotionBenchand our FAVOR-Bench. Our assessment results demonstrate that the proposed FAVOR-Bench and FAVOR-Train provide valuable tools for the community to develop more powerful video understanding models.

Computer Vision · Vision Models & Multimodal

Beibei Lin, Zifeng Yuan, Tingting Chen

Polarization images provide rich physical information that is fundamentally absent from standard RGB images, benefiting a wide range of computer vision applications such as reflection separation and material classification. However, the acquisition of polarization images typically requires additional optical components, which increases both the cost and the complexity of the applications. To bridge this gap, we introduce a new task: RGB-to-polarization image estimation, which aims to infer polarization information directly from RGB images. In this work, we establish the first comprehensive benchmark for this task by leveraging existing polarization datasets and evaluating a diverse set of state-of-the-art deep learning models, including both restoration-oriented and generative architectures. Through extensive quantitative and qualitative analysis, our benchmark not only establishes the current performance ceiling of RGB-to-polarization estimation, but also systematically reveals the respective strengths and limitations of different model families — such as direct reconstruction versus generative synthesis, and task-specific training versus large-scale pre-training. In addition, we provide some potential directions for future research on polarization estimation. This benchmark is intended to serve as a foundational resource to facilitate the design and evaluation of future methods for polarization estimation from standard RGB inputs.

Applications · Chemistry and Drug Discovery

Ziyi Yang, Hanyuan Xie, Yinjun Jia, Xiangzhe Kong, Jiqing Zheng, Ziting Zhang, Yang Liu, Lei Liu, Yanyan Lan

Cyclic peptides exhibit better binding affinity and proteolytic stability compared to their linear counterparts. However, the development of cyclic peptide design models is hindered by the scarcity of data. To address this, we introduce **CPSea**(**C**yclic **P**eptide **Sea**), a dataset of 2.71 million cyclic peptide-receptor complexes, curated through systematic mining of the AlphaFold Database (AFDB). Our pipeline extracts compact domains from AFDB, identifies cyclization sites using the $\beta$-carbon (C$_\beta$) distance thresholds, and applies multi-stage filtering to ensure structure fidelity and binding compatibility. Compared with experimental data of cyclic peptides, CPSea shows similar distributions in metrics on structure fidelity and wet-lab compatibility. To our knowledge, CPSea is the largest cyclic peptide-receptor dataset to date, enabling end-to-end model training for the first time. The dataset also showcases the feasibility of simulating inter-chain interactions using intra-chain interactions, expanding available resources for machine-learning models on protein-protein interactions. The dataset and relevant scripts are accessible on GitHub ([https://github.com/YZY010418/CPSea](https://github.com/YZY010418/CPSea)).

Deep Learning · Generative Models and Autoencoders

Jae-Won Chung, Jeff J. Ma, Ruofan Wu, Jiachen Liu, Oh Jun Kweon, Yuxuan Xia, Zhiyu Wu, Mosharaf Chowdhury

As the adoption of Generative AI in real-world services grow explosively, energy has emerged as a critical bottleneck resource. However, energy remains a metric that is often overlooked, under-explored, or poorly understood in the context of building ML systems. We present the ML.ENERGY Benchmark, a benchmark suite and tool for measuring inference energy consumption under realistic service environments, and the corresponding ML.ENERGY Leaderboard, which have served as a valuable resource for those hoping to understand and optimize the energy consumption of their generative AI services. In this paper, we explain four key design principles for benchmarking ML energy we have acquired over time, and then describe how they are implemented in the ML.ENERGY Benchmark. We then highlight results from the early 2025 iteration of the benchmark, including energy measurements of 40 widely used model architectures across 6 different tasks, case studies of how ML design choices impact energy consumption, and how automated optimization recommendations can lead to significant (sometimes more than 40%) energy savings without changing what is being computed by the model. The ML.ENERGY Benchmark is open-source and can be easily extended to various customized models and application scenarios.

General Machine Learning · Everything Else

Daniel O'Malley, Manish Bhattarai, Nishath Ranasinghe, Erick Draayer, Javier E. Santos

We present a novel benchmark designed to rigorously evaluate the capabilities of large language models (LLMs) in mathematical reasoning and algorithmic code synthesis tasks. The benchmark comprises integer sequence generation tasks sourced from the Online Encyclopedia of Integer Sequences (OEIS), testing LLMs' abilities to accurately and efficiently generate Python code to compute these sequences without using lookup tables. Our comprehensive evaluation includes leading models from OpenAI (including the specialized reasoning-focused o-series), Anthropic, Meta, and Google across a carefully selected set of 1000 OEIS sequences categorized as ``easy'' or ``hard.'' Half of these sequences are classical sequences from the early days of OEIS and half were recently added to avoid contamination with the models' training data. To prevent models from exploiting memorized sequence values, we introduce an automated cheating detection mechanism that flags usage of lookup tables, validated by comparison with human expert evaluations. Experimental results demonstrate that reasoning-specialized models (o3, o3-mini, o4-mini from OpenAI, and Gemini 2.5-pro from Google) achieve substantial improvements in accuracy over non-reasoning models, especially on more complex tasks. However, overall model performance on the hard sequences is poor, highlighting persistent challenges in algorithmic reasoning. Our benchmark provides important insights into the strengths and limitations of state-of-the-art LLMs, particularly emphasizing the necessity for further advancements to reliably solve complex mathematical reasoning tasks algorithmically.

Applications · Language, Speech and Dialog

Weizhe Yuan, Jane Yu, Song Jiang, Karthik Padthe, Yang Li, Dong Wang, Ilia Kulikov, Kyunghyun Cho, Yuandong Tian, Jason Weston 等

Scaling reasoning capabilities beyond traditional domains such as math and coding is hindered by the lack of diverse and high-quality questions. To overcome this limitation, we introduce a scalable approach for generating diverse and challenging reasoning questions, accompanied by reference answers. We present NaturalReasoning, a comprehensive dataset comprising 2.8 million questions that span multiple domains, including STEM fields (e.g., Physics, Computer Science), Economics, Social Sciences, and more. We demonstrate the utility of the questions in NaturalReasoning through knowledge distillation experiments which show that NaturalReasoning can effectively elicit and transfer reasoning capabilities from a strong teacher model. Furthermore, we demonstrate that NaturalReasoning is also effective for unsupervised self-training using external reward models or self-rewarding.

Applications · Neuroscience, Cognitive Science

Xiaojun Ning, Jing Wang, Zhiyang Feng, Tianzuo Xin, Shuo Zhang, Shaoqi Zhang, Zheng Lian, Yi Ding, Youfang Lin, Ziyu Jia

Affective brain-computer interfaces (aBCIs) play a crucial role in personalized human–computer interaction and neurofeedback modulation. To develop practical and effective aBCI paradigms and to investigate the spatial-temporal dynamics of brain activity under emotional inducement, portable electroencephalography (EEG) signals have been widely adopted. To further enhance spatial-temporal perception, functional near-infrared spectroscopy (fNIRS) has attracted increasing interest in the aBCI field and has been explored in combination with EEG. However, existing datasets typically provide only static fixation labels, overlooking the dynamic changes in subjects' emotions. Notably, some studies have attempted to collect continuously annotated emotional data, but they have recorded only peripheral physiological signals without directly observing brain activity, limiting insight into underlying neural states under different emotions. To address these challenges, we present the Real-time labeled EEG-fNIRS Dataset (REFED). To the best of our knowledge, this is the first EEG-fNIRS dataset with real-time dynamic emotional annotations. REFED simultaneously records brain signals from both EEG and fNIRS modalities while providing continuous, real-time annotations of valence and arousal. The results of the data analysis demonstrate the effectiveness of emotion inducement and the reliability of real-time annotation. This dataset offers the possibility for studying the neurovascular coupling mechanism under emotional evolution and for developing dynamic, robust affective BCIs.

Computer Vision · Vision Models & Multimodal

Xue-Feng Zhu, Tianyang Xu, Yifan Pan, Jinjie Gu, Xi Li, Jiwen Lu, Xiaojun Wu, Josef Kittler

Existing multi-modal object tracking approaches primarily focus on dual-modal paradigms, such as RGB-Depth or RGB-Thermal, yet remain challenged in complex scenarios due to limited input modalities. To address this gap, this work introduces a novel multi-modal tracking task that leverages three complementary modalities, including visible RGB, Depth (D), and Thermal Infrared (TIR), aiming to enhance robustness in complex scenarios. To support this task, we construct a new multi-modal tracking dataset, coined RGBDT500, which consists of 500 videos with synchronised frames across the three modalities. Each frame provides spatially aligned RGB, depth, and thermal infrared images with precise object bounding box annotations.Furthermore, we propose a novel multi-modal tracker, dubbed RDTTrack.RDTTrack integrates tri-modal information for robust tracking by leveraging a pretrained RGB-only tracking model and prompt learning techniques.In specific, RDTTrack fuses thermal infrared and depth modalities under a proposed orthogonal projection constraint, then integrates them with RGB signals as prompts for the pre-trained foundation tracking model, effectively harmonising tri-modal complementary cues.The experimental results demonstrate the effectiveness and advantages of the proposed method, showing significant improvements over existing dual-modal approaches in terms of tracking accuracy and robustness in complex scenarios. The dataset and source code are publicly available at https://xuefeng-zhu5.github.io/RGBDT500.

Computer Vision · Vision Models & Multimodal

Christoph Schuhmann, Robert Kaczmarczyk, Gollam Rabby, Maurice Kraus, Felix Friedrich, Huu Nguyen, Kalyan Sai Krishna, Kourosh Nadi, Kristian Kersting, Sören Auer

Effective human-AI interaction relies on AI's ability to accurately perceive and interpret human emotions. Current benchmarks for vision and vision-language models are severely limited, offering a narrow emotional spectrum that overlooks nuanced states (e.g., bitterness, intoxication) and fails to distinguish subtle differences between related feelings (e.g., shame vs. embarrassment). Existing datasets also often use uncontrolled imagery with occluded faces and lack demographic diversity, risking significant bias. To address these critical gaps, we introduce EmoNet Face, a comprehensive benchmark suite. EmoNet Face features: (1) A novel 40-category emotion taxonomy, meticulously derived from foundational research to capture finer details of human emotional experiences. (2) Three large-scale, AI-generated datasets (EmoNet HQ, Binary, and Big) with explicit, full-face expressions and controlled demographic balance across ethnicity, age, and gender. (3) Rigorous, multi-expert annotations for training and high-fidelity evaluation. (4) We build Empathic Insight Face, a model achieving human-expert-level performance on our benchmark. The publicly released EmoNet Face suite—taxonomy, datasets, and model—provides a robust foundation for developing and evaluating AI systems with a deeper understanding of human emotions.

Social Aspects · Privacy-preserving Statistics and Machine Learning

Shlomi Hod, Lucas Rosenblatt, Julia Stoyanovich

Differentially private (DP) machine learning often relies on the availability of public data for tasks like privacy-utility trade-off estimation, hyperparameter tuning, and pretraining. While public data assumptions may be reasonable in text and image data, they are less likely to hold for tabular data due to tabular data heterogeneity across domains. We propose leveraging powerful priors to address this limitation; specifically, we synthesize realistic tabular data directly from schema-level specifications -- such as variable names, types, and permissible ranges -- without ever accessing sensitive records. To that end, this work introduces the notion of ``surrogate'' public data -- datasets generated independently of sensitive data, which consume no privacy loss budget and are constructed solely from publicly available schema or metadata. Surrogate public data are intended to encode plausible statistical assumptions (informed by publicly available information) into a dataset with many downstream uses in private mechanisms. We automate the process of generating surrogate public data with large language models (LLMs); in particular, we propose two methods: direct record generation as CSV files, and automated structural causal model (SCM) construction for sampling records. Through extensive experiments, we demonstrate that surrogate public tabular data can effectively replace traditional public data when pretraining differentially private tabular classifiers. To a lesser extent, surrogate public data are also useful for hyperparameter tuning of DP synthetic data generators, and for estimating the privacy-utility tradeoff.

Applications · Health

Yinghao Zhu, Ziyi He, Haoran Hu, Xiaochen Zheng, Xichen Zhang, Wang, Junyi Gao, Liantao Ma, Lequan Yu

The rapid advancement of Large Language Models (LLMs) has stimulated interest in multi-agent collaboration for addressing complex medical tasks. However, the practical advantages of multi-agent collaboration approaches remain insufficiently understood. Existing evaluations often lack generalizability, failing to cover diverse tasks reflective of real-world clinical practice, and frequently omit rigorous comparisons against both single-LLM-based and established conventional methods. To address this critical gap, we introduce MedAgentBoard, a comprehensive benchmark for the systematic evaluation of multi-agent collaboration, single-LLM, and conventional approaches. MedAgentBoard encompasses four diverse medical task categories: (1) medical (visual) question answering, (2) lay summary generation, (3) structured Electronic Health Record (EHR) predictive modeling, and (4) clinical workflow automation, across text, medical images, and structured EHR data. Our extensive experiments reveal a nuanced landscape: while multi-agent collaboration demonstrates benefits in specific scenarios, such as enhancing task completeness in clinical workflow automation, it does not consistently outperform advanced single LLMs (e.g., in textual medical QA) or, critically, specialized conventional methods that generally maintain better performance in tasks like medical VQA and EHR-based prediction. MedAgentBoard offers a vital resource and actionable insights, emphasizing the necessity of a task-specific, evidence-based approach to selecting and developing AI solutions in medicine. It underscores that the inherent complexity and overhead of multi-agent collaboration must be carefully weighed against tangible performance gains. All code, datasets, detailed prompts, and experimental results are open-sourced at [this link](https://medagentboard.netlify.app/).

General Machine Learning · Everything Else

Lin Xu, Xinyun Yuan, Yuxuan Liang, Suwan Yin, Yuankai Wu

We introduce Aeolus, a large-scale Multi-modal Flight Delay Dataset designed to advance research on flight delay prediction and support the development of foundation models for tabular data. Existing datasets in this domain are typically limited to flat tabular structures and fail to capture the spatiotemporal dynamics inherent in delay propagation. Aeolus addresses this limitation by providing three aligned modalities: (i) a tabular dataset with rich operational, meteorological, and airportlevel features for over 50 million flights; (ii) a flight chain module that models delay propagation along sequential flight legs, capturing upstream and downstream dependencies; and (iii) a flight network graph that encodes shared aircraft, crew, and airport resource connections, enabling cross-flight relational reasoning. The dataset is carefully constructed with temporal splits, comprehensive features, and strict leakage prevention to support realistic and reproducible machine learning evaluation. Aeolus supports a broad range of tasks, including regression, classification, temporal structure modeling, and graph learning, serving as a unified benchmark across tabular, sequential, and graph modalities. We release baseline experiments and preprocessing tools to facilitate adoption. Aeolus fills a key gap for both domain-specific modeling and general-purpose structured data research.Our source code and data can be accessed at https://github.com/Flnny/Delay-data

Deep Learning · Algorithms

Ashwinee Panda, Vatsal Baherwani, Zain Sarwar, Benjamin Thérien, Sambit Sahu, Tom Goldstein, Supriyo Chakraborty

Mixture of Experts (MoE) pretraining is more scalable than dense Transformer pretraining, because MoEs learn to route inputs to a sparse set of their feedforward parameters. However, this means that MoEs only receive a sparse backward update, leading to training instability and suboptimal performance. We present a lightweight approximation method that gives the MoE router a dense gradient update while continuing to sparsely activate its parameters. Our method, which we refer to as Default MoE, substitutes missing expert activations with default outputs consisting of an exponential moving average of expert outputs previously seen over the course of training. This allows the router to receive signals from every expert for each token, leading to significant improvements in training performance. Our Default MoE outperforms standard TopK routing in a variety of settings without requiring significant computational overhead.

Applications · Climate

Zhihao Wang, Cooper Li, Ruichen Wang, Lei Ma, George Hurtt, Xiaowei Jia, Gengchen Mai, Zhili Li, Yiqun Xie

Monitoring individual tree mortality at scale has been found to be crucial for understanding forest loss, ecosystem resilience, carbon fluxes, and climate-induced impacts. However, the fine-granularity monitoring faces major challenges on both the data and methodology sides because: (1) finding isolated individual-level tree deaths requires high-resolution remote sensing images with broad coverage, and (2) compared to regular geo-objects (e.g., buildings), dead trees often exhibit weaker contrast and high variability across tree types, landscapes and ecosystems. Existing datasets on tree mortality primarily rely on moderate-resolution satellite imagery (e.g., 30m resolution), which aims to detect large-patch wipe-outs but is unable to recognize individual-level tree mortality events. Several efforts have explored alternatives via very-high-resolution drone imagery. However, drone images are highly expensive and can only be collected at local scales, which are therefore not suitable for national-scale applications and beyond. To bridge the gaps,we introduce TreeFinder, the first high-resolution remote sensing benchmark dataset designed for individual-level tree mortality mapping across the Contiguous United States (CONUS). Specifically, the dataset uses NAIP imagery at 0.6m resolution that provides wall-to-wall coverage of the entire CONUS. TreeFinder contains images with pixel-level labels generated via extensive manual annotation that covers forested areas in 48 states with over 23,000 hectares. All annotations are rigorously validated using multi-temporal NAIP images and auxiliary vegetation indices from remote sensing imagery. Moreover, TreeFinder includes multiple evaluation scenarios to test the models' ability in generalizing across different geographic regions, climate zones, and forests with different plant function types. Finally, we develop benchmarks using a suite of semantic segmentation models, including both convolutional architectures and more recent foundation models based on vision transformers for general and remote sensing images. Our dataset and code are publicly available on Kaggle and GitHub: https://www.kaggle.com/datasets/zhihaow/tree-finder and https://github.com/zhwang0/treefinder.

Devin Lange, Pengwei Sui, Shanghua Gao, Marinka Zitnik, Nils Gehlenborg

Biomedical research data portals are essential resources for scientific inquiry, and interactive exploratory visualizations are an integral component for querying such data repositories. Increasingly, machine learning is being integrated into visualization systems to create natural language interfaces where questions about data can be answered with visualizations, and follow-up questions can build on the previous state. This paper introduces a framework that takes abstract low-level questions about data and a visualization grammar specification that can answer such a question, reifies them with data entities and fields that meet certain constraints, and paraphrases the question language to produce the final collection of realized data-question-visualization triplets. Furthermore, we can link these foundational elements together to construct chains of queries, visualizations, and follow-up queries. We developed an open-source review interface for evaluating the results of these datasets. We applied this framework to five biomedical research data repositories, resulting in DQVis, a dataset of 1.08 million data-question-visualization triplets and 11.4 thousand two-step question samples. Five visualization experts provided feedback on the generated dataset through our review interface. We present a summary of their input and publish the full reviews as an additional resource alongside the dataset.The DQVis dataset and generation code are available at https://huggingface.co/datasets/HIDIVE/DQVis and https://github.com/hms-dbmi/DQVis-Generation.