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Applications/Neuroscience, Cognitive Science

Drew Linsley, Ivan F Rodriguez Rodriguez, Thomas FEL, Michael Arcaro, Saloni Sharma, Margaret Livingstone, Thomas Serre

One of the most impactful findings in computational neuroscience over the past decade is that the object recognition accuracy of deep neural networks (DNNs) correlates with their ability to predict neural responses to natural images in the inferotemporal (IT) cortex. This discovery supported the long-held theory that object recognition is a core objective of the visual cortex, and suggested that more accurate DNNs would serve as better models of IT neuron responses to images. Since then, deep learning has undergone a revolution of scale: billion parameter-scale DNNs trained on billions of images are rivaling or outperforming humans at visual tasks including object recognition. Have today's DNNs become more accurate at predicting IT neuron responses to images as they have grown more accurate at object recognition?Surprisingly, across three independent experiments, we find that this is not the case. DNNs have become progressively worse models of IT as their accuracy has increased on ImageNet. To understand why DNNs experience this trade-off and evaluate if they are still an appropriate paradigm for modeling the visual system, we turn to recordings of IT that capture spatially resolved maps of neuronal activity elicited by natural images. These neuronal activity maps reveal that DNNs trained on ImageNet learn to rely on different visual features than those encoded by IT and that this problem worsens as their accuracy increases. We successfully resolved this issue with the neural harmonizer, a plug-and-play training routine for DNNs that aligns their learned representations with humans. Our results suggest that harmonized DNNs break the trade-off between ImageNet accuracy and neural prediction accuracy that assails current DNNs and offer a path to more accurate models of biological vision. Our work indicates that the standard approach for modeling IT with task-optimized DNNs needs revision, and other biological constraints, including human psychophysics data, are needed to accurately reverse-engineer the visual cortex.

Applications/Genetics, Cell Biology, etc

Zitong Sam Chen, Chau Pham, Siqi Wang, Michael Doron, Nikita Moshkov, Bryan Plummer, Juan C. Caicedo

Most neural networks assume that input images have a fixed number of channels (three for RGB images). However, there are many settings where the number of channels may vary, such as microscopy images where the number of channels changes depending on instruments and experimental goals. Yet, there has not been a systemic attempt to create and evaluate neural networks that are invariant to the number and type of channels. As a result, trained models remain specific to individual studies and are hardly reusable for other microscopy settings. In this paper, we present a benchmark for investigating channel-adaptive models in microscopy imaging, which consists of 1) a dataset of varied-channel single-cell images, and 2) a biologically relevant evaluation framework. In addition, we adapted several existing techniques to create channel-adaptive models and compared their performance on this benchmark to fixed-channel, baseline models. We find that channel-adaptive models can generalize better to out-of-domain tasks and can be computationally efficient. We contribute a curated dataset and an evaluation API to facilitate objective comparisons in future research and applications.

Applications/Genetics, Cell Biology, etc

Pascal Notin, Aaron Kollasch, Daniel Ritter, Lood van Niekerk, Steffanie Paul, Han Spinner, Nathan Rollins, Ada Shaw, Rose Orenbuch, Ruben Weitzman 等

Predicting the effects of mutations in proteins is critical to many applications, from understanding genetic disease to designing novel proteins to address our most pressing challenges in climate, agriculture and healthcare. Despite an increase in machine learning-based protein modeling methods, assessing their effectiveness is problematic due to the use of distinct, often contrived, experimental datasets and variable performance across different protein families. Addressing these challenges requires scale. To that end we introduce ProteinGym v1.0, a large-scale and holistic set of benchmarks specifically designed for protein fitness prediction and design. It encompasses both a broad collection of over 250 standardized deep mutational scanning assays, spanning millions of mutated sequences, as well as curated clinical datasets providing high-quality expert annotations about mutation effects. We devise a robust evaluation framework that combines metrics for both fitness prediction and design, factors in known limitations of the underlying experimental methods, and covers both zero-shot and supervised settings. We report the performance of a diverse set of over 40 high-performing models from various subfields (eg., mutation effects, inverse folding) into a unified benchmark. We open source the corresponding codebase, datasets, MSAs, structures, predictions and develop a user-friendly website that facilitates comparisons across all settings.

Probabilistic Methods/Gaussian Processes

Amir Hossein Hosseini Akbarnejad, Gilbert Bigras, Nilanjan Ray

The analogy between Gaussian processes (GPs) and deep artificial neural networks (ANNs) has received a lot of interest, and has shown promise to unbox the blackbox of deep ANNs. Existing theoretical works put strict assumptions on the ANN (e.g. requiring all intermediate layers to be wide, or using specific activation functions). Accommodating those theoretical assumptions is hard in recent deep architectures, and those theoretical conditions need refinement as new deep architectures emerge. In this paper we derive an evidence lower-bound that encourages the GP's posterior to match the ANN's output without any requirement on the ANN. Using our method we find out that on 5 datasets, only a subset of those theoretical assumptions are sufficient. Indeed, in our experiments we used a normal ResNet-18 or feed-forward backbone with a single wide layer in the end. One limitation of training GPs is the lack of scalability with respect to the number of inducing points. We use novel computational techniques that allow us to train GPs with hundreds of thousands of inducing points and with GPU acceleration. As shown in our experiments, doing so has been essential to get a close match between the GPs and the ANNs on 5 datasets. We implement our method as a publicly available tool called GPEX: https://github.com/amirakbarnejad/gpex. On 5 datasets (4 image datasets, and 1 biological dataset) and ANNs with 2 types of functionality (classifier or attention-mechanism) we were able to find GPs whose outputs closely match those of the corresponding ANNs. After matching the GPs to the ANNs, we used the GPs' kernel functions to explain the ANNs' decisions. We provide more than 200 explanations (around 30 in the paper and the rest in the supplementary) which are highly interpretable by humans and show the ability of the obtained GPs to unbox the ANNs' decisions.

Applications/Computer Vision

Zitang Sun, Yen-Ju Chen, Yung-Hao Yang, Shin'ya Nishida

Visual motion processing is essential for humans to perceive and interact with dynamic environments. Despite extensive research in cognitive neuroscience, image-computable models that can extract informative motion flow from natural scenes in a manner consistent with human visual processing have yet to be established. Meanwhile, recent advancements in computer vision (CV), propelled by deep learning, have led to significant progress in optical flow estimation, a task closely related to motion perception. Here we propose an image-computable model of human motion perception by bridging the gap between biological and CV models. Specifically, we introduce a novel two-stages approach that combines trainable motion energy sensing with a recurrent self-attention network for adaptive motion integration and segregation. This model architecture aims to capture the computations in V1-MT, the core structure for motion perception in the biological visual system, while providing the ability to derive informative motion flow for a wide range of stimuli, including complex natural scenes. In silico neurophysiology reveals that our model's unit responses are similar to mammalian neural recordings regarding motion pooling and speed tuning. The proposed model can also replicate human responses to a range of stimuli examined in past psychophysical studies. The experimental results on the Sintel benchmark demonstrate that our model predicts human responses better than the ground truth, whereas the state-of-the-art CV models show the opposite. Our study provides a computational architecture consistent with human visual motion processing, although the physiological correspondence may not be exact.

Applications/Neuroscience, Cognitive Science

Rainer Engelken

Spiking Neural Networks (SNNs) are biologically-inspired models that are capable of processing information in streams of action potentials. However, simulating and training SNNs is computationally expensive due to the need to solve large systems of coupled differential equations. In this paper, we propose a novel event-based algorithm called SparseProp for simulating and training sparse SNNs. Our algorithm reduces the computational cost of both forward pass and backward pass operations from O(N) to O(log(N)) per network spike, enabling numerically exact simulations of large spiking networks and their efficient training using backpropagation through time. By exploiting the sparsity of the network, SparseProp avoids iterating through all neurons at every spike and uses efficient state updates. We demonstrate the effectiveness of SparseProp for several classical integrate-and-fire neuron models, including simulating a sparse SNN with one million LIF neurons, which is sped up by more than four orders of magnitude compared to previous implementations. Our work provides an efficient and exact solution for training large-scale spiking neural networks and opens up new possibilities for building more sophisticated brain-inspired models.

Applications/Computer Vision

Elias Nehme, Omer Yair, Tomer Michaeli

Uncertainty quantification is crucial for the deployment of image restoration models in safety-critical domains, like autonomous driving and biological imaging. To date, methods for uncertainty visualization have mainly focused on per-pixel estimates. Yet, a heatmap of per-pixel variances is typically of little practical use, as it does not capture the strong correlations between pixels. A more natural measure of uncertainty corresponds to the variances along the principal components (PCs) of the posterior distribution. Theoretically, the PCs can be computed by applying PCA on samples generated from a conditional generative model for the input image. However, this requires generating a very large number of samples at test time, which is painfully slow with the current state-of-the-art (diffusion) models. In this work, we present a method for predicting the PCs of the posterior distribution for any input image, in a single forward pass of a neural network. Our method can either wrap around a pre-trained model that was trained to minimize the mean square error (MSE), or can be trained from scratch to output both a predicted image and the posterior PCs. We showcase our method on multiple inverse problems in imaging, including denoising, inpainting, super-resolution, and biological image-to-image translation. Our method reliably conveys instance-adaptive uncertainty directions, achieving uncertainty quantification comparable with posterior samplers while being orders of magnitude faster. Code and examples are available on our [webpage](https://eliasnehme.github.io/NPPC/).

Applications/Genetics, Cell Biology, etc

Tianrong Chen, Guan-Horng Liu, Molei Tao, Evangelos Theodorou

It is a crucial challenge to reconstruct population dynamics using unlabeled samples from distributions at coarse time intervals. Recent approaches such as flow-based models or Schrödinger Bridge (SB) models have demonstrated appealing performance, yet the inferred sample trajectories either fail to account for the underlying stochasticity or are unnecessarily rigid. In this article, we extend SB into phase space and propose $\underline{D}$eep $\underline{M}$omentum Multi-Marginal $\underline{S}$chrödinger $\underline{B}$ridge (DMSB), a novel computational framework that learns the smooth measure-valued spline for stochastic systems that satisfy position marginal constraints across time. By tailoring the celebrated Bregman Iteration and extending the Iteration Proportional Fitting to phase space, we manage to handle high-dimensional multi-marginal trajectory inference tasks efficiently. Our algorithm outperforms baselines significantly, as evidenced by experiments for synthetic datasets and a real-world single-cell RNA sequence dataset. Additionally, the proposed approach can reasonably reconstruct the evolution of velocity distribution, from position snapshots only, when there is a ground truth velocity that is nevertheless inaccessible.

Applications/Computer Vision

Zhuofan Ying, Peter Hase, Mohit Bansal

Biological vision systems make adaptive use of context to recognize objects in new settings with novel contexts as well as occluded or blurry objects in familiar settings. In this paper, we investigate how vision models adaptively use context for out-of-distribution (OOD) generalization and leverage our analysis results to improve model OOD generalization. First, we formulate two distinct OOD settings where the contexts are either beneficial Object-Disambiguation or irrelevant Background-Invariance, reflecting the diverse contextual challenges faced in biological vision. We then analyze model performance in these two different OOD settings and demonstrate that models that excel in one setting tend to struggle in the other. Notably, prior works on learning causal features improve on one setting but hurt on the other. This underscores the importance of generalizing across both OOD settings, as this ability is crucial for both human cognition and robust AI systems. Next, to better understand the model properties contributing to OOD generalization, we use representational geometry analysis and our own probing methods to examine a population of models, and we discover that those with more factorized representations and appropriate feature weighting are more successful in handling Object-Disambiguation and Background-Invariance tests. We further validate these findings through causal intervention, manipulating representation factorization and feature weighting to demonstrate their causal effect on performance. Motivated by our analysis results, we propose new augmentation methods aimed at enhancing model generalization. The proposed methods outperform strong baselines, yielding improvements in both in-distribution and OOD tests. We conclude that, in order to replicate the generalization abilities of biological vision, computer vision models must have factorized object vs. background representations and appropriately weigh both kinds of features.

Applications/Language, Speech and Dialog

David Skrill, Samuel Norman-Haignere

Modern language models excel at integrating across long temporal scales needed to encode linguistic meaning and show non-trivial similarities to biological neural systems. Prior work suggests that human brain responses to language exhibit hierarchically organized "integration windows" that substantially constrain the overall influence of an input token (e.g., a word) on the neural response. However, little prior work has attempted to use integration windows to characterize computations in large language models (LLMs). We developed a simple word-swap procedure for estimating integration windows from black-box language models that does not depend on access to gradients or knowledge of the model architecture (e.g., attention weights). Using this method, we show that trained LLMs exhibit stereotyped integration windows that are well-fit by a convex combination of an exponential and a power-law function, with a partial transition from exponential to power-law dynamics across network layers. We then introduce a metric for quantifying the extent to which these integration windows vary with structural boundaries (e.g., sentence boundaries), and using this metric, we show that integration windows become increasingly yoked to structure at later network layers. None of these findings were observed in an untrained model, which as expected integrated uniformly across its input. These results suggest that LLMs learn to integrate information in natural language using a stereotyped pattern: integrating across position-yoked, exponential windows at early layers, followed by structure-yoked, power-law windows at later layers. The methods we describe in this paper provide a general-purpose toolkit for understanding temporal integration in language models, facilitating cross-disciplinary research at the intersection of biological and artificial intelligence.

Deep Learning/Graph Neural Networks

Jung Yeon Park, Lawson Wong, Robin Walters

Data over non-Euclidean manifolds, often discretized as surface meshes, naturally arise in computer graphics and biological and physical systems. In particular, solutions to partial differential equations (PDEs) over manifolds depend critically on the underlying geometry. While graph neural networks have been successfully applied to PDEs, they do not incorporate surface geometry and do not consider local gauge symmetries of the manifold. Alternatively, recent works on gauge equivariant convolutional and attentional architectures on meshes leverage the underlying geometry but underperform in modeling surface PDEs with complex nonlinear dynamics. To address these issues, we introduce a new gauge equivariant architecture using nonlinear message passing. Our novel architecture achieves higher performance than either convolutional or attentional networks on domains with highly complex and nonlinear dynamics. However, similar to the non-mesh case, design trade-offs favor convolutional, attentional, or message passing networks for different tasks; we investigate in which circumstances our message passing method provides the most benefit.

Applications/Chemistry and Drug Discovery

Yangtian Zhang, Zuobai Zhang, Bozitao Zhong, Sanchit Misra, Jian Tang

Proteins play a critical role in carrying out biological functions, and their 3D structures are essential in determining their functions. Accurately predicting the conformation of protein side-chains given their backbones is important for applications in protein structure prediction, design and protein-protein interactions. Traditional methods are computationally intensive and have limited accuracy, while existing machine learning methods treat the problem as a regression task and overlook the restrictions imposed by the constant covalent bond lengths and angles. In this work, we present DiffPack, a torsional diffusion model that learns the joint distribution of side-chain torsional angles, the only degrees of freedom in side-chain packing, by diffusing and denoising on the torsional space. To avoid issues arising from simultaneous perturbation of all four torsional angles, we propose autoregressively generating the four torsional angles from $\chi_1$ to $\chi_4$ and training diffusion models for each torsional angle. We evaluate the method on several benchmarks for protein side-chain packing and show that our method achieves improvements of 11.9% and 13.5% in angle accuracy on CASP13 and CASP14, respectively, with a significantly smaller model size ($60\times$ fewer parameters). Additionally, we show the effectiveness of our method in enhancing side-chain predictions in the AlphaFold2 model. Code is available at https://github.com/DeepGraphLearning/DiffPack.

Applications/Neuroscience, Cognitive Science

Hamza Chaudhry, Jacob Zavatone-Veth, Dmitry Krotov, Cengiz Pehlevan

Sequence memory is an essential attribute of natural and artificial intelligence that enables agents to encode, store, and retrieve complex sequences of stimuli and actions. Computational models of sequence memory have been proposed where recurrent Hopfield-like neural networks are trained with temporally asymmetric Hebbian rules. However, these networks suffer from limited sequence capacity (maximal length of the stored sequence) due to interference between the memories. Inspired by recent work on Dense Associative Memories, we expand the sequence capacity of these models by introducing a nonlinear interaction term, enhancing separation between the patterns. We derive novel scaling laws for sequence capacity with respect to network size, significantly outperforming existing scaling laws for models based on traditional Hopfield networks, and verify these theoretical results with numerical simulation. Moreover, we introduce a generalized pseudoinverse rule to recall sequences of highly correlated patterns. Finally, we extend this model to store sequences with variable timing between states' transitions and describe a biologically-plausible implementation, with connections to motor neuroscience.

Applications/Neuroscience, Cognitive Science

Pingsheng Li, Jonathan Cornford, Arna Ghosh, Blake Richards

Most recurrent neural networks (RNNs) do not include a fundamental constraint of real neural circuits: Dale's Law, which implies that neurons must be excitatory (E) or inhibitory (I). Dale's Law is generally absent from RNNs because simply partitioning a standard network's units into E and I populations impairs learning. However, here we extend a recent feedforward bio-inspired EI network architecture, named Dale's ANNs, to recurrent networks, and demonstrate that good performance is possible while respecting Dale's Law. This begs the question: What makes some forms of EI network learn poorly and others learn well? And, why does the simple approach of incorporating Dale's Law impair learning? Historically the answer was thought to be the sign constraints on EI network parameters, and this was a motivation behind Dale's ANNs. However, here we show the spectral properties of the recurrent weight matrix at initialisation are more impactful on network performance than sign constraints. We find that simple EI partitioning results in a singular value distribution that is multimodal and dispersed, whereas standard RNNs have an unimodal, more clustered singular value distribution, as do recurrent Dale's ANNs. We also show that the spectral properties and performance of partitioned EI networks are worse for small networks with fewer I units, and we present normalised SVD entropy as a measure of spectrum pathology that correlates with performance. Overall, this work sheds light on a long-standing mystery in neuroscience-inspired AI and computational neuroscience, paving the way for greater alignment between neural networks and biology.

Deep Learning/Generative Models and Autoencoders

Hui Yuan, Kaixuan Huang, Chengzhuo Ni, Minshuo Chen, Mengdi Wang

We explore the methodology and theory of reward-directed generation via conditional diffusion models. Directed generation aims to generate samples with desired properties as measured by a reward function, which has broad applications in generative AI, reinforcement learning, and computational biology. We consider the common learning scenario where the dataset consists of majorly unlabeled data and a small set of data with noisy reward labels. Our approach leverages a learned reward function on the smaller data set as a pseudolabeler to label the unlabelled data. After pseudo-labelling, a conditional diffusion model (CDM) is trained on the data and samples are generated by setting a target value $a$ as the condition in CDM. From a theoretical standpoint, we show that this directed generator can effectively learn and sample from the reward-conditioned data distribution: 1. our model is capable of recovering the data's latent subspace representation. 2. the model generates samples moving closer to the user-specified target. The improvement in rewards of samples is influenced by a interplay between the strength of the reward signal, the distribution shift, and the cost of off-support extrapolation. We provide empirical results to validate our theory and highlight the relationship between the strength of extrapolation and the quality of generated samples.

Deep Learning/Generative Models and Autoencoders

Shaokai Ye, Jessy Lauer, Mu Zhou, Alexander Mathis, Mackenzie Mathis

The process of quantifying and analyzing animal behavior involves translating the naturally occurring descriptive language of their actions into machine-readable code. Yet, codifying behavior analysis is often challenging without deep understanding of animal behavior and technical machine learning knowledge. To limit this gap, we introduce AmadeusGPT: a natural language interface that turns natural language descriptions of behaviors into machine-executable code. Large-language models (LLMs) such as GPT3.5 and GPT4 allow for interactive language-based queries that are potentially well suited for making interactive behavior analysis. However, the comprehension capability of these LLMs is limited by the context window size, which prevents it from remembering distant conversations. To overcome the context window limitation, we implement a novel dual-memory mechanism to allow communication between short-term and long-term memory using symbols as context pointers for retrieval and saving. Concretely, users directly use language-based definitions of behavior and our augmented GPT develops code based on the core AmadeusGPT API, which contains machine learning, computer vision, spatio-temporal reasoning, and visualization modules. Users then can interactively refine results, and seamlessly add new behavioral modules as needed. We used the MABe 2022 behavior challenge tasks to benchmark AmadeusGPT and show excellent performance. Note, an end-user would not need to write any code to achieve this. Thus, collectively AmadeusGPT presents a novel way to merge deep biological knowledge, large-language models, and core computer vision modules into a more naturally intelligent system. Code and demos can be found at: https://github.com/AdaptiveMotorControlLab/AmadeusGPT

Social Aspects/Fairness, Equity, Justice and Safety

Beepul Bharti, Paul Yi, Jeremias Sulam

As the use of machine learning models in real world high-stakes decision settings continues to grow, it is highly important that we are able to audit and control for any potential fairness violations these models may exhibit towards certain groups. To do so, one naturally requires access to sensitive attributes, such as demographics, biological sex, or other potentially sensitive features that determine group membership. Unfortunately, in many settings, this information is often unavailable. In this work we study the well known equalized odds (EOD) definition of fairness. In a setting without sensitive attributes, we first provide tight and computable upper bounds for the EOD violation of a predictor. These bounds precisely reflect the worst possible EOD violation. Second, we demonstrate how one can provably control the worst-case EOD by a new post-processing correction method. Our results characterize when directly controlling for EOD with respect to the predicted sensitive attributes is -- and when is not -- optimal when it comes to controlling worst-case EOD. Our results hold under assumptions that are milder than previous works, and we illustrate these results with experiments on synthetic and real datasets.

Applications/Neuroscience, Cognitive Science

Mufeng Tang, Helen Barron, Rafal Bogacz

Forming accurate memory of sequential stimuli is a fundamental function of biological agents. However, the computational mechanism underlying sequential memory in the brain remains unclear. Inspired by neuroscience theories and recent successes in applying predictive coding (PC) to \emph{static} memory tasks, in this work we propose a novel PC-based model for \emph{sequential} memory, called \emph{temporal predictive coding} (tPC). We show that our tPC models can memorize and retrieve sequential inputs accurately with a biologically plausible neural implementation. Importantly, our analytical study reveals that tPC can be viewed as a classical Asymmetric Hopfield Network (AHN) with an implicit statistical whitening process, which leads to more stable performance in sequential memory tasks of structured inputs. Moreover, we find that tPC exhibits properties consistent with behavioral observations and theories in neuroscience, thereby strengthening its biological relevance. Our work establishes a possible computational mechanism underlying sequential memory in the brain that can also be theoretically interpreted using existing memory model frameworks.

Applications/Neuroscience, Cognitive Science

Tahereh Toosi, Elias Issa

In natural vision, feedback connections support versatile visual inference capabilities such as making sense of the occluded or noisy bottom-up sensory information or mediating pure top-down processes such as imagination. However, the mechanisms by which the feedback pathway learns to give rise to these capabilities flexibly are not clear. We propose that top-down effects emerge through alignment between feedforward and feedback pathways, each optimizing its own objectives. To achieve this co-optimization, we introduce Feedback-Feedforward Alignment (FFA), a learning algorithm that leverages feedback and feedforward pathways as mutual credit assignment computational graphs, enabling alignment. In our study, we demonstrate the effectiveness of FFA in co-optimizing classification and reconstruction tasks on widely used MNIST and CIFAR10 datasets. Notably, the alignment mechanism in FFA endows feedback connections with emergent visual inference functions, including denoising, resolving occlusions, hallucination, and imagination. Moreover, FFA offers bio-plausibility compared to traditional backpropagation (BP) methods in implementation. By repurposing the computational graph of credit assignment into a goal-driven feedback pathway, FFA alleviates weight transport problems encountered in BP, enhancing the bio-plausibility of the learning algorithm. Our study presents FFA as a promising proof-of-concept for the mechanisms underlying how feedback connections in the visual cortex support flexible visual functions. This work also contributes to the broader field of visual inference underlying perceptual phenomena and has implications for developing more biologically inspired learning algorithms.

Applications/Neuroscience, Cognitive Science

Wayne Soo, Vishwa Goudar, Xiao-Jing Wang

Training recurrent neural networks (RNNs) has become a go-to approach for generating and evaluating mechanistic neural hypotheses for cognition. The ease and efficiency of training RNNs with backpropagation through time and the availability of robustly supported deep learning libraries has made RNN modeling more approachable and accessible to neuroscience. Yet, a major technical hindrance remains. Cognitive processes such as working memory and decision making involve neural population dynamics over a long period of time within a behavioral trial and across trials. It is difficult to train RNNs to accomplish tasks where neural representations and dynamics have long temporal dependencies without gating mechanisms such as LSTMs or GRUs which currently lack experimental support and prohibit direct comparison between RNNs and biological neural circuits. We tackled this problem based on the idea of specialized skip-connections through time to support the emergence of task-relevant dynamics, and subsequently reinstitute biological plausibility by reverting to the original architecture. We show that this approach enables RNNs to successfully learn cognitive tasks that prove impractical if not impossible to learn using conventional methods. Over numerous tasks considered here, we achieve less training steps and shorter wall-clock times, particularly in tasks that require learning long-term dependencies via temporal integration over long timescales or maintaining a memory of past events in hidden-states. Our methods expand the range of experimental tasks that biologically plausible RNN models can learn, thereby supporting the development of theory for the emergent neural mechanisms of computations involving long-term dependencies.