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Applications · Neuroscience, Cognitive Science

Hyuna Cho, Jaeyoon Sim, Guorong Wu, Won Hwa Kim

Analysis of neurodegenerative diseases on brain connectomes is important in facilitating early diagnosis and predicting its onset. However, investigation of the progressive and irreversible dynamics of these diseases remains underexplored in cross-sectional studies as its diagnostic groups are considered independent. Also, as in many real-world graphs, brain networks exhibit intricate structures with both homophily and heterophily. To address these challenges, we propose Adaptive Graph diffusion network with Temporal regularization (AGT). AGT introduces node-wise convolution to adaptively capture low (i.e., homophily) and high-frequency (i.e., heterophily) characteristics within an optimally tailored range for each node. Moreover, AGT captures sequential variations within progressive diagnostic groups with a novel temporal regularization, considering the relative feature distance between the groups in the latent space. As a result, our proposed model yields interpretable results at both node-level and group-level. The superiority of our method is validated on two neurodegenerative disease benchmarks for graph classification: Alzheimer’s Disease Neuroimaging Initiative (ADNI) and Parkinson’s Progression Markers Initiative (PPMI) datasets.

Applications · Neuroscience, Cognitive Science

Xiaolong Zou, Xingxing Cao, Xiaojiao Yang, Bo Hong

Increasing experimental evidence suggests that the human hippocampus, evolutionarily shaped by spatial navigation tasks, also plays an important role in language comprehension, indicating a shared computational mechanism for both functions. However, the specific relationship between the hippocampal formation's computational mechanism in spatial navigation and its role in language processing remains elusive. To investigate this question, we develop a prefrontal-hippocampal-entorhinal model (which called PHE-trinity) that features two key aspects: 1) the use of a modular continuous attractor neural network to represent syntactic structure, akin to the grid network in the entorhinal cortex; 2) the creation of two separate input streams, mirroring the factorized structure-content representation found in the hippocampal formation. We evaluate our model on language command parsing tasks, specifically using the SCAN dataset. Our findings include: 1) attractor dynamics can facilitate systematic generalization and efficient learning from limited data; 2) through visualization and reverse engineering, we unravel a potential dynamic mechanism for grid network representing syntactic structure. Our research takes an initial step in uncovering the dynamic mechanism shared by spatial navigation and language information processing.

Applications · Neuroscience, Cognitive Science

Michelle Pan, Mariah Schrum, Vivek Myers, Erdem Biyik, Anca Dragan

Adaptive brain stimulation can treat neurological conditions such as Parkinson’s disease and post-stroke motor deficits by influencing abnormal neural activity. Because of patient heterogeneity, each patient requires a unique stimulation policy to achieve optimal neural responses. Model-free reinforcement learning (MFRL) holds promise in learning effective policies for a variety of similar control tasks, but is limited in domains like brain stimulation by a need for numerous costly environment interactions. In this work we introduce Coprocessor Actor Critic, a novel, model-based reinforcement learning (MBRL) approach for learning neural coprocessor policies for brain stimulation. Our key insight is that coprocessor policy learning is a combination of learning how to act optimally in the world and learning how to induce optimal actions in the world through stimulation of an injured brain. We show that our approach overcomes the limitations of traditional MFRL methods in terms of sample efficiency and task success and outperforms baseline MBRL approaches in a neurologically realistic model of an injured brain.

Applications · Neuroscience, Cognitive Science

Akshay Kumar Jagadish, Julian Coda-Forno, Mirko Thalmann, Eric Schulz, Marcel Binz

Ecological rationality refers to the notion that humans are rational agents adapted to their environment. However, testing this theory remains challenging due to two reasons: the difficulty in defining what tasks are ecologically valid and building rational models for these tasks. In this work, we demonstrate that large language models can generate cognitive tasks, specifically category learning tasks, that match the statistics of real-world tasks, thereby addressing the first challenge. We tackle the second challenge by deriving rational agents adapted to these tasks using the framework of meta-learning, leading to a class of models called *ecologically rational meta-learned inference* (ERMI). ERMI quantitatively explains human data better than seven other cognitive models in two different experiments. It additionally matches human behavior on a qualitative level: (1) it finds the same tasks difficult that humans find difficult, (2) it becomes more reliant on an exemplar-based strategy for assigning categories with learning, and (3) it generalizes to unseen stimuli in a human-like way. Furthermore, we show that ERMI's ecologically valid priors allow it to achieve state-of-the-art performance on the OpenML-CC18 classification benchmark.

Applications · Neuroscience, Cognitive Science

Paul Scotti, Mihir Tripathy, Cesar Kadir Torrico Villanueva, Reese Kneeland, Tong Chen, Ashutosh Narang, Charan Santhirasegaran, Jonathan Xu, Thomas Naselaris, Kenneth Norman 等

Reconstructions of visual perception from brain activity have improved tremendously, but the practical utility of such methods has been limited. This is because such models are trained independently per subject where each subject requires dozens of hours of expensive fMRI training data to attain high-quality results. The present work showcases high-quality reconstructions using only 1 hour of fMRI training data. We pretrain our model across 7 subjects and then fine-tune on minimal data from a new subject. Our novel functional alignment procedure linearly maps all brain data to a shared-subject latent space, followed by a shared non-linear mapping to CLIP image space. We then map from CLIP space to pixel space by fine-tuning Stable Diffusion XL to accept CLIP latents as inputs instead of text. This approach improves out-of-subject generalization with limited training data and also attains state-of-the-art image retrieval and reconstruction metrics compared to single-subject approaches. MindEye2 demonstrates how accurate reconstructions of perception are possible from a single visit to the MRI facility. All code is available on Github: https://github.com/MedARC-AI/MindEyeV2

Applications · Neuroscience, Cognitive Science

Umais Zahid, Qinghai Guo, Zafeirios Fountas

We present Langevin Predictive Coding (LPC), a novel algorithm for deep generative model learning that builds upon the predictive coding framework of computational neuroscience. By injecting Gaussian noise into the predictive coding inference procedure and incorporating an encoder network initialization, we reframe the approach as an amortized Langevin sampling method for optimizing a tight variational lower bound. To increase robustness to sampling step size, we present a lightweight preconditioning technique inspired by Riemannian Langevin methods and adaptive SGD. We compare LPC against VAEs by training generative models on benchmark datasets; our experiments demonstrate superior sample quality and faster convergence for LPC in a fraction of SGD training iterations, while matching or exceeding VAE performance across key metrics like FID, diversity and coverage.

Applications · Neuroscience, Cognitive Science

Noga Mudrik, Yenho Chen, Eva Yezerets, Christopher Rozell, Adam Charles

Learning interpretable representations of neural dynamics at a population level is a crucial first step to understanding how observed neural activity relates to perception and behavior. Models of neural dynamics often focus on either low-dimensional projections of neural activity or on learning dynamical systems that explicitly relate to the neural state over time. We discuss how these two approaches are interrelated by considering dynamical systems as representative of flows on a low-dimensional manifold. Building on this concept, we propose a new decomposed dynamical system model that represents complex non-stationary and nonlinear dynamics of time series data as a sparse combination of simpler, more interpretable components. Our model is trained through a dictionary learning procedure, where we leverage recent results in tracking sparse vectors over time. The decomposed nature of the dynamics is more expressive than previous switched approaches for a given number of parameters and enables modeling of overlapping and non-stationary dynamics. In both continuous-time and discrete-time instructional examples, we demonstrate that our model effectively approximates the original system, learns efficient representations, and captures smooth transitions between dynamical modes. Furthermore, we highlight our model’s ability to efficiently capture and demix population dynamics generated from multiple independent subnetworks, a task that is computationally impractical for switched models. Finally, we apply our model to neural ``full brain'' recordings of C. elegans data, illustrating a diversity of dynamics that is obscured when classified into discrete states.

Applications · Neuroscience, Cognitive Science

Ce Ju, Reinmar Kobler, Liyao Tang, Cuntai Guan, Motoaki Kawanabe

In human neuroimaging, multi-modal imaging techniques are frequently combined to enhance our comprehension of whole-brain dynamics and improve diagnosis in clinical practice. Modalities like electroencephalography and functional magnetic resonance imaging provide distinct views to the brain dynamics due to diametral spatiotemporal sensitivities and underlying neurophysiological coupling mechanisms. These distinct views pose a considerable challenge to learning a shared representation space, especially when dealing with covariance-based data characterized by their geometric structure. To capitalize on the geometric structure, we introduce a measure called geodesic correlation which expands traditional correlation consistency to covariance-based data on the symmetric positive definite (SPD) manifold. This measure is derived from classical canonical correlation analysis and serves to evaluate the consistency of latent representations obtained from paired views. For multi-view, self-supervised learning where one or both latent views are SPD we propose an innovative geometric deep learning framework termed DeepGeoCCA. Its primary objective is to enhance the geodesic correlation of unlabeled, paired data, thereby generating novel representations while retaining the geometric structures. In simulations and experiments with multi-view and multi-modal human neuroimaging data, we find that DeepGeoCCA learns latent representations with high geodesic correlation for unseen data while retaining relevant information for downstream tasks.

Applications · Neuroscience, Cognitive Science

Ilyass Hammouamri, Ismail Khalfaoui Hassani, Timothée Masquelier

Spiking Neural Networks (SNNs) are a promising research direction for building power-efficient information processing systems, especially for temporal tasks such as speech recognition. In SNNs, delays refer to the time needed for one spike to travel from one neuron to another. These delays matter because they influence the spike arrival times, and it is well-known that spiking neurons respond more strongly to coincident input spikes. More formally, it has been shown theoretically that plastic delays greatly increase the expressivity in SNNs. Yet, efficient algorithms to learn these delays have been lacking. Here, we propose a new discrete-time algorithm that addresses this issue in deep feedforward SNNs using backpropagation, in an offline manner. To simulate delays between consecutive layers, we use 1D convolutions across time. The kernels contain only a few non-zero weights – one per synapse – whose positions correspond to the delays. These positions are learned together with the weights using the recently proposed Dilated Convolution with Learnable Spacings (DCLS). We evaluated our method on three datasets: the Spiking Heidelberg Dataset (SHD), the Spiking Speech Commands (SSC) and its non spiking version Google Speech Commands v0.02 (GSC) benchmarks, which require detecting temporal patterns. We used feedforward SNNs with two or three hidden fully connected layers, and vanilla leaky integrate-and-fire neurons. We showed that fixed random delays help and that learning them helps even more. Furthermore, our method outperformed the state-of-the-art in the three datasets without using recurrent connections and with substantially fewer parameters. Our work demonstrates the potential of delay learning in developing accurate and precise models for temporal data processing. Our code is based on PyTorch / SpikingJelly and available at: https://github.com/Thvnvtos/SNN-delays

Applications · Neuroscience, Cognitive Science

Hanqi Zhou, Robert Bamler, Charley Wu, Álvaro Tejero-Cantero

Intelligent tutoring systems optimize the selection and timing of learning materials to enhance understanding and long-term retention. This requires estimates of both the learner's progress ("knowledge tracing"; KT), and the prerequisite structure of the learning domain ("knowledge mapping"). While recent deep learning models achieve high KT accuracy, they do so at the expense of the interpretability of psychologically-inspired models. In this work, we present a solution to this trade-off. PSI-KT is a hierarchical generative approach that explicitly models how both individual cognitive traits and the prerequisite structure of knowledge influence learning dynamics, thus achieving interpretability by design. Moreover, by using scalable Bayesian inference, PSI-KT targets the real-world need for efficient personalization even with a growing body of learners and interaction data. Evaluated on three datasets from online learning platforms, PSI-KT achieves superior multi-step **p**redictive accuracy and **s**calable inference in continual-learning settings, all while providing **i**nterpretable representations of learner-specific traits and the prerequisite structure of knowledge that causally supports learning. In sum, predictive, scalable and interpretable knowledge tracing with solid knowledge mapping lays a key foundation for effective personalized learning to make education accessible to a broad, global audience.

Applications · Neuroscience, Cognitive Science

Marcel Binz, Eric Schulz

Large language models are powerful systems that excel at many tasks, ranging from translation to mathematical reasoning. Yet, at the same time, these models often show unhuman-like characteristics. In the present paper, we address this gap and ask whether large language models can be turned into cognitive models. We find that -- after finetuning them on data from psychological experiments -- these models offer accurate representations of human behavior, even outperforming traditional cognitive models in two decision-making domains. In addition, we show that their representations contain the information necessary to model behavior on the level of individual subjects. Finally, we demonstrate that finetuning on multiple tasks enables large language models to predict human behavior in a previously unseen task. Taken together, these results suggest that large, pre-trained models can be adapted to become models of human cognition, which opens up future research directions toward building more general cognitive models.

Applications · Neuroscience, Cognitive Science

Jonathan Vacher, Pascal Mamassian

Perception is often viewed as a process that transforms physical variables, external to an observer, into internal psychological variables. Such a process can be modeled by a function coined *perceptual scale*. The *perceptual scale* can be deduced from psychophysical measurements that consist in comparing the relative differences between stimuli (i.e. difference scaling experiments). However, this approach is often overlooked by the modeling and experimentation communities. Here, we demonstrate the value of measuring the *perceptual scale* of classical (spatial frequency, orientation) and less classical physical variables (interpolation between textures) by embedding it in recent probabilistic modeling of perception. First, we show that the assumption that an observer has an internal representation of univariate parameters such as spatial frequency or orientation while stimuli are high-dimensional does not lead to contradictory predictions when following the theoretical framework. Second, we show that the measured *perceptual scale* corresponds to the transduction function hypothesized in this framework. In particular, we demonstrate that it is related to the Fisher information of the generative model that underlies perception and we test the predictions given by the generative model of different stimuli in a set a of difference scaling experiments. Our main conclusion is that the *perceptual scale* is mostly driven by the stimulus power spectrum. Finally, we propose that this measure of *perceptual scale* is a way to push further the notion of perceptual distances by estimating the perceptual geometry of images i.e. the path between images instead of simply the distance between those.

Applications · Neuroscience, Cognitive Science

Andrew Luo, Maggie Henderson, Michael Tarr, Leila Wehbe

Understanding the functional organization of higher visual cortex is a central focus in neuroscience. Past studies have primarily mapped the visual and semantic selectivity of neural populations using hand-selected stimuli, which may potentially bias results towards pre-existing hypotheses of visual cortex functionality. Moving beyond conventional approaches, we introduce a data-driven method that generates natural language descriptions for images predicted to maximally activate individual voxels of interest. Our method -- Semantic Captioning Using Brain Alignments ("BrainSCUBA") -- builds upon the rich embedding space learned by a contrastive vision-language model and utilizes a pre-trained large language model to generate interpretable captions. We validate our method through fine-grained voxel-level captioning across higher-order visual regions. We further perform text-conditioned image synthesis with the captions, and show that our images are semantically coherent and yield high predicted activations. Finally, to demonstrate how our method enables scientific discovery, we perform exploratory investigations on the distribution of "person" representations in the brain, and discover fine-grained semantic selectivity in body-selective areas. Unlike earlier studies that decode text, our method derives *voxel-wise captions of semantic selectivity*. Our results show that BrainSCUBA is a promising means for understanding functional preferences in the brain, and provides motivation for further hypothesis-driven investigation of visual cortex.

Applications · Neuroscience, Cognitive Science

Haruo Hosoya

Motivated by a recent neuroscientific hypothesis, some theoretical studies have accounted for neural cognitive maps in the rodent hippocampal formation as a representation of the general relational structure across task environments. However, despite their remarkable results, it is unclear whether their account can be extended to more general settings beyond spatial random-walk tasks in 2D environments. To address this question, we construct a novel cognitive model that performs memory-based relational decision-making tasks, inspired by previous human studies, for learning abstract structures in non-spatial relations. Building on previous approaches of modular architecture, we develop a learning algorithm that performs reward-guided search for representation of abstract relations, while dynamically maintaining their binding to concrete entities using our specific memory mechanism enabling content replacement. Our experiments show (i) the capability of our model to capture relational structures that can generalize over new domains with unseen entities, (ii) the difficulty of our task that leads previous models, including Neural Turing Machine and vanilla Transformer, to complete failure, and (iii) the similarity of performance and internal representations of our model to recent human behavioral and fMRI experimental data in the human hippocampal formation.

Applications · Neuroscience, Cognitive Science

Thomas Soares Mullen, Marine Schimel, Guillaume Hennequin, Christian Machens, Michael B. Orger, Adrien Jouary

A central objective in neuroscience is to understand how the brain orchestrates movement. Recent advances in automated tracking technologies have made it possible to document behavior with unprecedented temporal resolution and scale, generating rich datasets which can be exploited to gain insights into the neural control of movement. One common approach is to identify stereotypical motor primitives using cluster analysis. However, this categorical description can limit our ability to model the effect of more continuous control schemes. Here we take a control theoretic approach to behavioral modeling and argue that movements can be understood as the output of a controlled dynamical system. Previously, models of movement dynamics, trained solely on behavioral data, have been effective in reproducing observed features of neural activity. These models addressed specific scenarios where animals were trained to execute particular movements upon receiving a prompt. In this study, we extend this approach to analyze the full natural locomotor repertoire of an animal: the zebrafish larva. Our findings demonstrate that this repertoire can be effectively generated through a sparse control signal driving a latent Recurrent Neural Network (RNN). Our model's learned latent space preserves key kinematic features and disentangles different categories of movements. To further interpret the latent dynamics, we used balanced model reduction to yield a simplified model. Collectively, our methods serve as a case study for interpretable system identification, and offer a novel framework for understanding neural activity in relation to movement.

Applications · Neuroscience, Cognitive Science

Luciano Dyballa, Samuel Lang, Alexandra Haslund-Gourley, Eviatar Yemini, Steven Zucker

The static synaptic connectivity of neuronal circuits stands in direct contrast to the dynamics of their function. As in changing community interactions, different neurons can participate actively in various combinations to effect behaviors at different times. We introduce an unsupervised approach to learn the dynamic affinities between neurons in live, behaving animals, and to reveal which communities form among neurons at different times. The inference occurs in two major steps. First, pairwise non-linear affinities between neuronal traces from brain-wide calcium activity are organized by non-negative tensor factorization (NTF). Each factor specifies which groups of neurons are most likely interacting for an inferred interval in time, and for which animals. Finally, a generative model that allows for weighted community detection is applied to the functional motifs produced by NTF to reveal a dynamic functional connectome. Since time codes the different experimental variables (e.g., application of chemical stimuli), this provides an atlas of neural motifs active during separate stages of an experiment (e.g., stimulus application or spontaneous behaviors). Results from our analysis are experimentally validated, confirming that our method is able to robustly predict causal interactions between neurons to generate behavior.

Applications · Neuroscience, Cognitive Science

Yilong Xu, Yang Liu, Hao Sun

In nature, the behavior of many complex systems can be described by parsimonious math equations. Symbolic Regression (SR) is defined as the task of automatically distilling equations from limited data. Keen efforts have been placed on tackling this issue and demonstrated success in SR. However, there still exist bottlenecks that current methods struggle to break, when the expressions we need to explore tend toward infinity and especially when the underlying math formula is intricate. To this end, we propose a novel Reinforcement Symbolic Regression Machine (RSRM) that masters the capability of uncovering complex math equations from only scarce data. The RSRM model is composed of three key modules: (1) a Monte Carlo tree search (MCTS) agent, designed for exploration, that explores optimal math expression trees consisting of pre-defined math operators and variables, (2) a Double Q-learning block, designed for exploitation, that helps reduce the feasible search space of MCTS via properly understanding the distribution of reward, and (3) a modulated sub-tree discovery block that heuristically learns and defines new math operators to improve representation ability of math expression trees. Binding of these modules yields the SOTA performance of RSRM in SR as demonstrated by multiple benchmark datasets. The RSRM shows clear superiority over several representative baseline models.

Applications · Neuroscience, Cognitive Science

Nanda H Krishna, Colin Bredenberg, Daniel Levenstein, Blake A Richards, Guillaume Lajoie

During periods of quiescence, such as sleep, neural activity in many brain circuits resembles that observed during periods of task engagement. However, the precise conditions under which task-optimized networks can autonomously reactivate the same network states responsible for online behavior is poorly understood. In this study, we develop a mathematical framework that outlines sufficient conditions for the emergence of neural reactivation in circuits that encode features of smoothly varying stimuli. We demonstrate mathematically that noisy recurrent networks optimized to track environmental state variables using change-based sensory information naturally develop denoising dynamics, which, in the absence of input, cause the network to revisit state configurations observed during periods of online activity. We validate our findings using numerical experiments on two canonical neuroscience tasks: spatial position estimation based on self-motion cues, and head direction estimation based on angular velocity cues. Overall, our work provides theoretical support for modeling offline reactivation as an emergent consequence of task optimization in noisy neural circuits.

Applications · Neuroscience, Cognitive Science

Benjamin Lyo, Cristina Savin

Despite many successful examples in which probabilistic inference can account for perception, we have little understanding of how the brain represents and uses structured priors that capture the complexity of natural input statistics. Here we construct a recurrent circuit model that can implicitly represent priors over latent variables, and combine them with sensory and contextual sources of information to encode task-specific posteriors. Inspired by the recent success of diffusion models as means of learning and using priors over images, our model uses dendritic nonlinearities optimized for denoising, and stochastic somatic integration with the degree of noise modulated by an oscillating global signal. Combining these elements into a recurrent network yields a stochastic dynamical system that samples from the prior at a rate prescribed by the period of the global oscillator. Additional inputs reflecting sensory or top-down contextual information alter these dynamics to generate samples from the corresponding posterior, with different input gating patterns selecting different inference tasks. We demonstrate that this architecture can sample from low dimensional nonlinear manifolds and multimodal posteriors. Overall, the model provides a new framework for circuit-level representation of probabilistic information, in a format that facilitates flexible inference.

Applications · Neuroscience, Cognitive Science

Haiyan Jiang, Vincent Zoonekynd, Giulia De Masi, Bin Gu, Huan Xiong

Spiking Neural Networks (SNNs) are attracting growing interest for their energy-efficient computing when implemented on neuromorphic hardware. However, directly training SNNs, even adopting batch normalization (BN), is highly challenging due to their non-differentiable activation function and the temporally delayed accumulation of outputs over time. For SNN training, this temporal accumulation gives rise to Temporal Covariate Shifts (TCS) along the temporal dimension, a phenomenon that would become increasingly pronounced with layer-wise computations across multiple layers and multiple time-steps. In this paper, we introduce TAB (Temporal Accumulated Batch Normalization), a novel SNN batch normalization method that addresses the temporal covariate shift issue by aligning with neuron dynamics (specifically the accumulated membrane potential) and utilizing temporal accumulated statistics for data normalization. Within its framework, TAB effectively encapsulates the historical temporal dependencies that underlie the membrane potential accumulation process, thereby establishing a natural connection between neuron dynamics and TAB batch normalization. Experimental results on CIFAR-10, CIFAR-100, and DVS-CIFAR10 show that our TAB method outperforms other state-of-the-art methods.