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Deep Learning · Self-Supervised Learning

Junyi An, Chao Qu, Yun-Fei Shi, XinHao Liu, Qianwei Tang, Fenglei Cao, Yuan Qi

Graph neural networks (GNNs) have shown considerable promise in computational chemistry. However, the limited availability of molecular data raises concerns regarding GNNs' ability to effectively capture the fundamental principles of physics and chemistry, which constrains their generalization capabilities. To address this challenge, we introduce a novel self-supervised approach termed Equivariant Masked Position Prediction (EMPP), grounded in intramolecular potential and force theory. Unlike conventional attribute masking techniques, EMPP formulates a nuanced position prediction task that is more well-defined and enhances the learning of quantum mechanical features. EMPP also bypasses the approximation of the Gaussian mixture distribution commonly used in denoising methods, allowing for more accurate acquisition of physical properties. Experimental results indicate that EMPP significantly enhances performance of advanced molecular architectures, surpassing state-of-the-art self-supervised approaches. Our code is released in https://github.com/ajy112/EMPP.

Social Aspects · Fairness, Equity, Justice and Safety

Mengxuan Hu, Zihan Guan, Yi Zeng, Junfeng Guo, Zhongliang Zhou, Jielu Zhang, Ruoxi Jia, Anil Vullikanti, Sheng Li

Anti-backdoor learning, aiming to train clean models directly from poisoned datasets, serves as an important defense method for backdoor attack. However, existing methods usually fail to recover backdoored samples to their original, correct labels and suffer from poor generalization to large pre-trained models due to its non end-to end training, making them unsuitable for protecting the increasingly prevalent large pre-trained models. To bridge the gap, we first revisit the anti-backdoor learning problem from a causal perspective. Our theoretical causal analysis reveals that incorporating \emph{\textbf{both}} images and the associated attack indicators preserves the model's integrity. Building on the theoretical analysis, we introduce an end-to-end method, Mind Control through Causal Inference (MCCI), to train clean models directly from poisoned datasets. This approach leverages both the image and the attack indicator to train the model. Based on this training paradigm, the model’s perception of whether an input is clean or backdoored can be controlled. Typically, by introducing fake non-attack indicators, the model perceives all inputs as clean and makes correct predictions, even for poisoned samples. Extensive experiments demonstrate that our method achieves state-of-the-art performance, efficiently recovering the original correct predictions for poisoned samples and enhancing accuracy on clean samples.

Reinforcement Learning · Deep RL

Giseung Park, Youngchul Sung

In this paper, we introduce a simple yet effective reward dimension reduction method to tackle the scalability challenges of multi-objective reinforcement learning algorithms. While most existing approaches focus on optimizing two to four objectives, their abilities to scale to environments with more objectives remain uncertain. Our method uses a dimension reduction approach to enhance learning efficiency and policy performance in multi-objective settings. While most traditional dimension reduction methods are designed for static datasets, our approach is tailored for online learning and preserves Pareto-optimality after transformation. We propose a new training and evaluation framework for reward dimension reduction in multi-objective reinforcement learning and demonstrate the superiority of our method in environments including one with sixteen objectives, significantly outperforming existing online dimension reduction methods.

Social Aspects · Fairness, Equity, Justice and Safety

Zihan Guan, Junfeng Guo, Mengxuan Hu, Sheng Li, Zhongliang Zhou, Jielu Zhang

Deep Neural Networks (DNNs) are known to be vulnerable to backdoor attacks, where attackers can inject hidden backdoors during the training stage. This poses a serious threat to the Model-as-a-Service setting, where downstream users directly utilize third-party models (e.g., HuggingFace Hub, ChatGPT). To this end, we study the inference-stage black-box backdoor detection problem in the paper, where defenders aim to build a firewall to filter out the backdoor inputs in the inference stage, with only input samples and prediction labels available. Existing investigations on this problem either rely on strong assumptions on types of triggers and attacks or suffer from poor efficiency. To build a more generalized and efficient method, we first provide a novel causality-based lens to analyze heterogeneous prediction behaviors for clean and backdoored samples in the inference stage, considering both sample-specific and sample-agnostic backdoor attacks. Motivated by the causal analysis and do-calculus in causal inference, we introduce Black-box Backdoor detection under the Causality Lens (BBCaL) which distinguishes backdoor and clean samples by analyzing prediction consistency after progressively constructing counterfactual samples. Theoretical analysis also sheds light on the effectiveness of the BBCaL. Extensive experiments on three benchmark datasets validate the effectiveness and efficiency of our method.

Deep Learning · Large Language Models

Ziyi Yang, Fanqi Wan, Longguang Zhong, Tianyuan Shi, Xiaojun Quan

While fusing heterogeneous open-source LLMs with varying architectures and sizes can potentially integrate the strengths of different models, existing fusion methods face significant challenges, such as vocabulary alignment and merging distribution matrices. These procedures are not only complex but also prone to introducing noise and errors. In this paper, we propose an implicit fusion method, Weighted-Reward Preference Optimization (WRPO), which leverages preference optimization between the source LLMs and the target LLM to transfer their capabilities effectively. WRPO eliminates the need for vocabulary alignment and matrix fusion and can be efficiently scaled to accommodate various LLMs. To address distributional deviations between the source and target LLMs, WRPO introduces a progressive adaptation strategy that gradually shifts reliance on preferred examples from the target LLM to the source LLMs. Extensive experiments on the MT-Bench, AlpacaEval-2, and Arena-Hard benchmarks demonstrate that WRPO consistently outperforms existing knowledge fusion methods and various fine-tuning baselines. When applied to LLaMA3-8B-Instruct as the target model, WRPO achieves a length-controlled win rate of 55.9\% against GPT-4-Preview-1106 on AlpacaEval-2 and a win rate of 46.2\% against GPT-4-0314 on Arena-Hard. Our code is available at https://github.com/SLIT-AI/WRPO.

Applications · Computer Vision

Rachel Mikulinsky, Morris Alper, Shai Gordin, Enrique Jiménez, Yoram Cohen, Hadar Averbuch-Elor

The cuneiform writing system served as the medium for transmitting knowledgein the ancient Near East for a period of over three thousand years. Cuneiformsigns have a complex internal structure which is the subject of expert paleographicanalysis, as variations in sign shapes bear witness to historical developments andtransmission of writing and culture over time. However, prior automated techniquesmostly treat sign types as categorical and do not explicitly model their highly variedinternal configurations. In this work, we present an unsupervised approach forrecovering the fine-grained internal configuration of cuneiform signs by leveragingpowerful generative models and the appearance and structure of prototype fontimages as priors. Our approach, ProtoSnap, enforces structural consistency onmatches found with deep image features to estimate the diverse configurationsof cuneiform characters, snapping a skeleton-based template to photographedcuneiform signs. We provide a new benchmark of expert annotations and evaluateour method on this task. Our evaluation shows that our approach succeeds inaligning prototype skeletons to a wide variety of cuneiform signs. Moreover, weshow that conditioning on structures produced by our method allows for generatingsynthetic data with correct structural configurations, significantly boosting theperformance of cuneiform sign recognition beyond existing techniques, in particularover rare signs. Our code, data, and trained models are available at the project page:https://tau-vailab.github.io/ProtoSnap/

Applications · Robotics

Haofei Lu, Zhe Wu, Junliang Xing, Jianshu Li, Ruoyu Li, Zhe Li, Yuanchun Shi

Embodiment co-design aims to optimize a robot's morphology and control policy simultaneously. While prior work has demonstrated its potential for generating environment-adaptive robots, this field still faces persistent challenges in optimization efficiency due to the (i) combinatorial nature of morphological search spaces and (ii) intricate dependencies between morphology and control.We prove that the ineffective morphology representation and unbalanced reward signals between the design and control stages are key obstacles to efficiency.To advance towards efficient embodiment co-design, we propose **BodyGen**, which utilizes (1) topology-aware self-attention for both design and control, enabling efficient morphology representation with lightweight model sizes; (2) a temporal credit assignment mechanism that ensures balanced reward signals for optimization. With our findings, BodyGen achieves an average **60.03%** performance improvement against state-of-the-art baselines. We provide codes and more results on the website: https://genesisorigin.github.io.

Yuchen Yuchen, Xiangzhong Fang, Hanting Chen, Yunhe Wang

Sampling from diffusion models can be seen as solving the corresponding probability flow ordinary differential equation (ODE). The solving process requires a significant number of function evaluations (NFE), making it time-consuming. Recently, several solver search frameworks have attempted to find better-performing model-specific solvers. However, predicting the impact of intermediate solving strategies on final sample quality remains challenging, rendering the search process inefficient. In this paper, we propose a novel method for designing solving strategies. We first introduce a unified prediction formula for linear multistep solvers. Subsequently, we present a solver distillation framework, which enables a student solver to mimic the sampling trajectory generated by a teacher solver with more steps. We utilize the mean Euclidean distance between the student and teacher sampling trajectories as a metric, facilitating rapid adjustment and optimization of intermediate solving strategies. The design space of our framework encompasses multiple aspects, including prediction coefficients, time step schedules, and time scaling factors. Our framework has the ability to complete a solver search for Stable-Diffusion in under 12 total GPU hours. Compared to previous reinforcement learning-based search frameworks, our approach achieves over a 10$\times$ increase in search efficiency. With just 5 NFE, we achieve FID scores of 3.23 on CIFAR10, 7.16 on ImageNet-64, 5.44 on LSUN-Bedroom, and 12.52 on MS-COCO, resulting in a 2$\times$ sampling acceleration ratio compared to handcrafted solvers.

Miscellaneous Aspects of Machine Learning · Representation Learning

Yichao Liang, Nishanth Kumar, Hao Tang, Adrian Weller, Joshua B Tenenbaum, Tom Silver, Joao F. Henriques, Kevin Ellis

Broadly intelligent agents should form task-specific abstractions that selectively expose the essential elements of a task, while abstracting away the complexity of the raw sensorimotor space. In this work, we present Neuro-Symbolic Predicates, a first-order abstraction language that combines the strengths of symbolic and neural knowledge representations. We outline an online algorithm for inventing such predicates and learning abstract world models. We compare our approach to hierarchical reinforcement learning, vision-language model planning, and symbolic predicate invention approaches, on both in- and out-of-distribution tasks across five simulated robotic domains. Results show that our approach offers better sample complexity, stronger out-of-distribution generalization, and improved interpretability.

Deep Learning · Generative Models and Autoencoders

Jincheng Zhong, XiangCheng Zhang, Jianmin Wang, Mingsheng Long

Recent advancements in diffusion models have revolutionized generative modeling. However, the impressive and vivid outputs they produce often come at the cost of significant model scaling and increased computational demands. Consequently, building personalized diffusion models based on off-the-shelf models has emerged as an appealing alternative. In this paper, we introduce a novel perspective on conditional generation for transferring a pre-trained model. From this viewpoint, we propose *Domain Guidance*, a straightforward transfer approach that leverages pre-trained knowledge to guide the sampling process toward the target domain. Domain Guidance shares a formulation similar to advanced classifier-free guidance, facilitating better domain alignment and higher-quality generations. We provide both empirical and theoretical analyses of the mechanisms behind Domain Guidance. Our experimental results demonstrate its substantial effectiveness across various transfer benchmarks, achieving over a 19.6\% improvement in FID and a 23.4\% improvement in FD$_\text{DINOv2}$ compared to standard fine-tuning. Notably, existing fine-tuned models can seamlessly integrate Domain Guidance to leverage these benefits, without additional training.

Deep Learning · Generative Models and Autoencoders

Connor Mooney, Zhongjian Wang, Jack Xin, Yifeng Yu

We establish global well-posedness and convergence of the score-based generative models (SGM) under minimal general assumptions of initial data for score estimation. For the smooth case, we start from a Lipschitz bound of the score function with optimal time length. The optimality is validated by an example whose Lipschitz constant of scores is bounded at initial but blows up in finite time. This necessitates the separation of time scales in conventional bounds for non-log-concave distributions. In contrast, our follow up analysis only relies on a local Lipschitz condition and is valid globally in time. This leads to the convergence of numerical scheme without time separation. For the non-smooth case, we show that the optimal Lipschitz bound is $O(1/t)$ in the point-wise sense for distributions supported on a compact, smooth and low-dimensional manifold with boundary.

Chi Zhang, Huaping Zhong, Kuan Zhang, Chengliang Chai, Rui Wang, Xinlin Zhuang, Tianyi Bai, Qiu Jiantao, Lei Cao, Ju Fan 等

Data selection is of great significance in pretraining large language models, given the variation in quality within the large-scale available training corpora. To achieve this, researchers are currently investigating the use of data influence to measure the importance of data instances, $i.e.,$ a high influence score indicates that incorporating this instance to the training set is likely to enhance the model performance. Consequently, they select the top-$k$ instances with the highest scores. However, this approach has several limitations. (1) Calculating the accurate influence of all available data is time-consuming.(2) The selected data instances are not diverse enough, which may hinder the pretrained model's ability to generalize effectively to various downstream tasks.In this paper, we introduce $\texttt{Quad}$, a data selection approach that considers both quality and diversity by using data influence to achieve state-of-the-art pretraining results.To compute the influence ($i.e.,$ the quality) more accurately and efficiently, we incorporate the attention layers to capture more semantic details, which can be accelerated through the Kronecker product. For the diversity, $\texttt{Quad}$ clusters the dataset into similar data instances within each cluster and diverse instances across different clusters. For each cluster, if we opt to select data from it, we take some samples to evaluate the influence to prevent processing all instances. Overall, we favor clusters with highly influential instances (ensuring high quality) or clusters that have been selected less frequently (ensuring diversity), thereby well balancing between quality and diversity. Experiments on Slimpajama and FineWeb over 7B large language models demonstrate that $\texttt{Quad}$ significantly outperforms other data selection methods with a low FLOPs consumption. Further analysis also validates the effectiveness of our influence calculation.

Pin Chen, Zexin Xu, Qing Mo, Hongjin Zhong, Fengyang Xu, Yutong Lu

Supervised machine learning techniques are increasingly being adopted to speed up electronic structure predictions, serving as alternatives to first-principles methods like Density Functional Theory (DFT). Although current DFT datasets mainly emphasize chemical properties and atomic forces, the precise prediction of electronic charge density is essential for accurately determining a system's total energy and ground state properties. In this study, we introduce a novel electronic charge density dataset named ECD, which encompasses 140,646 stable crystal geometries with medium-precision Perdew–Burke–Ernzerhof (PBE) functional data. Within this dataset, a subset of 7,147 geometries includes high-precision electronic charge density data calculated using the Heyd–Scuseria–Ernzerhof (HSE) functional in DFT. By designing various benchmark tasks for crystalline materials and emphasizing training with large-scale PBE data while fine-tuning with a smaller subset of high-precision HSE data, we demonstrate the efficacy of current machine learning models in predicting electronic charge densities.The ECD dataset and baseline models are open-sourced to support community efforts in developing new methodologies and accelerating materials design and applications.

Applications · Time Series

Yuxiao Hu, Qian Li, Dongxiao Zhang, Jinyue Yan, Yuntian Chen

Recently, leveraging pre-trained Large Language Models (LLMs) for time series (TS) tasks has gained increasing attention, which involves activating and enhancing LLMs' capabilities. Many methods aim to activate LLMs' capabilities based on token-level alignment, but overlook LLMs' inherent strength in natural language processing — their deep understanding of linguistic logic and structure rather than superficial embedding processing. We propose Context-Alignment (CA), a new paradigm that aligns TS with a linguistic component in the language environments familiar to LLMs to enable LLMs to contextualize and comprehend TS data, thereby activating their capabilities. Specifically, such context-level alignment comprises structural alignment and logical alignment, which is achieved by Dual-Scale Context-Alignment GNNs (DSCA-GNNs) applied to TS-language multimodal inputs. Structural alignment utilizes dual-scale nodes to describe hierarchical structure in TS-language, enabling LLMs to treat long TS data as a whole linguistic component while preserving intrinsic token features. Logical alignment uses directed edges to guide logical relationships, ensuring coherence in the contextual semantics. Following the DSCA-GNNs framework, we propose an instantiation method of CA, termed Few-Shot prompting Context-Alignment (FSCA), to enhance the capabilities of pre-trained LLMs in handling TS tasks. FSCA can be flexibly and repeatedly integrated into various layers of pre-trained LLMs to improve awareness of logic and structure, thereby enhancing performance. Extensive experiments show the effectiveness of FSCA and the importance of Context-Alignment across tasks, particularly in few-shot and zero-shot forecasting, confirming that Context-Alignment provides powerful prior knowledge on context. The code is open-sourced at https://github.com/tokaka22/ICLR25-FSCA.

Pin Chen, Zexin Xu, Qing Mo, Hongjin Zhong, Fengyang Xu, Yutong Lu

Supervised machine learning techniques are increasingly being adopted to speed up electronic structure predictions, serving as alternatives to first-principles methods like Density Functional Theory (DFT). Although current DFT datasets mainly emphasize chemical properties and atomic forces, the precise prediction of electronic charge density is essential for accurately determining a system's total energy and ground state properties. In this study, we introduce a novel electronic charge density dataset named ECD, which encompasses 140,646 stable crystal geometries with medium-precision Perdew–Burke–Ernzerhof (PBE) functional data. Within this dataset, a subset of 7,147 geometries includes high-precision electronic charge density data calculated using the Heyd–Scuseria–Ernzerhof (HSE) functional in DFT. By designing various benchmark tasks for crystalline materials and emphasizing training with large-scale PBE data while fine-tuning with a smaller subset of high-precision HSE data, we demonstrate the efficacy of current machine learning models in predicting electronic charge densities.The ECD dataset and baseline models are open-sourced to support community efforts in developing new methodologies and accelerating materials design and applications.

Reinforcement Learning · Batch/Offline

Yiqin Yang, Quanwei Wang, Chenghao Li, Hao Hu, Chengjie Wu, Yuhua Jiang, Dianyu Zhong, Ziyou Zhang, Qianchuan Zhao, Chongjie Zhang 等

Research in offline reinforcement learning (RL) marks a paradigm shift in RL. However, a critical yet under-investigated aspect of offline RL is determining the subset of the offline dataset, which is used to improve algorithm performance while accelerating algorithm training. Moreover, the size of reduced datasets can uncover the requisite offline data volume essential for addressing analogous challenges. Based on the above considerations, we propose identifying Reduced Datasets for Offline RL (ReDOR) by formulating it as a gradient approximation optimization problem. We prove that the common actor-critic framework in reinforcement learning can be transformed into a submodular objective. This insight enables us to construct a subset by adopting the orthogonal matching pursuit (OMP). Specifically, we have made several critical modifications to OMP to enable successful adaptation with Offline RL algorithms. The experimental results indicate that the data subsets constructed by the ReDOR can significantly improve algorithm performance with low computational complexity.

Reinforcement Learning · Deep RL

Kuo-Han Hung, Pang-Chi Lo, Jia-Fong Yeh, Han-Yuan Hsu, Yi-Ting Chen, Winston Hsu

We study reward models for long-horizon manipulation by learning from action-free videos and language instructions, which we term the visual-instruction correlation (VIC) problem. Existing VIC methods face challenges in learning rewards for long-horizon tasks due to their lack of sub-stage awareness, difficulty in modeling task complexities, and inadequate object state estimation. To address these challenges,we introduce VICtoR, a novel hierarchical VIC reward model capable of providing effective reward signals for long-horizon manipulation tasks. Trained solely on primitive motion demonstrations, VICtoR effectively provides precise reward signals for long-horizon tasks by assessing task progress at various stages using a novel stage detector and motion progress evaluator. We conducted extensive experiments in both simulated and real-world datasets. The results suggest that VICtoR outperformed the best existing methods, achieving a 43% improvement in success rates for long-horizon tasks. Our project page can be found at https://cmlab-victor.github.io/cmlab-vicotor.github.io/.

Deep Learning · Large Language Models

Pengxiang Li, Lu Yin, Shiwei Liu

Large Language Models (LLMs) have achieved remarkable success, yet recent findings reveal that their deeper layers often contribute minimally and can be pruned without affecting overall performance. While some view this as an opportunity for model compression, we identify it as a training shortfall rooted in the widespread use of Pre-Layer Normalization (Pre-LN). We demonstrate that Pre-LN, commonly employed in models like GPT and LLaMA, leads to diminished gradient norms in its deeper layers, reducing their effectiveness. In contrast, Post-Layer Normalization (Post-LN) preserves larger gradient norms in deeper layers but suffers from vanishing gradients in earlier layers. To address this, we introduce Mix-LN, a novel normalization technique that combines the strengths of Pre-LN and Post-LN within the same model. Mix-LN applies Post-LN to the earlier layers and Pre-LN to the deeper layers, ensuring more uniform gradient norms across layers. This allows all parts of the network—both shallow and deep layers—to contribute effectively to training. Extensive experiments with various model sizes demonstrate that Mix-LN consistently outperforms both Pre-LN and Post-LN, promoting more balanced, healthier gradient norms throughout the network, and enhancing the overall quality of LLM pre-training. Furthermore, we demonstrate that models pre-trained with Mix-LN learn better compared to those using Pre-LN or Post-LN during supervised fine-tuning, highlighting the critical importance of high-quality deep layers. By effectively addressing the inefficiencies of deep layers in current LLMs, Mix-LN unlocks their potential, enhancing model capacity without increasing model size. Our code is available at https://github.com/pixeli99/MixLN.

Reinforcement Learning · Deep RL

Yuhua Jiang, Qihan Liu, Yiqin Yang, Xiaoteng Ma, Dianyu Zhong, Hao Hu, Jun Yang, Bin Liang, Bo XU, Chongjie Zhang 等

Exploration in sparse reward environments remains a significant challenge in reinforcement learning, particularly in Contextual Markov Decision Processes (CMDPs), where environments differ across episodes. Existing episodic intrinsic motivation methods for CMDPs primarily rely on count-based approaches, which are ineffective in large state spaces, or on similarity-based methods that lack appropriate metrics for state comparison. To address these shortcomings, we propose Episodic Novelty Through Temporal Distance (ETD), a novel approach that introduces temporal distance as a robust metric for state similarity and intrinsic reward computation. By employing contrastive learning, ETD accurately estimates temporal distances and derives intrinsic rewards based on the novelty of states within the current episode. Extensive experiments on various benchmark tasks demonstrate that ETD significantly outperforms state-of-the-art methods, highlighting its effectiveness in enhancing exploration in sparse reward CMDPs.

Applications · Time Series

Qi Li, Zhenyu Zhang, Lei Yao, Zhaoxia Li, Tianyi Zhong, Yong Zhang

Diffusion-based denoising models have demonstrated impressive performance in probabilistic forecasting for multivariate time series (MTS). Nonetheless, existing approaches often model the entire data distribution, neglecting the variability in uncertainty across different components of the time series. This paper introduces a Diffusion-based Decoupled Deterministic and Uncertain ($\mathrm{D^3U}$) framework for probabilistic MTS forecasting. The framework integrates non-probabilistic forecasting with conditional diffusion generation, enabling both accurate point predictions and probabilistic forecasting. $\mathrm{D^3U}$ utilizes a point forecasting model to non-probabilistically model high-certainty components in the time series, generating embedded representations that are conditionally injected into a diffusion model. To better model high-uncertainty components, a patch-based denoising network (PatchDN) is designed in the conditional diffusion model. Designed as a plug-and-play framework, $\mathrm{D^3U}$ can be seamlessly integrated into existing point forecasting models to provide probabilistic forecasting capabilities. It can also be applied to other conditional diffusion methods that incorporate point forecasting models. Experiments on six real-world datasets demonstrate that our method achieves over a 20\% improvement in both point and probabilistic forecasting performance in MTS long-term forecasting compared to state-of-the-art (SOTA) probabilistic forecasting methods. Additionally, extensive ablation studies further validate the effectiveness of the $\mathrm{D^3U}$ framework.