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Applications/Neuroscience, Cognitive Science

Jiaxing Xu, Yunhan Yang, David Huang, Sophi Shilpa Gururajapathy, Yiping Ke, Miao Qiao, Alan Wang, Haribalan Kumar, Josh McGeown, Eryn Kwon

This paper presents a comprehensive and quality collection of functional human brain network data for potential research in the intersection of neuroscience, machine learning, and graph analytics. Anatomical and functional MRI images have been used to understand the functional connectivity of the human brain and are particularly important in identifying underlying neurodegenerative conditions such as Alzheimer's, Parkinson's, and Autism. Recently, the study of the brain in the form of brain networks using machine learning and graph analytics has become increasingly popular, especially to predict the early onset of these conditions. A brain network, represented as a graph, retains rich structural and positional information that traditional examination methods are unable to capture. However, the lack of publicly accessible brain network data prevents researchers from data-driven explorations. One of the main difficulties lies in the complicated domain-specific preprocessing steps and the exhaustive computation required to convert the data from MRI images into brain networks. We bridge this gap by collecting a large amount of MRI images from public databases and a private source, working with domain experts to make sensible design choices, and preprocessing the MRI images to produce a collection of brain network datasets. The datasets originate from 6 different sources, cover 4 brain conditions, and consist of a total of 2,702 subjects. We test our graph datasets on 12 machine learning models to provide baselines and validate the data quality on a recent graph analysis model. To lower the barrier to entry and promote the research in this interdisciplinary field, we release our brain network data and complete preprocessing details including codes at https://doi.org/10.17608/k6.auckland.21397377 and https://github.com/brainnetuoa/data_driven_network_neuroscience.

Applications/Neuroscience, Cognitive Science

Drew Linsley, Ivan F Rodriguez Rodriguez, Thomas FEL, Michael Arcaro, Saloni Sharma, Margaret Livingstone, Thomas Serre

One of the most impactful findings in computational neuroscience over the past decade is that the object recognition accuracy of deep neural networks (DNNs) correlates with their ability to predict neural responses to natural images in the inferotemporal (IT) cortex. This discovery supported the long-held theory that object recognition is a core objective of the visual cortex, and suggested that more accurate DNNs would serve as better models of IT neuron responses to images. Since then, deep learning has undergone a revolution of scale: billion parameter-scale DNNs trained on billions of images are rivaling or outperforming humans at visual tasks including object recognition. Have today's DNNs become more accurate at predicting IT neuron responses to images as they have grown more accurate at object recognition?Surprisingly, across three independent experiments, we find that this is not the case. DNNs have become progressively worse models of IT as their accuracy has increased on ImageNet. To understand why DNNs experience this trade-off and evaluate if they are still an appropriate paradigm for modeling the visual system, we turn to recordings of IT that capture spatially resolved maps of neuronal activity elicited by natural images. These neuronal activity maps reveal that DNNs trained on ImageNet learn to rely on different visual features than those encoded by IT and that this problem worsens as their accuracy increases. We successfully resolved this issue with the neural harmonizer, a plug-and-play training routine for DNNs that aligns their learned representations with humans. Our results suggest that harmonized DNNs break the trade-off between ImageNet accuracy and neural prediction accuracy that assails current DNNs and offer a path to more accurate models of biological vision. Our work indicates that the standard approach for modeling IT with task-optimized DNNs needs revision, and other biological constraints, including human psychophysics data, are needed to accurately reverse-engineer the visual cortex.

Applications/Neuroscience, Cognitive Science

Kushin Mukherjee, Holly Huey, Xuanchen Lu, Yael Vinker, Rio Aguina-Kang, Ariel Shamir, Judith Fan

Sketching is a powerful tool for creating abstract images that are sparse but meaningful. Sketch understanding poses fundamental challenges for general-purpose vision algorithms because it requires robustness to the sparsity of sketches relative to natural visual inputs and because it demands tolerance for semantic ambiguity, as sketches can reliably evoke multiple meanings. While current vision algorithms have achieved high performance on a variety of visual tasks, it remains unclear to what extent they understand sketches in a human-like way. Here we introduce $\texttt{SEVA}$, a new benchmark dataset containing approximately 90K human-generated sketches of 128 object concepts produced under different time constraints, and thus systematically varying in sparsity. We evaluated a suite of state-of-the-art vision algorithms on their ability to correctly identify the target concept depicted in these sketches and to generate responses that are strongly aligned with human response patterns on the same sketch recognition task. We found that vision algorithms that better predicted human sketch recognition performance also better approximated human uncertainty about sketch meaning, but there remains a sizable gap between model and human response patterns. To explore the potential of models that emulate human visual abstraction in generative tasks, we conducted further evaluations of a recently developed sketch generation algorithm (Vinker et al., 2022) capable of generating sketches that vary in sparsity. We hope that public release of this dataset and evaluation protocol will catalyze progress towards algorithms with enhanced capacities for human-like visual abstraction.

Applications/Neuroscience, Cognitive Science

Rainer Engelken

Spiking Neural Networks (SNNs) are biologically-inspired models that are capable of processing information in streams of action potentials. However, simulating and training SNNs is computationally expensive due to the need to solve large systems of coupled differential equations. In this paper, we propose a novel event-based algorithm called SparseProp for simulating and training sparse SNNs. Our algorithm reduces the computational cost of both forward pass and backward pass operations from O(N) to O(log(N)) per network spike, enabling numerically exact simulations of large spiking networks and their efficient training using backpropagation through time. By exploiting the sparsity of the network, SparseProp avoids iterating through all neurons at every spike and uses efficient state updates. We demonstrate the effectiveness of SparseProp for several classical integrate-and-fire neuron models, including simulating a sparse SNN with one million LIF neurons, which is sped up by more than four orders of magnitude compared to previous implementations. Our work provides an efficient and exact solution for training large-scale spiking neural networks and opens up new possibilities for building more sophisticated brain-inspired models.

Applications/Neuroscience, Cognitive Science

Sergey Shuvaev, Evgeny Amelchenko, Dmitry Smagin, Natalia Kudryavtseva, Grigori Enikolopov, Alex Koulakov

Social conflict is a survival mechanism yielding both normal and pathological behaviors. To understand its underlying principles, we collected behavioral and whole-brain neural data from mice advancing through stages of social conflict. We modeled the animals’ interactions as a normal-form game using Bayesian inference to account for the partial observability of animals’ strengths. We find that our behavioral and neural data are consistent with the first-level Theory of Mind (1-ToM) model where mice form “primary” beliefs about the strengths of all mice involved and “secondary” beliefs that estimate the beliefs of their opponents. Our model identifies the brain regions that carry the information about these beliefs and offers a framework for studies of social behaviors in partially observable settings.

Applications/Neuroscience, Cognitive Science

Gehua Ma, Runhao Jiang, Rui Yan, Huajin Tang

Developing computational models of neural response is crucial for understanding sensory processing and neural computations. Current state-of-the-art neural network methods use temporal filters to handle temporal dependencies, resulting in an **unrealistic and inflexible processing paradigm**. Meanwhile, these methods target **trial-averaged firing rates** and fail to capture important features in spike trains. This work presents the temporal conditioning spiking latent variable models (***TeCoS-LVM***) to simulate the neural response to natural visual stimuli. We use spiking neurons to produce spike outputs that directly match the recorded trains. This approach helps to avoid losing information embedded in the original spike trains. We exclude the temporal dimension from the model parameter space and introduce a temporal conditioning operation to allow the model to adaptively explore and exploit temporal dependencies in stimuli sequences in a **natural paradigm**. We show that TeCoS-LVM models can produce more realistic spike activities and accurately fit spike statistics than powerful alternatives. Additionally, learned TeCoS-LVM models can generalize well to longer time scales. Overall, while remaining computationally tractable, our model effectively captures key features of neural coding systems. It thus provides a useful tool for building accurate predictive computational accounts for various sensory perception circuits.

Applications/Neuroscience, Cognitive Science

Gabriel Sarch, Michael Tarr, Katerina Fragkiadaki, Leila Wehbe

The alignment between deep neural network (DNN) features and cortical responses currently provides the most accurate quantitative explanation for higher visual areas. At the same time, these model features have been critiqued as uninterpretable explanations, trading one black box (the human brain) for another (a neural network). In this paper, we train networks to directly predict, from scratch, brain responses to images from a large-scale dataset of natural scenes (Allen et. al., 2021). We then use "network dissection" (Bau et. al., 2017), an explainable AI technique used for enhancing neural network interpretability by identifying and localizing the most significant features in images for individual units of a trained network, and which has been used to study category selectivity in the human brain (Khosla & Wehbe, 2022). We adapt this approach to create a hypothesis-neutral model that is then used to explore the tuning properties of specific visual regions beyond category selectivity, which we call "brain dissection". We use brain dissection to examine a range of ecologically important, intermediate properties, including depth, surface normals, curvature, and object relations across sub-regions of the parietal, lateral, and ventral visual streams, and scene-selective regions. Our findings reveal distinct preferences in brain regions for interpreting visual scenes, with ventro-lateral areas favoring closer and curvier features, medial and parietal areas opting for more varied and flatter 3D elements, and the parietal region uniquely preferring spatial relations. Scene-selective regions exhibit varied preferences, as the retrosplenial complex prefers distant and outdoor features, while the occipital and parahippocampal place areas favor proximity, verticality, and in the case of the OPA, indoor elements. Such findings show the potential of using explainable AI to uncover spatial feature selectivity across the visual cortex, contributing to a deeper, more fine-grained understanding of the functional characteristics of human visual cortex when viewing natural scenes.

Applications/Neuroscience, Cognitive Science

Tao Fang, Qian Zheng, Gang Pan

Although existing fMRI-to-image reconstruction methods could predict high-quality images, they do not explicitly consider the semantic gap between training and testing data, resulting in reconstruction with unstable and uncertain semantics. This paper addresses the problem of generalized fMRI-to-image reconstruction by explicitly alleviates the semantic gap. Specifically, we leverage the pre-trained CLIP model to map the training data to a compact feature representation, which essentially extends the sparse semantics of training data to dense ones, thus alleviating the semantic gap of the instances nearby known concepts (i.e., inside the training super-classes). Inspired by the robust low-level representation in fMRI data, which could help alleviate the semantic gap for instances that far from the known concepts (i.e., outside the training super-classes), we leverage structural information as a general cue to guide image reconstruction. Further, we quantify the semantic uncertainty based on probability density estimation and achieve Generalized fMRI-to-image reconstruction by adaptively integrating Expanded Semantics and Structural information (GESS) within a diffusion process. Experimental results demonstrate that the proposed GESS model outperforms state-of-the-art methods, and we propose a generalized scenario split strategy to evaluate the advantage of GESS in closing the semantic gap.

Applications/Neuroscience, Cognitive Science

Aran Nayebi, Rishi Rajalingham, Mehrdad Jazayeri, Guangyu Robert Yang

Humans and animals have a rich and flexible understanding of the physical world, which enables them to infer the underlying dynamical trajectories of objects and events, plausible future states, and use that to plan and anticipate the consequences of actions.However, the neural mechanisms underlying these computations are unclear.We combine a goal-driven modeling approach with dense neurophysiological data and high-throughput human behavioral readouts that contain thousands of comparisons to directly impinge on this question.Specifically, we construct and evaluate several classes of sensory-cognitive networks to predict the future state of rich, ethologically-relevant environments, ranging from self-supervised end-to-end models with pixel-wise or object-slot objectives, to models that future predict in the latent space of purely static image-pretrained or dynamic video-pretrained foundation models.We find that ``scale is \emph{not} all you need'', and that many state-of-the-art machine learning models fail to perform well on our neural and behavioral benchmarks for future prediction.In fact, only one class of models matches these data well overall.We find that neural responses are currently best predicted by models trained to predict the future state of their environment in the \emph{latent} space of pretrained foundation models optimized for \emph{dynamic} scenes in a self-supervised manner.These models also approach the neurons' ability to predict the environmental state variables that are visually hidden from view, despite not being explicitly trained to do so.Finally, we find that not all foundation model latents are equal.Notably, models that future predict in the latent space of video foundation models that are optimized to support a \emph{diverse} range of egocentric sensorimotor tasks, reasonably match \emph{both} human behavioral error patterns and neural dynamics across all environmental scenarios that we were able to test.Overall, these findings suggest that the neural mechanisms and behaviors of primate mental simulation have strong inductive biases associated with them, and are thus far most consistent with being optimized to future predict on \emph{reusable} visual representations that are useful for Embodied AI more generally.

Applications/Neuroscience, Cognitive Science

Saurabh Sihag, Gonzalo Mateos, Corey McMillan, Alejandro Ribeiro

In computational neuroscience, there has been an increased interest in developing machine learning algorithms that leverage brain imaging data to provide estimates of "brain age" for an individual. Importantly, the discordance between brain age and chronological age (referred to as "brain age gap") can capture accelerated aging due to adverse health conditions and therefore, can reflect increased vulnerability towards neurological disease or cognitive impairments. However, widespread adoption of brain age for clinical decision support has been hindered due to lack of transparency and methodological justifications in most existing brain age prediction algorithms. In this paper, we leverage coVariance neural networks (VNN) to propose an explanation-driven and anatomically interpretable framework for brain age prediction using cortical thickness features. Specifically, our brain age prediction framework extends beyond the coarse metric of brain age gap in Alzheimer’s disease (AD) and we make two important observations: (i) VNNs can assign anatomical interpretability to elevated brain age gap in AD by identifying contributing brain regions, (ii) the interpretability offered by VNNs is contingent on their ability to exploit specific eigenvectors of the anatomical covariance matrix. Together, these observations facilitate an explainable and anatomically interpretable perspective to the task of brain age prediction.

Applications/Neuroscience, Cognitive Science

Qi Xu, Yuyuan Gao, Jiangrong Shen, Yaxin Li, Xuming Ran, Huajin Tang, Gang Pan

Spiking neural networks (SNNs) serve as one type of efficient model to process spatio-temporal patterns in time series, such as the Address-Event Representation data collected from Dynamic Vision Sensor (DVS). Although convolutional SNNs have achieved remarkable performance on these AER datasets, benefiting from the predominant spatial feature extraction ability of convolutional structure, they ignore temporal features related to sequential time points. In this paper, we develop a recurrent spiking neural network (RSNN) model embedded with an advanced spiking convolutional block attention module (SCBAM) component to combine both spatial and temporal features of spatio-temporal patterns. It invokes the history information in spatial and temporal channels adaptively through SCBAM, which brings the advantages of efficient memory calling and history redundancy elimination. The performance of our model was evaluated in DVS128-Gesture dataset and other time-series datasets. The experimental results show that the proposed SRNN-SCBAM model makes better use of the history information in spatial and temporal dimensions with less memory space, and achieves higher accuracy compared to other models.

Applications/Neuroscience, Cognitive Science

Minkyu Choi, Kuan Han, Xiaokai Wang, Yizhen Zhang, Zhongming Liu

The human visual system uses two parallel pathways for spatial processing and object recognition. In contrast, computer vision systems tend to use a single feedforward pathway, rendering them less robust, adaptive, or efficient than human vision. To bridge this gap, we developed a dual-stream vision model inspired by the human eyes and brain. At the input level, the model samples two complementary visual patterns to mimic how the human eyes use magnocellular and parvocellular retinal ganglion cells to separate retinal inputs to the brain. At the backend, the model processes the separate input patterns through two branches of convolutional neural networks (CNN) to mimic how the human brain uses the dorsal and ventral cortical pathways for parallel visual processing. The first branch (WhereCNN) samples a global view to learn spatial attention and control eye movements. The second branch (WhatCNN) samples a local view to represent the object around the fixation. Over time, the two branches interact recurrently to build a scene representation from moving fixations. We compared this model with the human brains processing the same movie and evaluated their functional alignment by linear transformation. The WhereCNN and WhatCNN branches were found to differentially match the dorsal and ventral pathways of the visual cortex, respectively, primarily due to their different learning objectives, rather than their distinctions in retinal sampling or sensitivity to attention-driven eye movements. These model-based results lead us to speculate that the distinct responses and representations of the ventral and dorsal streams are more influenced by their distinct goals in visual attention and object recognition than by their specific bias or selectivity in retinal inputs. This dual-stream model takes a further step in brain-inspired computer vision, enabling parallel neural networks to actively explore and understand the visual surroundings.

Applications/Neuroscience, Cognitive Science

Junfeng Zuo, Xiao Liu, Ying Nian Wu, Si Wu, Wenhao Zhang

Time perception is critical in our daily life. An important feature of time perception is temporal scaling (TS): the ability to generate temporal sequences (e.g., motor actions) at different speeds. However, it is largely unknown about the math principle underlying temporal scaling in recurrent circuits in the brain. To shed insight, the present study investigates the temporal scaling from the Lie group point of view. We propose a canonical nonlinear recurrent circuit dynamics, modeled as a continuous attractor network, whose neuronal population responses embed a temporal sequence that is TS equivariant. Furthermore, we found the TS group operators can be explicitly represented by a control input fed into the recurrent circuit, where the input gain determines the temporal scaling factor (group parameter), and the spatial offset between the control input and network state emerges the generator. The neuronal responses in the recurrent circuit are also consistent with experimental findings. We illustrated that the recurrent circuit can drive a feedforward circuit to generate complex temporal sequences with different time scales, even in the case of negative time scaling (''time reversal''). Our work for the first time analytically links the abstract temporal scaling group and concrete neural circuit dynamics.

Applications/Neuroscience, Cognitive Science

Yan Zhuang, Qi Liu, Guanhao Zhao, Zhenya Huang, Weizhe Huang, Zachary Pardos, Enhong Chen, Jinze Wu, Xin Li

Computerized adaptive testing (CAT), as a tool that can efficiently measure student's ability, has been widely used in various standardized tests (e.g., GMAT and GRE). The adaptivity of CAT refers to the selection of the most informative questions for each student, reducing test length. Existing CAT methods do not explicitly target ability estimation accuracy since there is no student's true ability as ground truth; therefore, these methods cannot be guaranteed to make the estimate converge to the true with such limited responses. In this paper, we analyze the statistical properties of estimation and find a theoretical approximation of the true ability: the ability estimated by full responses to question bank. Based on this, a Bounded Ability Estimation framework for CAT (BECAT) is proposed in a data-summary manner, which selects a question subset that closely matches the gradient of the full responses. Thus, we develop an expected gradient difference approximation to design a simple greedy selection algorithm, and show the rigorous theoretical and error upper-bound guarantees of its ability estimate. Experiments on both real-world and synthetic datasets, show that it can reach the same estimation accuracy using 15\% less questions on average, significantly reducing test length.

Applications/Neuroscience, Cognitive Science

Fatih Dinc, Adam Shai, Mark Schnitzer, Hidenori Tanaka

Advances in optical and electrophysiological recording technologies have made it possible to record the dynamics of thousands of neurons, opening up new possibilities for interpreting and controlling large neural populations in behaving animals. A promising way to extract computational principles from these large datasets is to train data-constrained recurrent neural networks (dRNNs). Performing this training in real-time could open doors for research techniques and medical applications to model and control interventions at single-cell resolution and drive desired forms of animal behavior. However, existing training algorithms for dRNNs are inefficient and have limited scalability, making it a challenge to analyze large neural recordings even in offline scenarios. To address these issues, we introduce a training method termed Convex Optimization of Recurrent Neural Networks (CORNN). In studies of simulated recordings, CORNN attained training speeds $\sim$100-fold faster than traditional optimization approaches while maintaining or enhancing modeling accuracy. We further validated CORNN on simulations with thousands of cells that performed simple computations such as those of a 3-bit flip-flop or the execution of a timed response. Finally, we showed that CORNN can robustly reproduce network dynamics and underlying attractor structures despite mismatches between generator and inference models, severe subsampling of observed neurons, or mismatches in neural time-scales. Overall, by training dRNNs with millions of parameters in subminute processing times on a standard computer, CORNN constitutes a first step towards real-time network reproduction constrained on large-scale neural recordings and a powerful computational tool for advancing the understanding of neural computation.

Applications/Neuroscience, Cognitive Science

Yizi Zhang, Tianxiao He, Julien Boussard, Charles Windolf, Olivier Winter, Eric Trautmann, Noam Roth, Hailey Barrell, Mark Churchland, Nicholas A Steinmetz 等

Neural decoding and its applications to brain computer interfaces (BCI) are essential for understanding the association between neural activity and behavior. A prerequisite for many decoding approaches is spike sorting, the assignment of action potentials (spikes) to individual neurons. Current spike sorting algorithms, however, can be inaccurate and do not properly model uncertainty of spike assignments, therefore discarding information that could potentially improve decoding performance. Recent advances in high-density probes (e.g., Neuropixels) and computational methods now allow for extracting a rich set of spike features from unsorted data; these features can in turn be used to directly decode behavioral correlates. To this end, we propose a spike sorting-free decoding method that directly models the distribution of extracted spike features using a mixture of Gaussians (MoG) encoding the uncertainty of spike assignments, without aiming to solve the spike clustering problem explicitly. We allow the mixing proportion of the MoG to change over time in response to the behavior and develop variational inference methods to fit the resulting model and to perform decoding. We benchmark our method with an extensive suite of recordings from different animals and probe geometries, demonstrating that our proposed decoder can consistently outperform current methods based on thresholding (i.e. multi-unit activity) and spike sorting. Open source code is available at https://github.com/yzhang511/density_decoding.

Applications/Neuroscience, Cognitive Science

Richard Antonello, Aditya Vaidya, Alexander Huth

Representations from transformer-based unidirectional language models are known to be effective at predicting brain responses to natural language. However, most studies comparing language models to brains have used GPT-2 or similarly sized language models. Here we tested whether larger open-source models such as those from the OPT and LLaMA families are better at predicting brain responses recorded using fMRI. Mirroring scaling results from other contexts, we found that brain prediction performance scales logarithmically with model size from 125M to 30B parameter models, with ~15% increased encoding performance as measured by correlation with a held-out test set across 3 subjects. Similar log-linear behavior was observed when scaling the size of the fMRI training set. We also characterized scaling for acoustic encoding models that use HuBERT, WavLM, and Whisper, and we found comparable improvements with model size. A noise ceiling analysis of these large, high-performance encoding models showed that performance is nearing the theoretical maximum for brain areas such as the precuneus and higher auditory cortex. These results suggest that increasing scale in both models and data will yield incredibly effective models of language processing in the brain, enabling better scientific understanding as well as applications such as decoding.

Applications/Neuroscience, Cognitive Science

Marcus Triplett, Marta Gajowa, Hillel Adesnik, Liam Paninski

Two-photon optogenetics has transformed our ability to probe the structure and function of neural circuits. However, achieving precise optogenetic control of neural ensemble activity has remained fundamentally constrained by the problem of off-target stimulation (OTS): the inadvertent activation of nearby non-target neurons due to imperfect confinement of light onto target neurons. Here we propose a novel computational approach to this problem called Bayesian target optimisation. Our approach uses nonparametric Bayesian inference to model neural responses to optogenetic stimulation, and then optimises the laser powers and optical target locations needed to achieve a desired activity pattern with minimal OTS. We validate our approach in simulations and using data from in vitro experiments, showing that Bayesian target optimisation considerably reduces OTS across all conditions we test. Together, these results establish our ability to overcome OTS, enabling optogenetic stimulation with substantially improved precision.

Applications/Neuroscience, Cognitive Science

Shirui Chen, Linxing Jiang, Rajesh PN Rao, Eric Shea-Brown

In sampling-based Bayesian models of brain function, neural activities are assumed to be samples from probability distributions that the brain uses for probabilistic computation. However, a comprehensive understanding of how mechanistic models of neural dynamics can sample from arbitrary distributions is still lacking. We use tools from functional analysis and stochastic differential equations to explore the minimum architectural requirements for $\textit{recurrent}$ neural circuits to sample from complex distributions. We first consider the traditional sampling model consisting of a network of neurons whose outputs directly represent the samples ($\textit{sampler-only}$ network). We argue that synaptic current and firing-rate dynamics in the traditional model have limited capacity to sample from a complex probability distribution. We show that the firing rate dynamics of a recurrent neural circuit with a separate set of output units can sample from an arbitrary probability distribution. We call such circuits $\textit{reservoir-sampler networks}$ (RSNs). We propose an efficient training procedure based on denoising score matching that finds recurrent and output weights such that the RSN implements Langevin sampling. We empirically demonstrate our model's ability to sample from several complex data distributions using the proposed neural dynamics and discuss its applicability to developing the next generation of sampling-based Bayesian brain models.

Applications/Neuroscience, Cognitive Science

Hongting Ye, Yalu Zheng, Yueying Li, Ke Zhang, Youyong Kong, Yonggui Yuan

Multimodal fusion has become an important research technique in neuroscience that completes downstream tasks by extracting complementary information from multiple modalities. Existing multimodal research on brain networks mainly focuses on two modalities, structural connectivity (SC) and functional connectivity (FC). Recently, extensive literature has shown that the relationship between SC and FC is complex and not a simple one-to-one mapping. The coupling of structure and function at the regional level is heterogeneous. However, all previous studies have neglected the modal regional heterogeneity between SC and FC and fused their representations via "simple patterns", which are inefficient ways of multimodal fusion and affect the overall performance of the model. In this paper, to alleviate the issue of regional heterogeneity of multimodal brain networks, we propose a novel Regional Heterogeneous multimodal Brain networks Fusion Strategy (RH-BrainFS). Briefly, we introduce a brain subgraph networks module to extract regional characteristics of brain networks, and further use a new transformer-based fusion bottleneck module to alleviate the issue of regional heterogeneity between SC and FC. To the best of our knowledge, this is the first paper to explicitly state the issue of structural-functional modal regional heterogeneity and to propose asolution. Extensive experiments demonstrate that the proposed method outperforms several state-of-the-art methods in a variety of neuroscience tasks.