论文检索

Miscellaneous Aspects of Machine Learning/Online Learning, Active Learning and Bandits

Mingyu Xu, Zheng Lian, Lei Feng, Bin Liu, Jianhua Tao

Noisy partial label learning (noisy PLL) is an important branch of weakly supervised learning. Unlike PLL where the ground-truth label must conceal in the candidate label set, noisy PLL relaxes this constraint and allows the ground-truth label may not be in the candidate label set. To address this challenging problem, most of the existing works attempt to detect noisy samples and estimate the ground-truth label for each noisy sample. However, detection errors are unavoidable. These errors can accumulate during training and continuously affect model optimization. To this end, we propose a novel framework for noisy PLL with theoretical interpretations, called ``Adjusting Label Importance Mechanism (ALIM)''. It aims to reduce the negative impact of detection errors by trading off the initial candidate set and model outputs. ALIM is a plug-in strategy that can be integrated with existing PLL approaches. Experimental results on multiple benchmark datasets demonstrate that our method can achieve state-of-the-art performance on noisy PLL. Our code is available at: https://github.com/zeroQiaoba/ALIM.

Applications/Chemistry and Drug Discovery

John Falk, Luigi Bonati, Pietro Novelli, Michele Parrinello, Massimiliano Pontil

Interatomic potentials learned using machine learning methods have been successfully applied to atomistic simulations. However, accurate models require large training datasets, while generating reference calculations is computationally demanding. To bypass this difficulty, we propose a transfer learning algorithm that leverages the ability of graph neural networks (GNNs) to represent chemical environments together with kernel mean embeddings. We extract a feature map from GNNs pre-trained on the OC20 dataset and use it to learn the potential energy surface from system-specific datasets of catalytic processes. Our method is further enhanced by incorporating into the kernel the chemical species information, resulting in improved performance and interpretability. We test our approach on a series of realistic datasets of increasing complexity, showing excellent generalization and transferability performance, and improving on methods that rely on GNNs or ridge regression alone, as well as similar fine-tuning approaches.

Miscellaneous Aspects of Machine Learning/General Machine Learning Techniques

Lei Xu, Lei Chen, Rong Wang, Feiping Nie, Xuelong Li

Feature selection (FS) plays an important role in machine learning, which extracts important features and accelerates the learning process. In this paper, we propose a deep FS method that simultaneously conducts feature selection and differentiable $ k $-NN graph learning based on the Dirichlet Energy. The Dirichlet Energy identifies important features by measuring their smoothness on the graph structure, and facilitates the learning of a new graph that reflects the inherent structure in new feature subspace. We employ Optimal Transport theory to address the non-differentiability issue of learning $ k $-NN graphs in neural networks, which theoretically makes our method applicable to other graph neural networks for dynamic graph learning. Furthermore, the proposed framework is interpretable, since all modules are designed algorithmically. We validate the effectiveness of our model with extensive experiments on both synthetic and real-world datasets.

Theory/Learning Theory

Rattana Pukdee, Dylan Sam, J. Zico Kolter, Maria-Florina Balcan, Pradeep Ravikumar

As larger deep learning models are hard to interpret, there has been a recent focus on generating explanations of these black-box models. In contrast, we may have apriori explanations of how models should behave. In this paper, we formalize this notion as learning from explanation constraints and provide a learning theoretic framework to analyze how such explanations can improve the learning of our models. One may naturally ask, "When would these explanations be helpful?"Our first key contribution addresses this question via a class of models that satisfies these explanation constraints in expectation over new data. We provide a characterization of the benefits of these models (in terms of the reduction of their Rademacher complexities) for a canonical class of explanations given by gradient information in the settings of both linear models and two layer neural networks. In addition, we provide an algorithmic solution for our framework, via a variational approximation that achieves better performance and satisfies these constraints more frequently, when compared to simpler augmented Lagrangian methods to incorporate these explanations. We demonstrate the benefits of our approach over a large array of synthetic and real-world experiments.

Applications/Neuroscience, Cognitive Science

Saurabh Sihag, Gonzalo Mateos, Corey McMillan, Alejandro Ribeiro

In computational neuroscience, there has been an increased interest in developing machine learning algorithms that leverage brain imaging data to provide estimates of "brain age" for an individual. Importantly, the discordance between brain age and chronological age (referred to as "brain age gap") can capture accelerated aging due to adverse health conditions and therefore, can reflect increased vulnerability towards neurological disease or cognitive impairments. However, widespread adoption of brain age for clinical decision support has been hindered due to lack of transparency and methodological justifications in most existing brain age prediction algorithms. In this paper, we leverage coVariance neural networks (VNN) to propose an explanation-driven and anatomically interpretable framework for brain age prediction using cortical thickness features. Specifically, our brain age prediction framework extends beyond the coarse metric of brain age gap in Alzheimer’s disease (AD) and we make two important observations: (i) VNNs can assign anatomical interpretability to elevated brain age gap in AD by identifying contributing brain regions, (ii) the interpretability offered by VNNs is contingent on their ability to exploit specific eigenvectors of the anatomical covariance matrix. Together, these observations facilitate an explainable and anatomically interpretable perspective to the task of brain age prediction.

Reinforcement Learning/Deep RL

Stephen Chung, Ivan Anokhin, David Krueger

We propose the Thinker algorithm, a novel approach that enables reinforcement learning agents to autonomously interact with and utilize a learned world model. The Thinker algorithm wraps the environment with a world model and introduces new actions designed for interacting with the world model. These model-interaction actions enable agents to perform planning by proposing alternative plans to the world model before selecting a final action to execute in the environment. This approach eliminates the need for handcrafted planning algorithms by enabling the agent to learn how to plan autonomously and allows for easy interpretation of the agent's plan with visualization. We demonstrate the algorithm's effectiveness through experimental results in the game of Sokoban and the Atari 2600 benchmark, where the Thinker algorithm achieves state-of-the-art performance and competitive results, respectively. Visualizations of agents trained with the Thinker algorithm demonstrate that they have learned to plan effectively with the world model to select better actions. Thinker is the first work showing that an RL agent can learn to plan with a learned world model in complex environments.

Deep Learning/Generative Models and Autoencoders

Jean-Yves Franceschi, Mike Gartrell, Ludovic Dos Santos, Thibaut Issenhuth, Emmanuel de Bézenac, Mickael Chen, Alain Rakotomamonjy

Particle-based deep generative models, such as gradient flows and score-based diffusion models, have recently gained traction thanks to their striking performance. Their principle of displacing particle distributions using differential equations is conventionally seen as opposed to the previously widespread generative adversarial networks (GANs), which involve training a pushforward generator network. In this paper we challenge this interpretation, and propose a novel framework that unifies particle and adversarial generative models by framing generator training as a generalization of particle models. This suggests that a generator is an optional addition to any such generative model. Consequently, integrating a generator into a score-based diffusion model and training a GAN without a generator naturally emerge from our framework. We empirically test the viability of these original models as proofs of concepts of potential applications of our framework.

Social Aspects/Accountability, Transparency and Interpretability

Zhengxuan Wu, Atticus Geiger, Thomas Icard, Christopher Potts, Noah Goodman

Obtaining human-interpretable explanations of large, general-purpose language models is an urgent goal for AI safety. However, it is just as important that our interpretability methods are faithful to the causal dynamics underlying model behavior and able to robustly generalize to unseen inputs. Distributed Alignment Search (DAS) is a powerful gradient descent method grounded in a theory of causal abstraction that uncovered perfect alignments between interpretable symbolic algorithms and small deep learning models fine-tuned for specific tasks. In the present paper, we scale DAS significantly by replacing the remaining brute-force search steps with learned parameters -- an approach we call Boundless DAS. This enables us to efficiently search for interpretable causal structure in large language models while they follow instructions. We apply Boundless DAS to the Alpaca model (7B parameters), which, off the shelf, solves a simple numerical reasoning problem. With Boundless DAS, we discover that Alpaca does this by implementing a causal model with two interpretable boolean variables. Furthermore, we find that the alignment of neural representations with these variables is robust to changes in inputs and instructions. These findings mark a first step toward deeply understanding the inner-workings of our largest and most widely deployed language models.

Applications/Chemistry and Drug Discovery

Wengong Jin, Siranush Sarkizova, Xun Chen, Nir HaCohen, Caroline Uhler

Protein-ligand binding prediction is a fundamental problem in AI-driven drug discovery. Previous work focused on supervised learning methods for small molecules where binding affinity data is abundant, but it is hard to apply the same strategy to other ligand classes like antibodies where labelled data is limited. In this paper, we explore unsupervised approaches and reformulate binding energy prediction as a generative modeling task. Specifically, we train an energy-based model on a set of unlabelled protein-ligand complexes using SE(3) denoising score matching (DSM) and interpret its log-likelihood as binding affinity. Our key contribution is a new equivariant rotation prediction network called Neural Euler's Rotation Equations (NERE) for SE(3) DSM. It predicts a rotation by modeling the force and torque between protein and ligand atoms, where the force is defined as the gradient of an energy function with respect to atom coordinates. Using two protein-ligand and antibody-antigen binding affinity prediction benchmarks, we show that NERE outperforms all unsupervised baselines (physics-based potentials and protein language models) in both cases and surpasses supervised baselines in the antibody case.

Deep Learning/Algorithms

Yefan Zhou, TIANYU PANG, Keqin Liu, charles martin, Michael Mahoney, Yaoqing Yang

Regularization in modern machine learning is crucial, and it can take various forms in algorithmic design: training set, model family, error function, regularization terms, and optimizations. In particular, the learning rate, which can be interpreted as a temperature-like parameter within the statistical mechanics of learning, plays a crucial role in neural network training. Indeed, many widely adopted training strategies basically just define the decay of the learning rate over time. This process can be interpreted as decreasing a temperature, using either a global learning rate (for the entire model) or a learning rate that varies for each parameter. This paper proposes TempBalance, a straightforward yet effective layer-wise learning rate method. TempBalance is based on Heavy-Tailed Self-Regularization (HT-SR) Theory, an approach which characterizes the implicit self-regularization of different layers in trained models. We demonstrate the efficacy of using HT-SR-motivated metrics to guide the scheduling and balancing of temperature across all network layers during model training, resulting in improved performance during testing. We implement TempBalance on CIFAR10, CIFAR100, SVHN, and TinyImageNet datasets using ResNets, VGGs and WideResNets with various depths and widths. Our results show that TempBalance significantly outperforms ordinary SGD and carefully-tuned spectral norm regularization. We also show that TempBalance outperforms a number of state-of-the-art optimizers and learning rate schedulers.

Deep Learning/Self-Supervised Learning

Alex Tamkin, Margalit Glasgow, Xiluo He, Noah Goodman

What role do augmentations play in contrastive learning? Recent work suggests that good augmentations are label-preserving with respect to a specific downstream task. We complicate this picture by showing that label-destroying augmentations can be useful in the foundation model setting, where the goal is to learn diverse, general-purpose representations for multiple downstream tasks. We perform contrastive learning experiments on a range of image and audio datasets with multiple downstream tasks (e.g. for digits superimposed on photographs, predicting the class of one vs. the other). We find that Viewmaker Networks, a recently proposed model for learning augmentations for contrastive learning, produce label-destroying augmentations that stochastically destroy features needed for different downstream tasks. These augmentations are interpretable (e.g. altering shapes, digits, or letters added to images) and surprisingly often result in better performance compared to expert-designed augmentations, despite not preserving label information. To support our empirical results, we theoretically analyze a simple contrastive learning setting with a linear model. In this setting, label-destroying augmentations are crucial for preventing one set of features from suppressing the learning of features useful for another downstream task. Our results highlight the need for analyzing the interaction between multiple downstream tasks when trying to explain the success of foundation models.

Social Aspects/Accountability, Transparency and Interpretability

Michael Hanna, Ollie Liu, Alexandre Variengien

Pre-trained language models can be surprisingly adept at tasks they were not explicitly trained on, but how they implement these capabilities is poorly understood. In this paper, we investigate the basic mathematical abilities often acquired by pre-trained language models. Concretely, we use mechanistic interpretability techniques to explain the (limited) mathematical abilities of GPT-2 small. As a case study, we examine its ability to take in sentences such as "The war lasted from the year 1732 to the year 17", and predict valid two-digit end years (years > 32). We first identify a circuit, a small subset of GPT-2 small's computational graph that computes this task's output. Then, we explain the role of each circuit component, showing that GPT-2 small's final multi-layer perceptrons boost the probability of end years greater than the start year. Finally, we find related tasks that activate our circuit. Our results suggest that GPT-2 small computes greater-than using a complex but general mechanism that activates across diverse contexts.

Social Aspects/Trustworthy Machine Learning

wenqiang wang, Chongyang Du, Tao Wang, Kaihao Zhang, Wenhan Luo, Lin Ma, Wei Liu, Xiaochun Cao

The adversarial attacks have attracted increasing attention in various fields including natural language processing. The current textual attacking models primarily focus on fooling models by adding character-/word-/sentence-level perturbations, ignoring their influence on human perception. In this paper, for the first time in the community, we propose a novel mode of textual attack, punctuation-level attack. With various types of perturbations, including insertion, displacement, deletion, and replacement, the punctuation-level attack achieves promising fooling rates against SOTA models on typical textual tasks and maintains minimal influence on human perception and understanding of the text by mere perturbation of single-shot single punctuation. Furthermore, we propose a search method named Text Position Punctuation Embedding and Paraphrase (TPPEP) to accelerate the pursuit of optimal position to deploy the attack, without exhaustive search, and we present a mathematical interpretation of TPPEP. Thanks to the integrated Text Position Punctuation Embedding (TPPE), the punctuation attack can be applied at a constant cost of time. Experimental results on public datasets and SOTA models demonstrate the effectiveness of the punctuation attack and the proposed TPPE. We additionally apply the single punctuation attack to summarization, semantic-similarity-scoring, and text-to-image tasks, and achieve encouraging results.

Social Aspects/Privacy-preserving Statistics and Machine Learning

Georgios Kaissis, Alexander Ziller, Stefan Kolek, Anneliese Riess, Daniel Rueckert

Differentially private mechanisms restrict the membership inference capabilities of powerful (optimal) adversaries against machine learning models. Such adversaries are rarely encountered in practice. In this work, we examine a more realistic threat model relaxation, where (sub-optimal) adversaries lack access to the exact model training database, but may possess related or partial data. We then formally characterise and experimentally validate adversarial membership inference capabilities in this setting in terms of hypothesis testing errors. Our work helps users to interpret the privacy properties of sensitive data processing systems under realistic threat model relaxations and choose appropriate noise levels for their use-case.

Social Aspects/Accountability, Transparency and Interpretability

Björn Deiseroth, Mayukh Deb, Samuel Weinbach, Manuel Brack, Patrick Schramowski, Kristian Kersting

Generative transformer models have become increasingly complex, with large numbers of parameters and the ability to process multiple input modalities. Current methods for explaining their predictions are resource-intensive. Most crucially, they require prohibitively large amounts of additional memory, since they rely on backpropagation which allocates almost twice as much GPU memory as the forward pass. This makes it difficult, if not impossible, to use explanations in production. We present AtMan that provides explanations of generative transformer models at almost no extra cost. Specifically, AtMan is a modality-agnostic perturbation method that manipulates the attention mechanisms of transformers to produce relevance maps for the input with respect to the output prediction. Instead of using backpropagation, AtMan applies a parallelizable token-based search method relying on cosine similarity neighborhood in the embedding space. Our exhaustive experiments on text and image-text benchmarks demonstrate that AtMan outperforms current state-of-the-art gradient-based methods on several metrics while being computationally efficient. As such, AtMan is suitable for use in large model inference deployments.

Deep Learning/Other Representation Learning

Yimin Fan, Fahim Dalvi, Nadir Durrani, Hassan Sajjad

Neuron interpretation offers valuable insights into how knowledge is structured within a deep neural network model. While a number of neuron interpretation methods have been proposed in the literature, the field lacks a comprehensive comparison among these methods. This gap hampers progress due to the absence of standardized metrics and benchmarks. The commonly used evaluation metric has limitations, and creating ground truth annotations for neurons is impractical. Addressing these challenges, we propose an evaluation framework based on voting theory. Our hypothesis posits that neurons consistently identified by different methods carry more significant information. We rigorously assess our framework across a diverse array of neuron interpretation methods. Notable findings include: i) despite the theoretical differences among the methods, neuron ranking methods share over 60% of their rankings when identifying salient neurons, ii) the neuron interpretation methods are most sensitive to the last layer representations, iii) Probeless neuron ranking emerges as the most consistent method.

Applications/Neuroscience, Cognitive Science

Fatih Dinc, Adam Shai, Mark Schnitzer, Hidenori Tanaka

Advances in optical and electrophysiological recording technologies have made it possible to record the dynamics of thousands of neurons, opening up new possibilities for interpreting and controlling large neural populations in behaving animals. A promising way to extract computational principles from these large datasets is to train data-constrained recurrent neural networks (dRNNs). Performing this training in real-time could open doors for research techniques and medical applications to model and control interventions at single-cell resolution and drive desired forms of animal behavior. However, existing training algorithms for dRNNs are inefficient and have limited scalability, making it a challenge to analyze large neural recordings even in offline scenarios. To address these issues, we introduce a training method termed Convex Optimization of Recurrent Neural Networks (CORNN). In studies of simulated recordings, CORNN attained training speeds $\sim$100-fold faster than traditional optimization approaches while maintaining or enhancing modeling accuracy. We further validated CORNN on simulations with thousands of cells that performed simple computations such as those of a 3-bit flip-flop or the execution of a timed response. Finally, we showed that CORNN can robustly reproduce network dynamics and underlying attractor structures despite mismatches between generator and inference models, severe subsampling of observed neurons, or mismatches in neural time-scales. Overall, by training dRNNs with millions of parameters in subminute processing times on a standard computer, CORNN constitutes a first step towards real-time network reproduction constrained on large-scale neural recordings and a powerful computational tool for advancing the understanding of neural computation.

Miscellaneous Aspects of Machine Learning/Representation Learning

Sudhanshu Chanpuriya, Ryan Rossi, Anup B. Rao, Tung Mai, Nedim Lipka, Zhao Song, Cameron Musco

Graph models based on factorization of the adjacency matrix often fail to capture network structures related to links between dissimilar nodes (heterophily). We introduce a novel graph factorization model that leverages two nonnegative vectors per node to interpretably account for links between both similar and dissimilar nodes. We prove that our model can exactly represent any graph with low *arboricity*, a property that many real-world networks satisfy; our proof also applies to related models but has much greater scope than the closest prior bound, which is based on low *max degree*. Our factorization also has compelling properties besides expressiveness: due to its symmetric structure and nonnegativity, fitting the model inherently finds node communities, and the model's link predictions can be interpreted in terms of these communities. In experiments on real-world networks, we demonstrate our factorization's effectiveness on a variety of tasks, including community detection and link prediction.

Reinforcement Learning/Deep RL

Shengran Hu, Jeff Clune

Language is often considered a key aspect of human thinking, providing us with exceptional abilities to generalize, explore, plan, replan, and adapt to new situations. However, Reinforcement Learning (RL) agents are far from human-level performance in any of these abilities. We hypothesize one reason for such cognitive deficiencies is that they lack the benefits of thinking in language and that we can improve AI agents by training them to $\textit{think like humans do}$. We introduce a novel Imitation Learning framework, Thought Cloning, where the idea is to not just clone the behaviors of human demonstrators, $\textit{but also the thoughts humans have as they perform these behaviors}$. While we expect Thought Cloning to truly shine at scale on internet-sized datasets (e.g. online videos with transcripts), here we conduct experiments in a domain where the thinking and action data are synthetically generated. Results reveal that Thought Cloning learns much faster than Behavioral Cloning and its performance advantage grows the further out of distribution test tasks are, highlighting its ability to better handle novel situations. Thought Cloning also provides important benefits for AI Safety and Interpretability, and makes it easier to debug and improve AI. Because we can observe the agent’s thoughts, we can (1) more easily diagnose why things are going wrong, making it easier to fix the problem, (2) steer the agent by correcting its thinking, or (3) prevent it from doing unsafe things it plans to do. Overall, by training agents $\textit{how to think}$ as well as behave, Thought Cloning creates safer, more powerful agents.

Social Aspects/Accountability, Transparency and Interpretability

Jiachang Liu, Sam Rosen, Chudi Zhong, Cynthia Rudin

We consider an important problem in scientific discovery, namely identifying sparse governing equations for nonlinear dynamical systems. This involves solving sparse ridge regression problems to provable optimality in order to determine which terms drive the underlying dynamics. We propose a fast algorithm, OKRidge, for sparse ridge regression, using a novel lower bound calculation involving, first, a saddle point formulation, and from there, either solving (i) a linear system or (ii) using an ADMM-based approach, where the proximal operators can be efficiently evaluated by solving another linear system and an isotonic regression problem. We also propose a method to warm-start our solver, which leverages a beam search. Experimentally, our methods attain provable optimality with run times that are orders of magnitude faster than those of the existing MIP formulations solved by the commercial solver Gurobi.