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Deep Learning · Representation Learning

RONGLONG FANG, Yuesheng Xu

Deep neural networks (DNNs) have showcased their remarkable precision in approximating smooth functions. However, they suffer from the {\it spectral bias}, wherein DNNs typically exhibit a tendency to prioritize the learning of lower-frequency components of a function, struggling to effectively capture its high-frequency features. This paper is to address this issue. Notice that a function having only low frequency components may be well-represented by a shallow neural network (SNN), a network having only a few layers. By observing that composition of low frequency functions can effectively approximate a high-frequency function, we propose to learn a function containing high-frequency components by composing several SNNs, each of which learns certain low-frequency information from the given data. We implement the proposed idea by exploiting the multi-grade deep learning (MGDL) model, a recently introduced model that trains a DNN incrementally, grade by grade, a current grade learning from the residue of the previous grade only an SNN (with trainable parameters) composed with the SNNs (with fixed parameters) trained in the preceding grades as features. We apply MGDL to synthetic, manifold, colored images, and MNIST datasets, all characterized by presence of high-frequency features. Our study reveals that MGDL excels at representing functions containing high-frequency information. Specifically, the neural networks learned in each grade adeptly capture some low-frequency information, allowing their compositions with SNNs learned in the previous grades effectively representing the high-frequency features. Our experimental results underscore the efficacy of MGDL in addressing the spectral bias inherent in DNNs. By leveraging MGDL, we offer insights into overcoming spectral bias limitation of DNNs, thereby enhancing the performance and applicability of deep learning models in tasks requiring the representation of high-frequency information. This study confirms that the proposed method offers a promising solution to address the spectral bias of DNNs. The code is available on GitHub: \href{https://github.com/Ronglong-Fang/AddressingSpectralBiasviaMGDL}{\texttt{Addressing Spectral Bias via MGDL}}.

Graph Neural Networks

Zihan Tan, Guancheng Wan, Wenke Huang, Mang Ye

Personalized Federated Graph Learning (pFGL) facilitates the decentralized training of Graph Neural Networks (GNNs) without compromising privacy while accommodating personalized requirements for non-IID participants. In cross-domain scenarios, structural heterogeneity poses significant challenges for pFGL. Nevertheless, previous pFGL methods incorrectly share non-generic knowledge globally and fail to tailor personalized solutions locally under domain structural shift. We innovatively reveal that the spectral nature of graphs can well reflect inherent domain structural shifts. Correspondingly, our method overcomes it by sharing generic spectral knowledge. Moreover, we indicate the biased message-passing schemes for graph structures and propose the personalized preference module. Combining both strategies, we propose our pFGL framework $\textbf{FedSSP}$ which $\textbf{S}$hares generic $\textbf{S}$pectral knowledge while satisfying graph $\textbf{P}$references. Furthermore, We perform extensive experiments on cross-dataset and cross-domain settings to demonstrate the superiority of our framework. The code is available at https://github.com/OakleyTan/FedSSP.

Physical Models · Physics

Andrea Bonfanti, Giuseppe Bruno, Cristina Cipriani

The Neural Tangent Kernel (NTK) viewpoint is widely employed to analyze the training dynamics of overparameterized Physics-Informed Neural Networks (PINNs). However, unlike the case of linear Partial Differential Equations (PDEs), we show how the NTK perspective falls short in the nonlinear scenario. Specifically, we establish that the NTK yields a random matrix at initialization that is not constant during training, contrary to conventional belief. Another significant difference from the linear regime is that, even in the idealistic infinite-width limit, the Hessian does not vanish and hence it cannot be disregarded during training. This motivates the adoption of second-order optimization methods. We explore the convergence guarantees of such methods in both linear and nonlinear cases, addressing challenges such as spectral bias and slow convergence. Every theoretical result is supported by numerical examples with both linear and nonlinear PDEs, and we highlight the benefits of second-order methods in benchmark test cases.

Theory · Statistics

Hao Yan, Keith Levin

Spectral methods are widely used to estimate eigenvectors of a low-rank signal matrix subject to noise. These methods use the leading eigenspace of an observed matrix to estimate this low-rank signal. Typically, the entrywise estimation error of these methods depends on the coherence of the low-rank signal matrix with respect to the standard basis. In this work, we present a novel method for eigenvector estimation that avoids this dependence on coherence. Assuming a rank-one signal matrix, under mild technical conditions, the entrywise estimation error of our method provably has no dependence on the coherence under Gaussian noise (i.e., in the spiked Wigner model), and achieves the optimal estimation rate up to logarithmic factors. Simulations demonstrate that our method performs well under non-Gaussian noise and that an extension of our method to the case of a rank-$r$ signal matrix has little to no dependence on the coherence. In addition, we derive new metric entropy bounds for rank-$r$ singular subspaces under $\ell_{2,\infty}$ distance, which may be of independent interest. We use these new bounds to improve the best known lower bound for rank-$r$ eigenspace estimation under $\ell_{2,\infty}$ distance.

Dmitry Shribak, Chen-Xiao Gao, Yitong Li, Chenjun Xiao, Bo Dai

Diffusion-based models have achieved notable empirical successes in reinforcement learning (RL) due to their expressiveness in modeling complex distributions. Despite existing methods being promising, the key challenge of extending existing methods for broader real-world applications lies in the computational cost at inference time, i.e., sampling from a diffusion model is considerably slow as it often requires tens to hundreds of iterations to generate even one sample. To circumvent this issue, we propose to leverage the flexibility of diffusion models for RL from a representation learning perspective. In particular, by exploiting the connection between diffusion models and energy-based models, we develop Diffusion Spectral Representation (Diff-SR), a coherent algorithm framework that enables extracting sufficient representations for value functions in Markov decision processes (MDP) and partially observable Markov decision processes (POMDP). We further demonstrate how Diff-SR facilitates efficient policy optimization and practical algorithms while explicitly bypassing the difficulty and inference cost of sampling from the diffusion model. Finally, we provide comprehensive empirical studies to verify the benefits of Diff-SR in delivering robust and advantageous performance across various benchmarks with both fully and partially observable settings.

Deep Learning · Theory

Jin-Hwa Kim

Recent advancements in visualizing deep neural networks provide insights into their structures and mesh extraction from Continuous Piecewise Affine (CPWA) functions. Meanwhile, developments in neural surface representation learning incorporate non-linear positional encoding, addressing issues like spectral bias; however, this poses challenges in applying mesh extraction techniques based on CPWA functions. Focusing on trilinear interpolating methods as positional encoding, we present theoretical insights and an analytical mesh extraction, showing the transformation of hypersurfaces to flat planes within the trilinear region under the eikonal constraint. Moreover, we introduce a method for approximating intersecting points among three hypersurfaces contributing to broader applications. We empirically validate correctness and parsimony through chamfer distance and efficiency, and angular distance, while examining the correlation between the eikonal loss and the planarity of the hypersurfaces.

Probabilistic Methods · Monte Carlo and Sampling Methods

Yuzhou Gu, Nikki Lijing Kuang, Yian Ma, Zhao Song, Lichen Zhang

We consider the problem of sampling from a $d$-dimensional log-concave distribution $\pi(\theta) \propto \exp(-f(\theta))$ for $L$-Lipschitz $f$, constrained to a convex body (described by $n$ hyperplanes) equipped with a barrier function, contained in a ball of radius $R$ with a $w$-warm start. We propose a \emph{robust} sampling framework that computes spectral approximations to the Hessian of the barrier functions in each iteration. We prove that for the polytope constraints, sampling with the Lee-Sidford barrier function mixes within $\widetilde O((d^2+dL^2R^2)\log(w/\delta))$ steps with a per step cost of $\widetilde O(nd^{\omega-1})$, where $\omega\approx 2.37$ is the fast matrix multiplication exponent. Compared to the prior work of Mangoubi and Vishnoi, our approach gives faster mixing time as we are able to design a generalized soft-threshold Dikin walk beyond log-barrier.We further extend our result to show how to sample from a $d$-dimensional spectrahedron, the constrained set of a semidefinite program, specified by the set $\{x\in \mathbb{R}^d: \sum_{i=1}^d x_i A_i \succeq C \}$ where $A_1,\ldots,A_d, C$ are $n\times n$ real symmetric matrices. We design a walk that mixes in $\widetilde O((nd+dL^2R^2)\log(w/\delta))$ steps with a per iteration cost of $\widetilde O(n^\omega+n^2d^{3\omega-5})$. We improve the mixing time bound of prior best Dikin walk due to Narayanan and Rakhlin that mixes in $\widetilde O((n^2d^3+n^2dL^2R^2)\log(w/\delta))$ steps.

Computer Vision

Simone Foti, Stefanos Zafeiriou, Tolga Birdal

Seams, distortions, wasted UV space, vertex-duplication, and varying resolution over the surface are the most prominent issues of the standard UV-based texturing of meshes. These issues are particularly acute when automatic UV-unwrapping techniques are used. For this reason, instead of generating textures in automatically generated UV-planes like most state-of-the-art methods, we propose to represent textures as coloured point-clouds whose colours are generated by a denoising diffusion probabilistic model constrained to operate on the surface of 3D objects. Our sampling and resolution agnostic generative model heavily relies on heat diffusion over the surface of the meshes for spatial communication between points. To enable processing of arbitrarily sampled point-cloud textures and ensure long-distance texture consistency we introduce a fast re-sampling of the mesh spectral properties used during the heat diffusion and introduce a novel heat-diffusion-based self-attention mechanism. Our code and pre-trained models are available at github.com/simofoti/UV3-TeD.

Theory · Reinforcement Learning and Planning

Stefan Stojanovic, Yassir Jedra, Alexandre Proutiere

We consider the problem of learning an $\varepsilon$-optimal policy in controlled dynamical systems with low-rank latent structure. For this problem, we present LoRa-PI (Low-Rank Policy Iteration), a model-free learning algorithm alternating between policy improvement and policy evaluation steps. In the latter, the algorithm estimates the low-rank matrix corresponding to the (state, action) value function of the current policy using the following two-phase procedure. The entries of the matrix are first sampled uniformly at random to estimate, via a spectral method, the *leverage scores* of its rows and columns. These scores are then used to extract a few important rows and columns whose entries are further sampled. The algorithm exploits these new samples to complete the matrix estimation using a CUR-like method. For this leveraged matrix estimation procedure, we establish entry-wise guarantees that remarkably, do not depend on the coherence of the matrix but only on its spikiness. These guarantees imply that LoRa-PI learns an $\varepsilon$-optimal policy using $\tilde{\cal O}({(S+A)\over \mathrm{poly}(1-\gamma)\varepsilon^2})$ samples where $S$ (resp. $A$) denotes the number of states (resp. actions) and $\gamma$ the discount factor. Our algorithm achieves this order-optimal (in $S$, $A$ and $\varepsilon$) sample complexity under milder conditions than those assumed in previously proposed approaches.

Language · Factuality

Yifu QIU, Zheng Zhao, Yftah Ziser, Anna Korhonen, Edoardo Maria Ponti, Shay Cohen

Large language models (LLMs) often exhibit undesirable behaviours, such as generating untruthful or biased content. Editing their internal representations has been shown to be effective in mitigating such behaviours on top of the existing alignment methods. We propose a novel inference-time editing method, namely spectral editing of activations (SEA), to project the input representations into directions with maximal covariance with the positive demonstrations (e.g., truthful) while minimising covariance with the negative demonstrations (e.g., hallucinated). We also extend our method to non-linear editing using feature functions. We run extensive experiments on benchmarks concerning truthfulness and bias with six open-source LLMs of different sizes and model families. The results demonstrate the superiority of SEA in effectiveness, generalisation to similar tasks, as well as computation and data efficiency. We also show that SEA editing only has a limited negative impact on other model capabilities.

Graph Neural Networks

Mohit Kataria, Sandeep Kumar, Jayadeva Dr

In the era of big data, graphs have emerged as a natural representation of intricate relationships. However, graph sizes often become unwieldy, leading to storage, computation, and analysis challenges. A crucial demand arises for methods that can effectively downsize large graphs while retaining vital insights. Graph coarsening seeks to simplify large graphs while maintaining the basic statistics of the graphs, such as spectral properties and $\epsilon$-similarity in the coarsened graph. This ensures that downstream processes are more efficient and effective. Most published methods are suitable for homophilic datasets, limiting their universal use. We propose **U**niversal **G**raph **C**oarsening (UGC), a framework equally suitable for homophilic and heterophilic datasets. UGC integrates node attributes and adjacency information, leveraging the dataset's heterophily factor. Results on benchmark datasets demonstrate that UGC preserves spectral similarity while coarsening. In comparison to existing methods, UGC is 4x to 15x faster, has lower eigen-error, and yields superior performance on downstream processing tasks even at 70% coarsening ratios.

Graph Neural Networks

Yiqing Lin, Jianheng Tang, Chenyi Zi, H. Vicky Zhao, Yuan Yao, Jia Li

Graph Anomaly Detection (GAD) aims to identify uncommon, deviated, or suspicious objects within graph-structured data. Existing methods generally focus on a single graph object type (node, edge, graph, etc.) and often overlook the inherent connections among different object types of graph anomalies. For instance, a money laundering transaction might involve an abnormal account and the broader community it interacts with. To address this, we present UniGAD, the first unified framework for detecting anomalies at node, edge, and graph levels jointly. Specifically, we develop the Maximum Rayleigh Quotient Subgraph Sampler (MRQSampler) that unifies multi-level formats by transferring objects at each level into graph-level tasks on subgraphs. We theoretically prove that MRQSampler maximizes the accumulated spectral energy of subgraphs (i.e., the Rayleigh quotient) to preserve the most significant anomaly information. To further unify multi-level training, we introduce a novel GraphStitch Network to integrate information across different levels, adjust the amount of sharing required at each level, and harmonize conflicting training goals. Comprehensive experiments show that UniGAD outperforms both existing GAD methods specialized for a single task and graph prompt-based approaches for multiple tasks, while also providing robust zero-shot task transferability.

Probabilistic Methods · Gaussian Processes

Zicheng Sun, Yixuan Zhang, Zenan Ling, Xuhui Fan, Feng Zhou

Existing permanental processes often impose constraints on kernel types or stationarity, limiting the model's expressiveness. To overcome these limitations, we propose a novel approach utilizing the sparse spectral representation of nonstationary kernels. This technique relaxes the constraints on kernel types and stationarity, allowing for more flexible modeling while reducing computational complexity to the linear level. Additionally, we introduce a deep kernel variant by hierarchically stacking multiple spectral feature mappings, further enhancing the model's expressiveness to capture complex patterns in data. Experimental results on both synthetic and real-world datasets demonstrate the effectiveness of our approach, particularly in scenarios with pronounced data nonstationarity. Additionally, ablation studies are conducted to provide insights into the impact of various hyperparameters on model performance.

Graph Neural Networks

Ting Guo, Da Wang, Jiye Liang, Kaihan Zhang, Jianchao Zeng

Zero-shot node classification is a vital task in the field of graph data processing, aiming to identify nodes of classes unseen during the training process. Prediction bias is one of the primary challenges in zero-shot node classification, referring to the model's propensity to misclassify nodes of unseen classes as seen classes. However, most methods introduce external knowledge to mitigate the bias, inadequately leveraging the inherent cluster information within the unlabeled nodes. To address this issue, we employ spectral analysis coupled with learnable class prototypes to discover the implicit cluster structures within the graph, providing a more comprehensive understanding of classes. In this paper, we propose a spectral approach for zero-shot node classification (SpeAr). Specifically, we establish an approximate relationship between minimizing the spectral contrastive loss and performing spectral decomposition on the graph, thereby enabling effective node characterization through loss minimization. Subsequently, the class prototypes are iteratively refined based on the learned node representations, initialized with the semantic vectors. Finally, extensive experiments verify the effectiveness of the SpeAr, which can further alleviate the bias problem.

Trustworthy Machine Learning

Tyler LaBonte, John Hill, Xinchen Zhang, Vidya Muthukumar, Abhishek Kumar

Modern machine learning models are prone to over-reliance on spurious correlations, which can often lead to poor performance on minority groups. In this paper, we identify surprising and nuanced behavior of finetuned models on worst-group accuracy via comprehensive experiments on four well-established benchmarks across vision and language tasks. We first show that the commonly used class-balancing techniques of mini-batch upsampling and loss upweighting can induce a decrease in worst-group accuracy (WGA) with training epochs, leading to performance no better than without class-balancing. While in some scenarios, removing data to create a class-balanced subset is more effective, we show this depends on group structure and propose a mixture method which can outperform both techniques. Next, we show that scaling pretrained models is generally beneficial for worst-group accuracy, but only in conjunction with appropriate class-balancing. Finally, we identify spectral imbalance in finetuning features as a potential source of group disparities --- minority group covariance matrices incur a larger spectral norm than majority groups once conditioned on the classes. Our results show more nuanced interactions of modern finetuned models with group robustness than was previously known. Our code is available at https://github.com/tmlabonte/revisiting-finetuning.

Datasets and Benchmarks

Richard Ren, Steven Basart, Adam Khoja, Alice Gatti, Long Phan, Xuwang Yin, Mantas Mazeika, Alexander Pan, Gabriel Mukobi, Ryan Kim 等

Performance on popular ML benchmarks is highly correlated with model scale, suggesting that most benchmarks tend to measure a similar underlying factor of general model capabilities. However, substantial research effort remains devoted to designing new benchmarks, many of which claim to measure novel phenomena. In the spirit of the Bitter Lesson, we leverage spectral analysis to measure an underlying capabilities component, the direction in benchmark-performance-space which explains most variation in model performance. In an extensive analysis of existing safety benchmarks, we find that variance in model performance on many safety benchmarks is largely explained by the capabilities component. In response, we argue that safety research should prioritize metrics which are not highly correlated with scale. Our work provides a lens to analyze both novel safety benchmarks and novel safety methods, which we hope will enable future work to make differential progress on safety.

Datasets and Benchmarks

Eirini Angeloudi, Jeroen Audenaert, Micah Bowles, Benjamin M. Boyd, David Chemaly, Brian Cherinka, Ioana Ciucă, Miles Cranmer, Aaron Do, Matthew Grayling 等

We present the `Multimodal Universe`, a large-scale multimodal dataset of scientific astronomical data, compiled specifically to facilitate machine learning research. Overall, our dataset contains hundreds of millions of astronomical observations, constituting 100TB of multi-channel and hyper-spectral images, spectra, multivariate time series, as well as a wide variety of associated scientific measurements and metadata. In addition, we include a range of benchmark tasks representative of standard practices for machine learning methods in astrophysics. This massive dataset will enable the development of large multi-modal models specifically targeted towards scientific applications. All codes used to compile the dataset, and a description of how to access the data is available at https://github.com/MultimodalUniverse/MultimodalUniverse

Datasets and Benchmarks

Felix Koehler, Simon Niedermayr, rüdiger westermann, Nils Thuerey

We introduce the **A**utoregressive **P**DE **E**mulator Benchmark (APEBench), a comprehensive benchmark suite to evaluate autoregressive neural emulators for solving partial differential equations. APEBench is based on JAX and provides a seamlessly integrated differentiable simulation framework employing efficient pseudo-spectral methods, enabling 46 distinct PDEs across 1D, 2D, and 3D. Facilitating systematic analysis and comparison of learned emulators, we propose a novel taxonomy for unrolled training and introduce a unique identifier for PDE dynamics that directly relates to the stability criteria of classical numerical methods. APEBench enables the evaluation of diverse neural architectures, and unlike existing benchmarks, its tight integration of the solver enables support for differentiable physics training and neural-hybrid emulators. Moreover, APEBench emphasizes rollout metrics to understand temporal generalization, providing insights into the long-term behavior of emulating PDE dynamics. In several experiments, we highlight the similarities between neural emulators and numerical simulators. The code is available at [github.com/tum-pbs/apebench](https://github.com/tum-pbs/apebench) and APEBench can be installed via `pip install apebench`.

Graph Neural Networks

Rui Duan, Mingjian Guang, Junli Wang, Chungang Yan, Hongda Qi, Wenkang Su, Can Tian, Haoran Yang

Polynomial-based learnable spectral graph neural networks (GNNs) utilize polynomial to approximate graph convolutions and have achieved impressive performance on graphs. Nevertheless, there are three progressive problems to be solved. Some models use polynomials with better approximation for approximating filters, yet perform worse on real-world graphs. Carefully crafted graph learning methods, sophisticated polynomial approximations, and refined coefficient constraints leaded to overfitting, which diminishes the generalization of the models. How to design a model that retains the ability of polynomial-based spectral GNNs to approximate filters while it possesses higher generalization and performance? In this paper, we propose a spectral GNN with triple filter ensemble (TFE-GNN), which extracts homophily and heterophily from graphs with different levels of homophily adaptively while utilizing the initial features. Specifically, the first and second ensembles are combinations of a set of base low-pass and high-pass filters, respectively, after which the third ensemble combines them with two learnable coefficients and yield a graph convolution (TFE-Conv). Theoretical analysis shows that the approximation ability of TFE-GNN is consistent with that of ChebNet under certain conditions, namely it can learn arbitrary filters. TFE-GNN can be viewed as a reasonable combination of two unfolded and integrated excellent spectral GNNs, which motivates it to perform well. Experiments show that TFE-GNN achieves high generalization and new state-of-the-art performance on various real-world datasets.

Deep Learning · Algorithms

Fangzhao Zhang, Mert Pilanci

Recent developments in Parameter-Efficient Fine-Tuning (PEFT) methods for pretrained deep neural networks have captured widespread interest. In this work, we study the enhancement of current PEFT methods by incorporating the spectral information of pretrained weight matrices into the fine-tuning procedure. We investigate two spectral adaptation mechanisms, namely additive tuning and orthogonal rotation of the top singular vectors, both are done via first carrying out Singular Value Decomposition (SVD) of pretrained weights and then fine-tuning the top spectral space. We provide a theoretical analysis of spectral fine-tuning and show that our approach improves the rank capacity of low-rank adapters given a fixed trainable parameter budget. We show through extensive experiments that the proposed fine-tuning model enables better parameter efficiency and tuning performance as well as benefits multi-adapter fusion. The source code will be open-sourced for reproducibility.