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Probabilistic Methods · Structure Learning

Zhengming Chen, Yewei Xia, Feng Xie, Jie Qiao, Zhifeng Hao, Ruichu Cai, Kun Zhang

We study the problem of learning discrete latent variable causal structures from mixed-type observational data. Traditional methods, such as those based on the tensor rank condition, are designed to identify discrete latent structure models and provide robust identification bounds for discrete causal models. However, when observed variables—specifically, those representing the children of latent variables—are collected at various levels with continuous data types, the tensor rank condition is not applicable, limiting further causal structure learning for latent variables. In this paper, we consider a more general case where observed variables can be either continuous or discrete, and further allow for scenarios where multiple latent parents cause the same set of observed variables. We show that, under the completeness condition, it is possible to discretize the data in a way that satisfies the full-rank assumption required by the tensor rank condition. This enables the identifiability of discrete latent structure models within mixed-type observational data. Moreover, we introduce the two-sufficient measurement condition, a more general structural assumption under which the tensor rank condition holds and the underlying latent causal structure is identifiable by a proposed two-stage identification algorithm. Extensive experiments on both simulated and real-world data validate the effectiveness of our method.

Theory · Online Learning and Bandits

Martino Bernasconi, Andrea Celli, Riccardo Colini Baldeschi, Federico Fusco, Stefano Leonardi, Matteo Russo

In the random-order model for online learning, the sequence of losses is chosen upfront by an adversary and presented to the learner after a random permutation. Any random-order input is *asymptotically* equivalent to a stochastic i.i.d.~one, but, for finite times, it may exhibit significant *non-stationarity*, which can hinder the performance of stochastic learning algorithms.While algorithms for adversarial inputs naturally maintain their regret guarantees in random order, simple no-regret algorithms exist for the stochastic model that fail against random-order instances. In this paper, we propose a general procedure to adapt stochastic learning algorithms to the random-order model without substantially affecting their regret guarantees. This allows us to recover improved regret bounds for prediction with delays, bandits with switching costs, and online learning with constraints. Finally, we investigate online classification and prove that, in random order, learnability is characterized by the VC dimension rather than by the Littlestone dimension, thus providing a further separation from the general adversarial model.

Social Aspects · Privacy

Conor Snedeker, Xinyu Zhou, Raef Bassily

We study model personalization under user-level differential privacy (DP) in the shared representation framework. In this problem, there are $n$ users whose data is statistically heterogeneous, and their optimal parameters share an unknown embedding $U^* \in\mathbb{R}^{d\times k}$ that maps the user parameters in $\mathbb{R}^d$ to low-dimensional representations in $\mathbb{R}^k$, where $k\ll d$. Our goal is to privately recover the shared embedding and the local low-dimensional representations with small excess risk in the federated setting. We propose a private, efficient federated learning algorithm to learn the shared embedding based on the FedRep algorithm in (Collins et al.,2021). Unlike (Collins et al., 2021), our algorithm satisfies differential privacy, and our results hold for the case of noisy labels. In contrast to prior work on private model personalization (Jain et al., 2021), our utility guarantees hold under a larger class of users' distributions (sub-Gaussian instead of Gaussian distributions). Additionally, in natural parameter regimes, we improve the privacy error term in (Jainet al., 2021) by a factor of $\widetilde{O}(dk)$. Next, we consider the binary classification setting. We present an information-theoretic construction to privately learn the shared embedding and derive a margin-based accuracy guarantee that is independent of $d$. Our method utilizes the Johnson-Lindenstrauss transform to reduce the effective dimensions of the shared embedding and the users' data. This result shows that dimension-independent risk bounds are possible in this setting under a margin loss.

Theory · Online Learning and Bandits

Aadirupa Saha, Tomer Koren, Yishay Mansour

We address the problem of convex optimization with dueling feedback, where the goal is to minimize a convex function given a weaker form of \emph{dueling} feedback. Each query consists of two points and the dueling feedback returns a (noisy) single-bit binary comparison of the function values of the two queried points.The translation of the function values to the single comparison bit is through a \emph{transfer function}.This problem has been addressed previously for some restricted classes of transfer functions, but here we consider a very general transfer function class which includes all functions that admit a series expansion about the origin.Our main contribution is an efficient algorithm with convergence rate of $O(\epsilon^{-4p})$ for smooth convex functions, and an optimal rate of $\widetilde O(\epsilon^{-2p})$ when the objective is both smooth and strongly convex, where $p$ is the minimal degree (with a non-zero coefficient) in the transfer's series expansion about the origin.

Deep Learning · Generative Models and Autoencoders

Muskan Dosi, Chiranjeev Chiranjeev, Kartik Thakral, Mayank Vatsa, Richa Singh

Do contemporary diffusion models preserve the class geometry of hyperspherical data? Standard diffusion models rely on isotropic Gaussian noise in the forward process, inherently favoring Euclidean spaces. However, many real-world problems involve non-Euclidean distributions, such as hyperspherical manifolds, where class-specific patterns are governed by angular geometry within hypercones. When modeled in Euclidean space, these angular subtleties are lost, leading to suboptimal generative performance. To address this limitation, we introduce \textbf{HyperSphereDiff} to align hyperspherical structures with directional noise, preserving class geometry and effectively capturing angular uncertainty. We demonstrate both theoretically and empirically that this approach aligns the generative process with the intrinsic geometry of hyperspherical data, resulting in more accurate and geometry-aware generative models. We evaluate our framework on four object datasets and two face datasets, showing that incorporating angular uncertainty better preserves the underlying hyperspherical manifold.

Deep Learning · Robustness

Junhao Dong, Piotr Koniusz, Yifei Zhang, Hao Zhu, Weiming Liu, Xinghua Qu, Yew Soon ONG

Vision-Language Models (VLMs) such as CLIP excel at zero-shot classification due to large-scale pre-training but are vulnerable to adversarial examples. Adversarial fine-tuning robustifies zero-shot models by aligning prediction scores of individual adversaries with their clean counterparts, which typically overlooks intermediate adversarial samples along the adversarial trajectory crossing the decision boundary. Such intermediate adversaries and their vicinity produce informative representations capturing the decision boundary in detail. They can be improved by sampling adversarial candidates from simplices formed by joining two consecutive vertices on the adversarial trajectory and their clean counterpart. However, sampling simplices for adversaries is very costly. To train robust VLM, we overcome these limitations by Taylor expansion and formulating an upper-bound of alignment loss that depends on the Jacobian/Hessian obtained at clean samples. As regions between clean and intermediate adversarial samples capture a larger decision landscape, we robustify VLM by plausible adversaries from simplices by our closed-form formulation equivalent to infinite uniform sampling of the simplex. We obtain state-of-the-art robustness across 15 datasets and diverse vision-language tasks.

Deep Learning · Attention Mechanisms

ning wang, Zekun Li, Tongxin Bai, Man Yao, Zhen Qin, Guoqi Li

Linear attention offers the advantages of linear inference time and fixed memory usage compared to Softmax attention. However, training large-scale language models with linear attention from scratch remains prohibitively expensive and exhibits significant performance gaps compared to Softmax-based models. To address these challenges, we focus on transforming pre-trained Softmax-based language models into linear attention models. We unify mainstream linear attention methods using a **high-order QK integration theory** and a **multi-level vocabulary decomposition**. Specifically, the QK integration theory explains the efficacy of combining linear and sparse attention from the perspective of information collection across different frequency bands. The multi-level vocabulary decomposition exponentially expands memory capacity by recursively exploiting compression loss from compressed states. Through detailed error analysis, we demonstrate superior approximation of Softmax attention achieved by our approach. To further improve performance and reduce training costs, we adopt a **soft integration strategy** with attention scores, effectively combining a sliding window mechanism. With less than 100M tokens, our method fine-tunes models to achieve linear complexity while retaining 99\% of their original performance. Compared to state-of-the-art linear attention model and method, our approach improves MMLU scores by 1.2 percentage points with minimal fine-tuning. Furthermore, even without the sliding window mechanism, our method achieves state-of-the-art performance on all test sets with 10B tokens.

General Machine Learning · Online Learning, Active Learning and Bandits

Taeckyung Lee, Sorn Chottananurak, Junsu Kim, Jinwoo Shin, Taesik Gong, Sung-Ju Lee

Deep learning models perform poorly when domain shifts exist between training and test data. Test-time adaptation (TTA) is a paradigm to mitigate this issue by adapting pre-trained models using only unlabeled test samples. However, existing TTA methods can fail under severe domain shifts, while recent active TTA approaches requiring full-class labels are impractical due to high labeling costs. To address this issue, we introduce a new setting of TTA with binary feedback, which uses a few binary feedbacks from annotators to indicate whether model predictions are correct, thereby significantly reducing the labeling burden of annotators. Under the setting, we propose BiTTA, a novel dual-path optimization framework that leverages reinforcement learning to balance binary feedback-guided adaptation on uncertain samples with agreement-based self-adaptation on confident predictions. Experiments show BiTTA achieves substantial accuracy improvements over state-of-the-art baselines, demonstrating its effectiveness in handling severe distribution shifts with minimal labeling effort.

Deep Learning · Generative Models and Autoencoders

Zijing Hu, Fengda Zhang, Kun Kuang

The practical applications of diffusion models have been limited by the misalignment between generated images and corresponding text prompts. Recent studies have introduced direct preference optimization (DPO) to enhance the alignment of these models. However, the effectiveness of DPO is constrained by the issue of visual inconsistency, where the significant visual disparity between well-aligned and poorly-aligned images prevents diffusion models from identifying which factors contribute positively to alignment during fine-tuning. To address this issue, this paper introduces D-Fusion, a method to construct DPO-trainable visually consistent samples. On one hand, by performing mask-guided self-attention fusion, the resulting images are not only well-aligned, but also visually consistent with given poorly-aligned images. On the other hand, D-Fusion can retain the denoising trajectories of the resulting images, which are essential for DPO training. Extensive experiments demonstrate the effectiveness of D-Fusion in improving prompt-image alignment when applied to different reinforcement learning algorithms.

Deep Learning · Other Representation Learning

Nico Pelleriti, Max Zimmer, Elias Wirth, Sebastian Pokutta

Deep neural networks have reshaped modern machine learning by learning powerful latent representations that often align with the manifold hypothesis: high-dimensional data lie on lower-dimensional manifolds. In this paper, we establish a connection between manifold learning and computational algebra by demonstrating how vanishing ideals can characterize the latent manifolds of deep networks. To that end, we propose a new neural architecture that (i) truncates a pretrained network at an intermediate layer, (ii) approximates each class manifold via polynomial generators of the vanishing ideal, and (iii) transforms the resulting latent space into linearly separable features through a single polynomial layer. The resulting models have significantly fewer layers than their pretrained baselines, while maintaining comparable accuracy, achieving higher throughput, and utilizing fewer parameters. Furthermore, drawing on spectral complexity analysis, we derive sharper theoretical guarantees for generalization, showing that our approach can in principle offer tighter bounds than standard deep networks. Numerical experiments confirm the effectiveness and efficiency of the proposed approach.

Probabilistic Methods

Guiomar Pescador-Barrios, Sarah Filippi, Mark van der Wilk

Many machine learning models require setting a parameter that controls their size before training, e.g. number of neurons in DNNs, or inducing points in GPs. Increasing capacity typically improves performance until all the information from the dataset is captured. After this point, computational cost keeps increasing, without improved performance. This leads to the question "How big is big enough?" We investigate this problem for Gaussian processes (single-layer neural networks) in continual learning. Here, data becomes available incrementally, and the final dataset size will therefore not be known before training, preventing the use of heuristics for setting a fixed model size. We develop a method to automatically adjust model size while maintaining near-optimal performance. Our experimental procedure follows the constraint that any hyperparameters must be set without seeing dataset properties, and we show that our method performs well across diverse datasets without the need to adjust its hyperparameter, showing it requires less tuning than others.

Applications · Neuroscience, Cognitive Science

Qi Xu, Jie Deng, Jiangrong Shen, Biwu Chen, Huajin Tang, Gang Pan

Event-based object detection has attracted increasing attention for its high temporal resolution, wide dynamic range, and asynchronous address-event representation. Leveraging these advantages, spiking neural networks (SNNs) have emerged as a promising approach, offering low energy consumption and rich spatiotemporal dynamics. To further enhance the performance of event-based object detection, this study proposes a novel hybrid spike vision Transformer (HsVT) model. The HsVT model integrates a spatial feature extraction module to capture local and global features, and a temporal feature extraction module to model time dependencies and long-term patterns in event sequences. This combination enables HsVT to capture spatiotemporal features, improving its capability in handling complex event-based object detection tasks. To support research in this area, we developed the Fall Detection dataset as a benchmark for event-based object detection tasks. The Fall DVS detection dataset protects facial privacy and reduces memory usage thanks to its event-based representation. Experimental results demonstrate that HsVT outperforms existing SNN methods and achieves competitive performance compared to ANN-based models, with fewer parameters and lower energy consumption.

Applications · Everything Else

Xiang Zhang, Jiaqi Wei, Zijie Qiu, Sheng Xu, Nanqing Dong, ZhiQiang Gao, Siqi Sun

Peptide sequencing—the process of identifying amino acid sequences from mass spectrometry data—is a fundamental task in proteomics. Non-Autoregressive Transformers (NATs) have proven highly effective for this task, outperforming traditional methods. Unlike autoregressive models, which generate tokens sequentially, NATs predict all positions simultaneously, leveraging bidirectional context through unmasked self-attention.However, existing NAT approaches often rely on Connectionist Temporal Classification (CTC) loss, which presents significant optimization challenges due to CTC's complexity and increases the risk of training failures. To address these issues, we propose an improved non-autoregressive peptide sequencing model that incorporates a structured protein sequence curriculum learning strategy. This approach adjusts protein's learning difficulty based on the model’s estimated protein generational capabilities through a sampling process, progressively learning peptide generation from simple to complex sequences. Additionally, we introduce a self-refining inference-time module that iteratively enhances predictions using learned NAT token embeddings, improving sequence accuracy at a fine-grained level. Our curriculum learning strategy reduces NAT training failures frequency by more than 90% based on sampled training over various data distributions. Evaluations on nine benchmark species demonstrate that our approach outperforms all previous methods across multiple metrics and species. Model and source code are available at https://github.com/BEAM-Labs/denovo.

Applications · Health / Medicine

Tianwei Lin, Wenqiao Zhang, Sijing Li, Yuqian Yuan, Binhe Yu, Haoyuan Li, Wanggui He, Hao Jiang, Mengze Li, Song xiaohui 等

We present **HealthGPT**, a powerful Medical Large Vision-Language Model (Med-LVLM) that integrates medical visual comprehension and generation capabilities within a unified autoregressive paradigm. Our bootstrapping philosophy is to progressively adapt heterogeneous comprehension and generation knowledge to pre-trained Large Language Models (LLMs). This is achieved through a novel heterogeneous low-rank adaptation **(H-LoRA)** technique, which is complemented by a tailored hierarchical visual perception **(HVP)** approach and a three-stage learning strategy **(TLS)**. To effectively learn the HealthGPT, we devise a comprehensive medical domain-specific comprehension and generation dataset called **VL-Health**. Experimental results demonstrate exceptional performance and scalability of HealthGPT in medical visual unified tasks. Our project can be accessed at https://github.com/DCDmllm/HealthGPT.

Deep Learning · Robustness

Yibo Xu, Dawei Zhou, Decheng Liu, Nannan Wang

Deep neural networks are found to be vulnerable to adversarial perturbations. The prompt-based defense has been increasingly studied due to its high efficiency. However, existing prompt-based defenses mainly exploited mixed prompt patterns, where critical patterns closely related to object semantics lack sufficient focus. The phase and amplitude spectra have been proven to be highly related to specific semantic patterns and crucial for robustness. To this end, in this paper, we propose a Phase and Amplitude-aware Prompting (PAP) defense. Specifically, we construct phase-level and amplitude-level prompts for each class, and adjust weights for prompting according to the model's robust performance under these prompts during training. During testing, we select prompts for each image using its predicted label to obtain the prompted image, which is inputted to the model to get the final prediction. Experimental results demonstrate the effectiveness of our method.

General Machine Learning · Supervised Learning

Teng Huang, Bin-Bin Jia, Min-Ling Zhang

In multi-dimensional classification (MDC), the semantics of objects are characterized by multiple class variables from different dimensions. Existing MDC approaches focus on designing effective class dependency modeling strategies to enhance classification performance. However, the intercoupling of multiple class variables poses a significant challenge to the precise modeling of class dependencies. In this paper, we make the first attempt towards escaping from class dependency modeling for addressing MDC problems. Accordingly, a novel MDC approach named DCOM is proposed by decoupling the interactions of different dimensions in MDC. Specifically, DCOM endeavors to identify a latent factor that encapsulates the most salient and critical feature information. This factor will facilitate partial conditional independence among class variables conditioned on both the original feature vector and the learned latent embedding. Once the conditional independence is established, classification models can be readily induced by employing simple neural networks on each dimension. Extensive experiments conducted on benchmark data sets demonstrate that DCOM outperforms other state-of-the-art MDC approaches.

Applications · Time Series

Tianci Bu, Le Zhou, Wenchuan Yang, Jianhong Mou, Kang Yang, Suoyi Tan, Feng Yao, Jingyuan Wang, Xin Lu

Trajectory data is crucial for various applications but often suffers from incompleteness due to device limitations and diverse collection scenarios. Existing imputation methods rely on sparse trajectory or travel information, such as velocity, to infer missing points. However, these approaches assume that sparse trajectories retain essential behavioral patterns, which place significant demands on data acquisition and overlook the potential of large-scale human trajectory embeddings.To address this, we propose ProDiff, a trajectory imputation framework that uses only two endpoints as minimal information. It integrates prototype learning to embed human movement patterns and a denoising diffusion probabilistic model for robust spatiotemporal reconstruction. Joint training with a tailored loss function ensures effective imputation.ProDiff outperforms state-of-the-art methods, improving accuracy by 6.28\% on FourSquare and 2.52\% on WuXi. Further analysis shows a 0.927 correlation between generated and real trajectories, demonstrating the effectiveness of our approach.

Applications · Everything Else

Anqi Lu, Junchi Yan

For the fundamental linear programming (LP) problems, the simplex method remains popular, which usually requires an appropriate initial basis as a warm start to accelerate the solving process. Predicting an initial basis close to an optimal one can often accelerate the solver, but a closer initial basis does not always result in greater acceleration. To achieve better acceleration, we propose a GNN model based on a tripartite graph representation inspired by LP duality. This approach enables more effective feature extraction for general LP problems and enhances the expressiveness of GNNs. Additionally, we introduce novel loss functions targeting basic variable selection and basis feasibility, along with data preprocessing schemes, to further improve learning capability. In addition to achieving high prediction accuracy, we enhance the quality of the initial basis for practical use. Experimental results show that our approach greatly surpasses the state-of-the-art method in predicting initial basis with greater accuracy and in reducing the number of iterations and solving time of the LP solver.

Theory · Learning Theory

Gholamali Aminian, Amir R. Asadi, Tian Li, Ahmad Beirami, Gesine Reinert, Samuel Cohen

The generalization error (risk) of a supervised statistical learning algorithm quantifies its prediction ability on previously unseen data. Inspired by exponential tilting, Li et al. (2021) proposed the {\it tilted empirical risk} (TER) as a non-linear risk metric for machine learning applications such as classification and regression problems. In this work, we examine the generalization error of the tilted empirical risk in the robustness regime under \textit{negative tilt}. Our first contribution is to provide uniform and information-theoretic bounds on the {\it tilted generalization error}, defined as the difference between the population risk and the tilted empirical risk, under negative tilt for unbounded loss function under bounded $(1+\epsilon)$-th moment of loss function for some $\epsilon\in(0,1]$ with a convergence rate of $O(n^{-\epsilon/(1+\epsilon)})$ where $n$ is the number of training samples, revealing a novel application for TER under no distribution shift. Secondly, we study the robustness of the tilted empirical risk with respect to noisy outliers at training time and provide theoretical guarantees under distribution shift for the tilted empirical risk. We empirically corroborate our findings in simple experimental setups where we evaluate our bounds to select the value of tilt in a data-driven manner.

Applications · Neuroscience, Cognitive Science

Abdulkadir Gokce, Martin Schrimpf

When trained on large-scale object classification datasets, certain artificial neural network models begin to approximate core object recognition behaviors and neural response patterns in the primate brain. While recent machine learning advances suggest that scaling compute, model size, and dataset size improves task performance, the impact of scaling on brain alignment remains unclear. In this study, we explore scaling laws for modeling the primate visual ventral stream by systematically evaluating over 600 models trained under controlled conditions on benchmarks spanning V1, V2, V4, IT and behavior. We find that while behavioral alignment continues to scale with larger models, neural alignment saturates. This observation remains true across model architectures and training datasets, even though models with stronger inductive biases and datasets with higher-quality images are more compute-efficient. Increased scaling is especially beneficial for higher-level visual areas, where small models trained on few samples exhibit only poor alignment. Our results suggest that while scaling current architectures and datasets might suffice for alignment with human core object recognition behavior, it will not yield improved models of the brain's visual ventral stream, highlighting the need for novel strategies in building brain models.