Current camouflaged object detection methods predominantly follow discriminative segmentation paradigms and heavily rely on predefined categories present in the training data, limiting their generalization to unseen or emerging camouflage objects. This limitation is further compounded by the labor-intensive and time-consuming nature of collecting camouflage imagery. Although Large Vision-Language Models (LVLMs) show potential to improve such issues with their powerful generative capabilities, their understanding of camouflage scenes is still insufficient. To bridge this gap, we introduce MMCSBench, the first comprehensive multimodal benchmark designed to evaluate and advance LVLM capabilities in camouflage scenes. MMCSBench comprises 22,537 images and 76,843 corresponding image-text pairs across five fine-grained camouflage tasks. Additionally, we propose a new task, Camouflage Efficacy Assessment (CEA), aimed at quantitatively evaluating the camouflage effectiveness of objects in images and enabling automated collection of camouflage images from large-scale databases. Extensive experiments on 26 LVLMs reveal significant shortcomings in models' ability to perceive and interpret camouflage scenes. These findings highlight the fundamental differences between natural and camouflaged visual inputs, offering insights for future research in advancing LVLM capabilities within this challenging domain.
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Applications
Vision-language models have been explored for radiology report generation with promising results. Yet, uncertainty elaborated in findings and the reasoning process for reaching clinical impressions are seldom explicitly modeled, reducing the clinical accuracy and trustworthiness of the generated reports. We present CURV, a novel framework that alleviates the limitations through integrated awareness of uncertainty and explicit reasoning capabilities. Our approach consists of three key components: (1) an uncertainty modeling mechanism that teaches the model to recognize and express appropriate levels of diagnostic confidence, (2) a structured reasoning framework that generates intermediate explanatory steps connecting visual findings to clinical impressions, and (3) a reasoning coherence reward that ensures logical consistency among findings, reasoning, and impressions. We implement CURV through a three-stage training pipeline that combines uncertainty-aware fine-tuning, reasoning initialization, and reinforcement learning. In particular, we adopt a comprehensive reward function addresses multiple aspects of report quality, incorporating medical term matching, uncertainty expression evaluation, and semantic coherence evaluation. Experimental results demonstrate that CURV generates clinically relevant reports with appropriate uncertainty expressions and transparent reasoning traces, significantly outperforming previous methods. CURV represents a substantial advancement toward interpretable and trustworthy AI-generated radiology reports, with broader implications for the deployment of vision-language models in high-stakes clinical environments where uncertainty awareness and reasoning transparency are essential.
Computer Vision · Everything Else
The integration of language and 3D perception is critical for embodied AI and robotic systems to perceive, understand, and interact with the physical world. Spatial reasoning, a key capability for understanding spatial relationships between objects, remains underexplored in current 3D vision-language research. Existing datasets often mix semantic cues (e.g., object name) with spatial context, leading models to rely on superficial shortcuts rather than genuinely interpreting spatial relationships. To address this gap, we introduce Surprise3D, a novel dataset designed to evaluate language-guided spatial reasoning segmentation in complex 3D scenes. Surprise3D consists of more than 200k vision language pairs across 900+ detailed indoor scenes from ScanNet++ v2, including more than 2.8k unique object classes. The dataset contains 89k+ human-annotated spatial queries deliberately crafted without object name, thereby mitigating shortcut biases in spatial understanding. These queries comprehensively cover various spatial reasoning skills, such as relative position, narrative perspective, parametric perspective, and absolute distance reasoning. Initial benchmarks demonstrate significant challenges for current state-of-the-art expert 3D visual grounding methods and 3D-LLMs, underscoring the necessity of our dataset and the accompanying 3D Spatial Reasoning Segmentation (3D-SRS) benchmark suite. Surprise3D and 3D-SRS aim to facilitate advancements in spatially aware AI, paving the way for effective embodied interaction and robotic planning.
Computer Vision · Image and Video Generation
Diffusion models have demonstrated remarkable capabilities in generating high-quality images. Recent advancements in Layout-to-Image (L2I) generation have leveraged positional conditions and textual descriptions to facilitate precise and controllable image synthesis. Despite overall progress, current L2I methods still exhibit suboptimal performance. Therefore, we propose InstanceAssemble, a novel architecture that incorporates layout conditions via instance-assembling attention, enabling position control with bounding boxes (bbox) and multimodal content control including texts and additional visual content. Our method achieves flexible adaption to existing DiT-based T2I models through light-weighted LoRA modules. Additionally, we propose a Layout-to-Image benchmark, Denselayout, a comprehensive benchmark for layout-to-image generation, containing 5k images with 90k instances in total. We further introduce Layout Grounding Score (LGS), an interpretable evaluation metric to more precisely assess the accuracy of L2I generation. Experiments demonstrate that our InstanceAssemble method achieves state-of-the-art performance under complex layout conditions, while exhibiting strong compatibility with diverse style LoRA modules. The code and pretrained models are publicly available at \url{https://github.com/FireRedTeam/InstanceAssemble}.
Coral reefs are vital yet vulnerable ecosystems that require continuous monitoring to support conservation. While coral reef images provide essential information in coral monitoring, interpreting such images remains challenging due to the need for domain expertise. Visual Question Answering (VQA), powered by Large Vision-Language Models (LVLMs), has great potential in user-friendly interaction with coral reef images. However, applying VQA to coral imagery demands a dedicated dataset that addresses two key challenges: domain-specific annotations and multidimensional questions. In this work, we introduce CoralVQA, the first large-scale VQA dataset for coral reef analysis. It contains 12,805 real-world coral images from 67 coral genera collected from 3 oceans, along with 277,653 question-answer pairs that comprehensively assess ecological and health-related conditions. To construct this dataset, we develop a semi-automatic data construction pipeline in collaboration with marine biologists to ensure both scalability and professional-grade data quality. CoralVQA presents novel challenges and provides a comprehensive benchmark for studying vision-language reasoning in the context of coral reef images. By evaluating several state-of-the-art LVLMs, we reveal key limitations and opportunities. These insights form a foundation for future LVLM development, with a particular emphasis on supporting coral conservation efforts.
Social Aspects · Accountability, Transparency and Interpretability
Recent advances in multimodal training have significantly improved the integration of image understanding and generation within a unified model. This study investigates how vision-language models (VLMs) handle image-understanding tasks, focusing on how visual information is processed and transferred to the textual domain. We compare *native multimodal VLMs*, models trained from scratch on multimodal data to generate both text and images, and *non-native multimodal VLMs*, models adapted from pre-trained large language models or capable of generating only text, highlighting key differences in information flow. We find that in native multimodal VLMs, image and text embeddings are more separated within the residual stream. Moreover, VLMs differ in how visual information reaches text: non-native multimodal VLMs exhibit a distributed communication pattern, where information is exchanged through multiple image tokens, whereas models trained natively for joint image and text generation tend to rely on a single post-image token that acts as a *narrow gate* for visual information. We show that ablating this single token significantly deteriorates image-understanding performance, whereas targeted, token-level interventions reliably steer image semantics and downstream text with fine-grained control.
Applications · Neuroscience, Cognitive Science
Computation in recurrent networks of neurons has been hypothesized to occur at the level of low-dimensional latent dynamics, both in artificial systems and in the brain. This hypothesis seems at odds with evidence from large-scale neuronal recordings in mice showing that neuronal population activity is high-dimensional. To demonstrate that low-dimensional latent dynamics and high-dimensional activity can be two sides of the same coin, we present an analytically solvable recurrent neural network (RNN) model whose dynamics can be exactly reduced to a low-dimensional dynamical system, but generates an activity manifold that has a high linear embedding dimension. This raises the question: Do low-dimensional latents explain the high-dimensional activity observed in mouse visual cortex? Spectral theory tells us that the covariance eigenspectrum alone does not allow us to recover the dimensionality of the latents, which can be low or high, when neurons are nonlinear. To address this indeterminacy, we develop Neural Cross-Encoder (NCE), an interpretable, nonlinear latent variable modeling method for neuronal recordings, and find that high-dimensional neuronal responses to drifting gratings and spontaneous activity in visual cortex can be reduced to low-dimensional latents, while the responses to natural images cannot. We conclude that the high-dimensional activity measured in certain conditions, such as in the absence of a stimulus, is explained by low-dimensional latents that are nonlinearly processed by individual neurons.
Social Aspects · Accountability, Transparency and Interpretability
Deep networks have shown remarkable performance across a wide range of tasks, yet getting a global concept-level understanding of how they function remains a key challenge. Many post-hoc concept-based approaches have been introduced to understand their workings, yet they are not always faithful to the model. Further, they make restrictive assumptions on the concepts a model learns, such as class-specificity, small spatial extent, or alignment to human expectations. In this work, we put emphasis on the faithfulness of such concept-based explanations and propose a new model with model-inherent mechanistic concept-explanations. Our concepts are shared across classes and, from any layer, their contribution to the logit and their input-visualization can be faithfully traced. We also leverage foundation models to propose a new concept-consistency metric, C$^2$-Score, that can be used to evaluate concept-based methods. We show that, compared to prior work, our concepts are quantitatively more consistent and users find our concepts to be more interpretable, all while retaining competitive ImageNet performance.
Computer Vision · Vision Models & Multimodal
The Arrow of Time (AoT)—time's irreversible flow shaping physical events—is fundamental to video comprehension, yet remains a significant challenge for modern large multimodal models (LMMs). Current LMMs struggle to perceive and utilize temporal directionality in video when responding to language queries, obstructing deeper temporal understanding. We tackle this deficiency by first providing a critical analysis of existing benchmarks and models. We then introduce ArrowRL, a reinforcement learning (RL)-based training strategy with an innovative reverse reward that instills AoT awareness by encouraging divergent video interpretations between forward and reversed visual frames. For rigorous evaluation, we additionally develop AoTBench, a new multi-faceted benchmark probing temporally challenging questions. Experiments show ArrowRL greatly advances temporal perception: it not only achieves substantial improvements on our challenging AoTBench but also demonstrably boosts performance on standard video question answering (VQA) benchmarks (with peak accuracy gains reaching over 20% and 10% respectively). This validates ArrowRL's effectiveness and highlights the critical need for dedicated AoT understanding in LMMs.
Social Aspects · Accountability, Transparency and Interpretability
The growing integration of machine learning (ML) and artificial intelligence (AI) models into high-stakes domains such as healthcare and scientific research calls for models that are not only accurate but also interpretable. Among the existing explainable methods, counterfactual explanations offer interpretability by identifying minimal changes to inputs that would alter a model’s prediction, thus providing deeper insights. However, current counterfactual generation methods suffer from critical limitations, including gradient vanishing, discontinuous latent spaces, and an overreliance on the alignment between learned and true decision boundaries. To overcome these limitations, we propose LeapFactual, a novel counterfactual explanation algorithm based on conditional flow matching. LeapFactual generates reliable and informative counterfactuals, even when true and learned decision boundaries diverge. LeapFactual is not limited to models with differentiable loss functions. It can even handle human-in-the-loop systems, expanding the scope of counterfactual explanations to domains that require the participation of human annotators, such as citizen science. We provide extensive experiments on benchmark and real-world datasets highlighting that LeapFactual generates accurate and in-distribution counterfactual explanations that offer actionable insights. We observe, for instance, that our reliable counterfactual samples with labels aligning to ground truth can be beneficially used as new training data to enhance the model. The proposed method is diversely applicable and enhances scientific knowledge discovery as well as non-expert interpretability.
Data-centric AI · Data-centric AI methods and tools
Text-to-Visualization (Text2VIS) enables users to create visualizations from natural language queries, making data insights more accessible. However, Text2VIS faces challenges in interpreting ambiguous queries, as users often express their visualization needs in imprecise language. To address this challenge, we introduce nBench 2.0, a new benchmark designed to evaluate Text2VIS systems in scenarios involving ambiguous queries. nvBench 2.0 includes 7,878 natural language queries and 24,076 corresponding visualizations, derived from 780 tables across 153 domains. It is built using a controlled ambiguity-injection pipeline that generates ambiguous queries through a reverse-generation workflow. By starting with unambiguous seed visualizations and selectively injecting ambiguities, the pipeline yields multiple valid interpretations for each query, with each ambiguous query traceable to its corresponding visualization through step-wise reasoning paths.We evaluate various Large Language Models (LLMs) on their ability to perform ambiguous Text2VIS tasks using nBench 2.0. We also propose Step-Text2Vis, an LLM-based model trained on nvBench 2.0, which enhances performance in ambiguous scenarios through step-wise preference optimization. Our results show that Step-Text2Vis outperforms all baselines, setting a new state-of-the-art for ambiguous Text2VIS tasks. Our source code and data are available at https://nvbench2.github.io/
General Machine Learning · Representation Learning
Graph embeddings play a critical role in graph representation learning, allowing machine learning models to explore and interpret graph-structured data. However, existing methods often rely on opaque, high-dimensional embeddings, limiting interpretability and practical visualization. In this work, we introduce Topological Evolution Rate (TopER), a novel, low-dimensional embedding approach grounded in topological data analysis. TopER simplifies a key topological approach, Persistent Homology, by calculating the evolution rate of graph substructures, resulting in intuitive and interpretable visualizations of graph data. This approach not only enhances the exploration of graph datasets but also delivers competitive performance in graph clustering and classification tasks. Our TopER-based models achieve or surpass state-of-the-art results across molecular, biological, and social network datasets in tasks such as classification, clustering, and visualization.
Applications · Everything Else
Traffic signal control (TSC) is a core challenge in urban mobility, where real-time decisions must balance efficiency and safety. Existing methods—ranging from rule-based heuristics to reinforcement learning (RL)—often struggle to generalize to complex, dynamic, and safety-critical scenarios. We introduce \textbf{VLMLight}, a novel TSC framework that integrates vision-language meta-control with dual-branch reasoning. At the core of VLMLight is the first image-based traffic simulator that enables multi-view visual perception at intersections, allowing policies to reason over rich cues such as vehicle type, motion, and spatial density. A large language model (LLM) serves as a safety-prioritized meta-controller, selecting between a fast RL policy for routine traffic and a structured reasoning branch for critical cases. In the latter, multiple LLM agents collaborate to assess traffic phases, prioritize emergency vehicles, and verify rule compliance. Experiments show that VLMLight reduces waiting times for emergency vehicles by up to 65% over RL-only systems, while preserving real-time performance in standard conditions with less than 1% degradation. VLMLight offers a scalable, interpretable, and safety-aware solution for next-generation traffic signal control.
Applications · Neuroscience, Cognitive Science
Computation in recurrent networks of neurons has been hypothesized to occur at the level of low-dimensional latent dynamics, both in artificial systems and in the brain. This hypothesis seems at odds with evidence from large-scale neuronal recordings in mice showing that neuronal population activity is high-dimensional. To demonstrate that low-dimensional latent dynamics and high-dimensional activity can be two sides of the same coin, we present an analytically solvable recurrent neural network (RNN) model whose dynamics can be exactly reduced to a low-dimensional dynamical system, but generates an activity manifold that has a high linear embedding dimension. This raises the question: Do low-dimensional latents explain the high-dimensional activity observed in mouse visual cortex? Spectral theory tells us that the covariance eigenspectrum alone does not allow us to recover the dimensionality of the latents, which can be low or high, when neurons are nonlinear. To address this indeterminacy, we develop Neural Cross-Encoder (NCE), an interpretable, nonlinear latent variable modeling method for neuronal recordings, and find that high-dimensional neuronal responses to drifting gratings and spontaneous activity in visual cortex can be reduced to low-dimensional latents, while the responses to natural images cannot. We conclude that the high-dimensional activity measured in certain conditions, such as in the absence of a stimulus, is explained by low-dimensional latents that are nonlinearly processed by individual neurons.
Computer Vision · Vision Models & Multimodal
This study identifies that visual-related functional decoding is distributed across different decoder layers in Multimodal Large Language Models (MLLMs). Typically, each function, such as counting, grounding, or OCR recognition, narrows down to two or three layers, which we define as Vision Function Layers (VFL). Additionally, the depth and its order of different VFLs exhibits a consistent pattern across different MLLMs, which is well-aligned with human behaviors (e.g., recognition occurs first, followed by counting, and then grounding). These findings are derived from Visual Token Swapping, our novel analytical framework that modifies targeted KV cache entries to precisely elucidate layer-specific functions during decoding. Furthermore, these insights offer substantial utility in tailoring MLLMs for real-world downstream applications. For instance, when LoRA training is selectively applied to VFLs whose functions align with the training data, VFL-LoRA not only outperform full-LoRA but also prevent out-of-domain function forgetting. Moreover, by analyzing the performance differential on training data when particular VFLs are ablated, VFL-select automatically classifies data by function, enabling highly efficient data selection to directly bolster corresponding capabilities. Consequently, VFL-select surpasses human experts in data selection, and achieves 98% of full-data performance with only 20% of the original dataset. This study delivers deeper comprehension of MLLM visual processing, fostering the creation of more efficient, interpretable, and robust models.
Computer Vision · Image and Video Generation
Text-to-image (T2I) models are capable of generating visually impressive images, yet they often fail to accurately capture specific attributes in user prompts, such as the correct number of objects with the specified colors. The diversity of such errors underscores the need for a hierarchical evaluation framework that can compare prompt adherence abilities of different image generation models. Simultaneously, benchmarks of vision language models (VLMs) have not kept pace with the complexity of scenes that VLMs are used to annotate. In this work, we propose a structured methodology for jointly evaluating T2I models and VLMs by testing whether VLMs can identify 27 specific failure modes in the images generated by T2I models conditioned on challenging prompts. Our second contribution is a dataset of prompts and images generated by 5 T2I models (Flux, SD3-Medium, SD3-Large, SD3.5-Medium, SD3.5-Large) and the corresponding annotations from VLMs (Molmo, InternVL3, Pixtral) annotated by an LLM (Llama3) to test whether VLMs correctly identify the failure mode in a generated image. By analyzing failure modes on a curated set of prompts, we reveal systematic errors in attribute fidelity and object representation. Our findings suggest that current metrics are insufficient to capture these nuanced errors, highlighting the importance of targeted benchmarks for advancing generative model reliability and interpretability.
Applications · Genetics, Cell Biology, etc
Recent advances in computational pathology have led to the emergence of numerous foundation models. These models typically rely on general-purpose encoders with multi-instance learning for whole slide image (WSI) classification or apply multimodal approaches to generate reports directly from images. However, these models cannot emulate the diagnostic approach of pathologists, who systematically examine slides at low magnification to obtain an overview before progressively zooming in on suspicious regions to formulate comprehensive diagnoses. Instead, existing models directly output final diagnoses without revealing the underlying reasoning process. To address this gap, we introduce CPathAgent, an innovative agent-based approach that mimics pathologists' diagnostic workflow by autonomously navigating across WSI through zoom-in/out and move operations based on observed visual features, thereby generating substantially more transparent and interpretable diagnostic summaries. To achieve this, we develop a multi-stage training strategy that unifies patch-level, region-level, and WSI-level capabilities within a single model, which is essential for replicating how pathologists understand and reason across diverse image scales. Additionally, we construct PathMMU-HR², the first expert-validated benchmark for large region analysis. This represents a critical intermediate scale between patches and whole slides, reflecting a key clinical reality where pathologists typically examine several key large regions rather than entire slides at once. Extensive experiments demonstrate that CPathAgent consistently outperforms existing approaches across benchmarks at three different image scales, validating the effectiveness of our agent-based diagnostic approach and highlighting a promising direction for computational pathology.
Social Aspects · Accountability, Transparency and Interpretability
Sparse Autoencoders (SAEs) have recently gained attention as a means to improve the interpretability and steerability of Large Language Models (LLMs), both of which are essential for AI safety. In this work, we extend the application of SAEs to Vision-Language Models (VLMs), such as CLIP, and introduce a comprehensive framework for evaluating monosemanticity at the neuron-level in visual representations. To ensure that our evaluation aligns with human perception, we propose a benchmark derived from a large-scale user study. Our experimental results reveal that SAEs trained on VLMs significantly enhance the monosemanticity of individual neurons, with sparsity and wide latents being the most influential factors. Further, we demonstrate that applying SAE interventions on CLIP's vision encoder directly steers multimodal LLM outputs (e.g., LLaVA), without any modifications to the underlying language model. These findings emphasize the practicality and efficacy of SAEs as an unsupervised tool for enhancing both interpretability and control of VLMs. Code and benchmark data are available at https://github.com/ExplainableML/sae-for-vlm.
Computer Vision · Vision Models & Multimodal
Recent advancements in multimodal large language models (MLLMs) have focused on integrating multiple modalities, yet their ability to simultaneously process and reason across different inputs remains underexplored. We introduce OmniBench, a novel benchmark designed to evaluate models’ ability to recognize, interpret, and reason across visual, acoustic, and textual inputs simultaneously. We define language models capable of such tri-modal processing as omni-language models (OLMs). OmniBench features high-quality human annotations that require integrated understanding across all modalities. Our evaluation reveals that: i) open-source OLMs show significant limitations in instruction-following and reasoning in tri-modal contexts; and ii) most baseline models perform poorly (below 50% accuracy) even with textual alternatives to image/audio inputs. To address these limitations, we develop OmniInstruct, an 96K-sample instruction tuning dataset for training OLMs. We advocate for developing more robust tri-modal integration techniques and training strategies to enhance OLM performance. Codes and data could be found at https://m-a-p.ai/OmniBench/.
Computer Vision · Vision Models & Multimodal
Large Vision-Language Models (LVLMs) have achieved significant success in multimodal tasks, with multimodal chain-of-thought (MCoT) further enhancing performance and interpretability. Recent MCoT methods fall into two categories: (i) Textual-MCoT (T-MCoT), which takes multimodal input and produces textual output; and (ii) Interleaved-MCoT (I-MCoT), which generates interleaved image-text outputs. Despite advances in both approaches, the mechanisms driving these improvements are not fully understood. To fill this gap, we first reveal that MCoT boosts LVLMs by incorporating $\textit{visual thoughts}$, which convey image information to the reasoning process regardless of the MCoT format, depending only on clarity and conciseness of expression. Furthermore, to explore visual thoughts systematically, we define four distinct forms of visual thought expressions and analyze them comprehensively. Our findings demonstrate that these forms differ in clarity and conciseness, yielding varying levels of MCoT improvement. Additionally, we explore the internal nature of visual thoughts, finding that visual thoughts serve as intermediaries between the input image and reasoning to deeper transformer layers, enabling more advanced visual information transmission. We hope that the visual thoughts can inspire further breakthroughs for future MCoT research.