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Miscellaneous Aspects of Machine Learning · Representation Learning

Dehao Yuan, Furong Huang, Cornelia Fermuller, Yiannis Aloimonos

We propose Hyper-Dimensional Function Encoding (HDFE). Given samples of a continuous object (e.g. a function), HDFE produces an explicit vector representation of the given object, invariant to the sample distribution and density. Sample distribution and density invariance enables HDFE to consistently encode continuous objects regardless of their sampling, and therefore allows neural networks to receive continuous objects as inputs for machine learning tasks, such as classification and regression. Besides, HDFE does not require any training and is proved to map the object into an organized embedding space, which facilitates the training of the downstream tasks. In addition, the encoding is decodable, which enables neural networks to regress continuous objects by regressing their encodings. Therefore, HDFE serves as an interface for processing continuous objects. We apply HDFE to function-to-function mapping, where vanilla HDFE achieves competitive performance with the state-of-the-art algorithm. We apply HDFE to point cloud surface normal estimation, where a simple replacement from PointNet to HDFE leads to 12\% and 15\% error reductions in two benchmarks. In addition, by integrating HDFE into the PointNet-based SOTA network, we improve the SOTA baseline by 2.5\% and 1.7\% on the same benchmarks.

Applications

Zitao Song, Wendi Ren, Shuang Li

Excitatory point processes (i.e., event flows) occurring over dynamic graphs (i.e., evolving topologies) provide a fine-grained model to capture how discrete events may spread over time and space. How to effectively steer the event flows by modifying the dynamic graph structures presents an interesting problem, motivated by curbing the spread of infectious diseases through strategically locking down cities to mitigating traffic congestion via traffic light optimization. To address the intricacies of planning and overcome the high dimensionality inherent to such decision-making problems, we design an Amortized Network Interventions (ANI) framework, allowing for the pooling of optimal policies from history and other contexts while ensuring a permutation equivalent property. This property enables efficient knowledge transfer and sharing across diverse contexts. Each task is solved by an H-step lookahead model-based reinforcement learning, where neural ODEs are introduced to model the dynamics of the excitatory point processes. Instead of simulating rollouts from the dynamics model, we derive an analytical mean-field approximation for the event flows given the dynamics, making the online planning more efficiently solvable. We empirically illustrate that this ANI approach substantially enhances policy learning for unseen dynamics and exhibits promising outcomes in steering event flows through network intervention using synthetic and real COVID datasets.

Miscellaneous Aspects of Machine Learning · Causality

Loka Li, Ignavier Ng, Gongxu Luo, Biwei Huang, Guangyi Chen, Tongliang Liu, Bin Gu, Kun Zhang

Conventional causal discovery methods rely on centralized data, which is inconsistent with the decentralized nature of data in many real-world situations. This discrepancy has motivated the development of federated causal discovery (FCD) approaches. However, existing FCD methods may be limited by their potentially restrictive assumptions of identifiable functional causal models or homogeneous data distributions, narrowing their applicability in diverse scenarios. In this paper, we propose a novel FCD method attempting to accommodate arbitrary causal models and heterogeneous data. We first utilize a surrogate variable corresponding to the client index to account for the data heterogeneity across different clients. We then develop a federated conditional independence test (FCIT) for causal skeleton discovery and establish a federated independent change principle (FICP) to determine causal directions. These approaches involve constructing summary statistics as a proxy of the raw data to protect data privacy. Owing to the nonparametric properties, FCIT and FICP make no assumption about particular functional forms, thereby facilitating the handling of arbitrary causal models. We conduct extensive experiments on synthetic and real datasets to show the efficacy of our method. The code is available at https://github.com/lokali/FedCDH.git.

Miscellaneous Aspects of Machine Learning · Causality

HAOYUE DAI, Ignavier Ng, Gongxu Luo, Peter Spirtes, Petar Stojanov, Kun Zhang

Gene regulatory network inference (GRNI) is a challenging problem, particularly owing to the presence of zeros in single-cell RNA sequencing data: some are biological zeros representing no gene expression, while some others are technical zeros arising from the sequencing procedure (aka dropouts), which may bias GRNI by distorting the joint distribution of the measured gene expressions. Existing approaches typically handle dropout error via imputation, which may introduce spurious relations as the true joint distribution is generally unidentifiable. To tackle this issue, we introduce a causal graphical model to characterize the dropout mechanism, namely, Causal Dropout Model. We provide a simple yet effective theoretical result: interestingly, the conditional independence (CI) relations in the data with dropouts, after deleting the samples with zero values (regardless if technical or not) for the conditioned variables, are asymptotically identical to the CI relations in the original data without dropouts. This particular test-wise deletion procedure, in which we perform CI tests on the samples without zeros for the conditioned variables, can be seamlessly integrated with existing structure learning approaches including constraint-based and greedy score-based methods, thus giving rise to a principled framework for GRNI in the presence of dropouts. We further show that the causal dropout model can be validated from data, and many existing statistical models to handle dropouts fit into our model as specific parametric instances. Empirical evaluation on synthetic, curated, and real-world experimental transcriptomic data comprehensively demonstrate the efficacy of our method.

Social Aspects · Accountability, Transparency and Interpretability

Avni Kothari, Bogdan Kulynych, Tsui-Wei Weng, Berk Ustun

Machine learning models are often used to decide who receives a loan, a job interview, or a public benefit. Models in such settings use features without considering their *actionability*. As a result, they can assign predictions that are \emph{fixed} -- meaning that individuals who are denied loans and interviews are, in fact, *precluded from access* to credit and employment. In this work, we introduce a procedure called *recourse verification* to test if a model assigns fixed predictions to its decision subjects. We propose a model-agnostic approach for verification with *reachable sets* -- i.e., the set of all points that a person can reach through their actions in feature space. We develop methods to construct reachable sets for discrete feature spaces, which can certify the responsiveness of *any model* by simply querying its predictions. We conduct a comprehensive empirical study on the infeasibility of recourse on datasets from consumer finance. Our results highlight how models can inadvertently preclude access by assigning fixed predictions and underscore the need to account for actionability in model development.

Deep Learning · Large Language Models

Xiao Zhang, Ji Wu

Finetuning language models on domain-specific corpus is a common approach to enhance their domain knowledge and capability. While improving performance on domain tasks, it often brings a side-effect of forgetting of the model's general abilities. In this study, we analyze the effects of finetuning on language models by dissecting its impacts on the modeling of topic, style, and factual knowledge in text. Our method uses instruction-following LLMs such as ChatGPT to auto-generate controlled-variable text examples which we use to probe the model. Our findings reveal that finetuning results in significant shifts in the language model's topic and style priors, while actual knowledge learning only contributes to a small fraction of the total probability change. Analysis shows that the adaptation of topic and style priors behave akin to learning simple features: they are learned rapidly and require little model capacity. They are also learned independently and primarily at the beginning of a text sequence. In contrast, factual knowledge is learned stably but slowly and requires significant model capacity to learn. The research offers insights and understanding into the finer dynamics of learning and forgetting in language models, and can potentially inform future research on improving domain adaptation and addressing the challenges of forgetting in continual learning of language models.

Miscellaneous Aspects of Machine Learning · Representation Learning

Ilmin Kang, HyounYoung Bae, Kangil Kim

Most neural networks for classification primarily learn features differentiated by input-domain related information such as visual similarity of objects in an image. While this focus is natural behavior, it can inadvertently introduce an inductive bias that conflicts with unseen relations in an implicit output-domain determined by human labeling based on their own world knowledge. Such conflicts can limit generalization of models by potential dominance of the input-domain focused bias in inference.To overcome this limitation without external resources, we introduce Output-Domain focused Biasing (ODB) training strategy that constructs inductive biases on features differentiated by only output labels. It has four steps: 1) it learns intermediate latent object features in an unsupervised manner; 2) it decouples their visual dependencies by assigning new independent embedding parameters; 3) it captures structured features optimized for the original classification task; and 4) it integrates the structured features with the original visual features for the final prediction.We implement the ODB on a vision transformer architecture, and achieved significant improvements on image classification benchmarks. This paper offers a straightforward and effective method to obtain and utilize output-domain focused inductive bias for classification mapping two different domains.

Miscellaneous Aspects of Machine Learning · Representation Learning

Duy-Kien Nguyen, Yanghao Li, Vaibhav Aggarwal, Martin R. Oswald, Alexander Kirillov, Cees G Snoek, Xinlei Chen

In this work, we explore regions as a potential visual analogue of words for self-supervised image representation learning. Inspired by Masked Autoencoding (MAE), a generative pre-training baseline, we propose masked region autoencoding to learn from groups of pixels or regions. Specifically, we design an architecture which efficiently addresses the one-to-many mapping between images and regions, while being highly effective especially with high-quality regions. When integrated with MAE, our approach (R-MAE) demonstrates consistent improvements across various pre-training datasets and downstream detection and segmentation benchmarks, with negligible computational overheads. Beyond the quantitative evaluation, our analysis indicates the models pre-trained with masked region autoencoding unlock the potential for interactive segmentation. The code is provided at https://github.com/facebookresearch/r-mae.

Theory · Game Theory

Brian Zhang, Gabriele Farina, Tuomas Sandholm

A recent paper by Farina and Pipis (2023) established the existence of uncoupled no-linear-swap regret dynamics with polynomial-time iterations in extensive-form games. The equilibrium points reached by these dynamics, known as linear correlated equilibria, are currently the tightest known relaxation of correlated equilibrium that can be learned in polynomial time in any finite extensive-form game. However, their properties remain vastly unexplored, and their computation is onerous. In this paper, we provide several contributions shedding light on the fundamental nature of linear-swap regret. First, we show a connection between linear deviations and a generalization of communication deviations in which the player can make queries to a ``mediator'' who replies with action recommendations, and, critically, the player is not constrained to match the timing of the game as would be the case for communication deviations. We coin this latter set the untimed communication (UTC) deviations. We show that the UTC deviations coincide precisely with the linear deviations, and therefore that any player minimizing UTC regret also minimizes linear-swap regret. We then leverage this connection to develop state-of-the-art no-regret algorithms for computing linear correlated equilibria, both in theory and in practice. In theory, our algorithms achieve polynomially better per-iteration runtimes; in practice, our algorithms represent the state of the art by several orders of magnitude.

Deep Learning · Other Representation Learning

Yizhi Li, Ruibin Yuan, Ge Zhang, Yinghao MA, Xingran Chen, Hanzhi Yin, Chenghao Xiao, Chenghua Lin, Anton Ragni, Emmanouil Benetos 等

Self-supervised learning (SSL) has recently emerged as a promising paradigm for training generalisable models on large-scale data in the fields of vision, text, and speech. Although SSL has been proven effective in speech and audio, its application to music audio has yet to be thoroughly explored. This is partially due to the distinctive challenges associated with modelling musical knowledge, particularly tonal and pitched characteristics of music.To address this research gap, we propose an acoustic **M**usic und**ER**standing model with large-scale self-supervised **T**raining (**MERT**), which incorporates teacher models to provide pseudo labels in the masked language modelling (MLM) style acoustic pre-training.In our exploration, we identified an effective combination of teacher models, which outperforms conventional speech and audio approaches in terms of performance. This combination includes an acoustic teacher based on Residual Vector Quantization - Variational AutoEncoder (RVQ-VAE) and a musical teacher based on the Constant-Q Transform (CQT). Furthermore, we explore a wide range of settings to overcome the instability in acoustic language model pre-training, which allows our designed paradigm to scale from 95M to 330M parameters.Experimental results indicate that our model can generalise and perform well on 14 music understanding tasks and attain state-of-the-art (SOTA) overall scores.

Miscellaneous Aspects of Machine Learning · Representation Learning

Ryo Ueda, TADAHIRO TANIGUCHI

As a sub-discipline of evolutionary and computational linguistics, emergent communication (EC) studies communication protocols, called emergent languages, arising in simulations where agents communicate. A key goal of EC is to give rise to languages that share statistical properties with natural languages. In this paper, we reinterpret Lewis's signaling game, a frequently used setting in EC, as beta-VAE and reformulate its objective function as ELBO. Consequently, we clarify the existence of prior distributions of emergent languages and show that the choice of the priors can influence their statistical properties. Specifically, we address the properties of word lengths and segmentation, known as Zipf's law of abbreviation (ZLA) and Harris's articulation scheme (HAS), respectively. It has been reported that the emergent languages do not follow them when using the conventional objective. We experimentally demonstrate that by selecting an appropriate prior distribution, more natural segments emerge, while suggesting that the conventional one prevents the languages from following ZLA and HAS.

Deep Learning · Graph Neural Networks

Kiarash Shamsi, Farimah Poursafaei, Shenyang(Andy) Huang, Tran Gia Bao Ngo, Baris Coskunuzer, Cuneyt Akcora

Many real-world networks evolve over time, and predicting the evolution of such networks remains a challenging task. Graph Neural Networks (GNNs) have shown empirical success for learning on static graphs, but they lack the ability to effectively learn from nodes and edges with different timestamps. Consequently, the prediction of future properties in temporal graphs remains a relatively under-explored area.In this paper, we aim to bridge this gap by introducing a principled framework, named GraphPulse. The framework combines two important techniques for the analysis of temporal graphs within a Newtonian framework. First, we employ the Mapper method, a key tool in topological data analysis, to extract essential clustering information from graph nodes. Next, we harness the sequential modeling capabilities of Recurrent Neural Networks (RNNs) for temporal reasoning regarding the graph's evolution. Through extensive experimentation, we demonstrate that our model enhances the ROC-AUC metric by 10.2\% in comparison to the top-performing state-of-the-art method across various temporal networks. We provide the implementation of GraphPulse at https://github.com/kiarashamsi/GraphPulse.

Optimization · Learning for Optimization

Yufei Kuang, Jie Wang, Haoyang Liu, Fangzhou Zhu, Xijun Li, Jia Zeng, Jianye HAO, Bin Li, Feng Wu

Machine learning (ML) has been shown to successfully accelerate solving NP-hard combinatorial optimization (CO) problems under the branch and bound framework. However, the high training and inference cost and limited interpretability of ML approaches severely limit their wide application to modern exact CO solvers. In contrast, human-designed policies---though widely integrated in modern CO solvers due to their compactness and reliability---can not capture data-driven patterns for higher performance. To combine the advantages of the two paradigms, we propose the first symbolic discovery framework---namely, deep symbolic discovery for exact combinatorial optimization solver (Symb4CO)---to learn high-performance symbolic policies on the branching task. Specifically, we show the potential existence of small symbolic policies empirically, employ a large neural network to search in the high-dimensional discrete space, and compile the learned symbolic policies directly for fast deployment. Experiments show that the Symb4CO learned purely CPU-based policies consistently achieve *comparable* performance to previous GPU-based state-of-the-art approaches. Furthermore, the appealing features of Symb4CO include its high training (*ten training instances*) and inference (*one CPU core*) efficiency and good interpretability (*one-line expressions*), making it simple and reliable for deployment. The results show encouraging potential for the *wide* deployment of ML to modern CO solvers.

Deep Learning · Graph Neural Networks

Juncheng Liu, Bryan Hooi, Kenji Kawaguchi, Yiwei Wang, Chaosheng Dong, Xiaokui Xiao

Graph Neural Networks (GNNs) have become the de facto standard for modeling graph-structured data in various applications. Among them, implicit GNNs have shown a superior ability to effectively capture long-range dependencies in underlying graphs. However, implicit GNNs tend to be computationally expensive and have high memory usage, due to 1) their use of full-batch training; and 2) they require a large number of iterations to solve a fixed-point equation. These compromise the scalability and efficiency of implicit GNNs especially on large graphs. In this paper, we aim to answer the question: how can we efficiently train implicit GNNs to provide effective predictions on large graphs? We propose a new scalable and effective implicit GNN (SEIGNN) with a mini-batch training method and a stochastic solver, which can be trained efficiently on large graphs. Specifically, SEIGNN can more effectively incorporate global and long-range information by introducing coarse-level nodes in the mini-batch training method. It also achieves reduced training time by obtaining unbiased approximate solutions with fewer iterations in the proposed solver. Comprehensive experiments on various large graphs demonstrate that SEIGNN outperforms baselines and achieves higher accuracy with less training time compared with existing implicit GNNs.

Deep Learning · Theory

Daiki Chijiwa

Training deep neural networks (DNNs) is computationally expensive, which is problematic especially when performing duplicated or similar training runs in model ensemble or fine-tuning pre-trained models, for example. Once we have trained one DNN on some dataset, we have its learning trajectory (i.e., a sequence of intermediate parameters during training) which may potentially contain useful information for learning the dataset. However, there has been no attempt to utilize such information of a given learning trajectory for another training. In this paper, we formulate the problem of "transferring" a given learning trajectory from one initial parameter to another one (named *learning transfer problem*) and derive the first algorithm to approximately solve it by matching gradients successively along the trajectory via permutation symmetry. We empirically show that the transferred parameters achieve non-trivial accuracy before any direct training, and can be trained significantly faster than training from scratch.

Reinforcement Learning · Deep RL

Seohong Park, Oleh Rybkin, Sergey Levine

Unsupervised pre-training strategies have proven to be highly effective in natural language processing and computer vision. Likewise, unsupervised reinforcement learning (RL) holds the promise of discovering a variety of potentially useful behaviors that can accelerate the learning of a wide array of downstream tasks. Previous unsupervised RL approaches have mainly focused on pure exploration and mutual information skill learning. However, despite the previous attempts, making unsupervised RL truly scalable still remains a major open challenge: pure exploration approaches might struggle in complex environments with large state spaces, where covering every possible transition is infeasible, and mutual information skill learning approaches might completely fail to explore the environment due to the lack of incentives. To make unsupervised RL scalable to complex, high-dimensional environments, we propose a novel unsupervised RL objective, which we call Metric-Aware Abstraction (METRA). Our main idea is, instead of directly covering the entire state space, to only cover a compact latent space $\mathcal{Z}$ that is metrically connected to the state space $\mathcal{S}$ by temporal distances. By learning to move in every direction in the latent space, METRA obtains a tractable set of diverse behaviors that approximately cover the state space, being scalable to high-dimensional environments. Through our experiments in five locomotion and manipulation environments, we demonstrate that METRA can discover a variety of useful behaviors even in complex, pixel-based environments, being the first unsupervised RL method that discovers diverse locomotion behaviors in pixel-based Quadruped and Humanoid. Our code and videos are available at https://seohong.me/projects/metra/

Deep Learning · Generative Models and Autoencoders

Pum Jun Kim, Seojun Kim, Jaejun Yoo

Image generative models have made significant progress in generating realistic and diverse images, supported by comprehensive guidance from various evaluation metrics. However, current video generative models struggle to generate evenshort video clips, with limited tools that provide insights for improvements. Current video evaluation metrics are simple adaptations of image metrics by switching the embeddings with video embedding networks, which may underestimate the unique characteristics of video. Our analysis reveals that the widely used Frechet Video Distance (FVD) has a stronger emphasis on the spatial aspect than the temporal naturalness of video and is inherently constrained by the input size of the embedding networks used, limiting it to 16 frames. Additionally, it demonstrates considerable instability and diverges from human evaluations. To address the limitations, we propose STREAM, a new video evaluation metric uniquely designed to independently evaluate spatial and temporal aspects. This feature allows comprehensive analysis and evaluation of video generative models from various perspectives, unconstrained by video length. We provide analytical and experimental evidence demonstrating that STREAM provides an effective evaluation tool for both visual and temporal quality of videos, offering insights into area of improvement for video generative models. To the best of our knowledge, STREAM is the first evaluation metric that can separately assess the temporal and spatial aspects of videos. Our code is available at https://github.com/pro2nit/STREAM.

Deep Learning · Large Language Models

Archiki Prasad, Elias Stengel-Eskin, Mohit Bansal

An increasing number of vision-language tasks can be handled with little to no training, i.e., in a zero and few-shot manner, by marrying large language models (LLMs) to vision encoders, resulting in large vision-language models (LVLMs). While this has huge upsides, such as not requiring training data or custom architectures, how an input is presented to an LVLM can have a major impact on zero-shot model performance. In particular, inputs phrased in an underspecified way can result in incorrect answers due to factors like missing visual information, complex implicit reasoning, or linguistic ambiguity. Therefore, adding visually-grounded information to the input as a preemptive clarification should improve model performance by reducing underspecification, e.g., by localizing objects and disambiguating references. Similarly, in the VQA setting, changing the way questions are framed can make them easier for models to answer. To this end, we present **Rep**hrase, **A**ugment and **Re**ason (RepARe), a gradient-free framework that extracts salient details about the image using the underlying LVLM as a captioner and reasoner, in order to propose modifications to the original question. We then use the LVLM’s confidence over a generated answer as an unsupervised scoring function to select the rephrased question most likely to improve zero-shot performance. Focusing on three visual question answering tasks, we show that RepARe can result in a 3.85% (absolute) increase in zero-shot accuracy on VQAv2, 6.41%, and 7.94% points increase on A-OKVQA, and VizWiz respectively. Additionally, we find that using gold answers for oracle question candidate selection achieves a substantial gain in VQA accuracy by up to 14.41%. Through extensive analysis, we demonstrate that outputs from RepARe increase syntactic complexity, and effectively utilize vision-language interaction and the frozen LLM.

Deep Learning · Everything Else

Rui Ye, Yaxin Du, Zhenyang Ni, Yanfeng Wang, Siheng Chen

In federated learning (FL), data heterogeneity is one key bottleneck that causes model divergence and limits performance. Addressing this, existing methods often regard data heterogeneity as an inherent property and propose to mitigate its adverse effects by correcting models. In this paper, we seek to break this inherent property by generating data to complement the original dataset to fundamentally mitigate heterogeneity level. As a novel attempt from the perspective of data, we propose federated learning with consensus-oriented generation (FedCOG). FedCOG consists of two key components at the client side: complementary data generation, which generates data extracted from the shared global model to complement the original dataset, and knowledge-distillation-based model training, which distills knowledge from global model to local model based on the generated data to mitigate over-fitting the original heterogeneous dataset.FedCOG has two critical advantages: 1) it can be a plug-and-play module to further improve the performance of most existing FL methods, and 2) it is naturally compatible with standard FL protocols such as Secure Aggregation since it makes no modification in communication process.Extensive experiments on classical and real-world FL datasets show that FedCOG consistently outperforms state-of-the-art methods. Code is available at https://github.com/rui-ye/FedCOG.

Miscellaneous Aspects of Machine Learning · Representation Learning

Haiping Wang, Yuan Liu, Bing WANG, YUJING SUN, Zhen Dong, Wenping Wang, Bisheng Yang

Matching cross-modality features between images and point clouds is a fundamental problem for image-to-point cloud registration. However, due to the modality difference between images and points, it is difficult to learn robust and discriminative cross-modality features by existing metric learning methods for feature matching. Instead of applying metric learning on cross-modality data, we propose to unify the modality between images and point clouds by pretrained large-scale models first, and then establish robust correspondence within the same modality. We show that the intermediate features, called diffusion features, extracted by depth-to-image diffusion models are semantically consistent between images and point clouds, which enables the building of coarse but robust cross-modality correspondences. We further extract geometric features on depth maps produced by the monocular depth estimator. By matching such geometric features, we significantly improve the accuracy of the coarse correspondences produced by diffusion features. Extensive experiments demonstrate that without any task-specific training, direct utilization of both features produces accurate image-to-point cloud registration. On three public indoor and outdoor benchmarks, the proposed method averagely achieves a 20.6 percent improvement in Inlier Ratio, a $3.0\times$ higher Inlier Number, and a 48.6 percent improvement in Registration Recall than existing state-of-the-arts. The code and additional results are available at \url{https://whu-usi3dv.github.io/FreeReg/}.