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Applications · Neuroscience, Cognitive Science

Xinxu Wei, kanhao zhao, Yong Jiao, Hua Xie, Lifang He, Yu Zhang

Effectively utilizing extensive unlabeled high-density EEG data to improve performance in scenarios with limited labeled low-density EEG data presents a significant challenge. In this paper, we address this challenge by formulating it as a graph transfer learning and knowledge distillation problem. We propose a Unified Pre-trained Graph Contrastive Masked Autoencoder Distiller, named EEG-DisGCMAE, to bridge the gap between unlabeled and labeled as well as high- and low-density EEG data. Our approach introduces a novel unified graph self-supervised pre-training paradigm, which seamlessly integrates the graph contrastive pre-training with the graph masked autoencoder pre-training. Furthermore, we propose a graph topology distillation loss function, allowing a lightweight student model trained on low-density data to learn from a teacher model trained on high-density data during pre-training and fine-tuning. This method effectively handles missing electrodes through contrastive distillation. We validate the effectiveness of EEG-DisGCMAE across four classification tasks using two clinical EEG datasets with abundant data.

Deep Learning · Self-Supervised Learning

Jianqing Liang, Zhiqiang Li, Xinkai Wei, Yuan Liu, Zhiqiang Wang

Graph contrastive learning has attracted great interest as a dominant and promising self-supervised representation learning approach in recent years. While existing works follow the basic principle of pulling positive pairs closer and pushing negative pairs far away, they still suffer from several critical problems, such as the underlying semantic disturbance brought by augmentation strategies, the failure of GCN in capturing long-range dependence, rigidness and inefficiency of node sampling techniques. To address these issues, we propose Manifold Learning Inspired Lightweight Graph Contrastive Learning (ML$^2$-GCL), which inherits the merits of both manifold learning and GCN. ML$^2$-GCL avoids the potential risks of semantic disturbance with only one single view. It achieves global nonlinear structure recovery from locally linear fits, which can make up for the defects of GCN. The most amazing advantage is about the lightweight due to its closed-form solution of positive pairs weights and removal of pairwise distances calculation. Theoretical analysis proves the existence of the optimal closed-form solution. Extensive empirical results on various benchmarks and evaluation protocols demonstrate effectiveness and lightweight of ML$^2$-GCL. We release the code at https://github.com/a-hou/ML2-GCL.

Deep Learning · Self-Supervised Learning

Xi Weng, Jianing An, Xudong Ma, Binhang Qi, Jie Luo, Xi Yang, Jin Song Dong, Lei Huang

Self-supervised learning (SSL) methods via joint embedding architectures have proven remarkably effective at capturing semantically rich representations with strong clustering properties, magically in the absence of label supervision. Despite this, few of them have explored leveraging these untapped properties to improve themselves. In this paper, we provide an evidence through various metrics that the encoder's output *encoding* exhibits superior and more stable clustering properties compared to other components. Building on this insight, we propose a novel positive-feedback SSL method, termed **Re**presentation **S**elf-**A**ssignment (ReSA), which leverages the model's clustering properties to promote learning in a self-guided manner. Extensive experiments on standard SSL benchmarks reveal that models pretrained with ReSA outperform other state-of-the-art SSL methods by a significant margin. Finally, we analyze how ReSA facilitates better clustering properties, demonstrating that it effectively enhances clustering performance at both fine-grained and coarse-grained levels, shaping representations that are inherently more structured and semantically meaningful.

Deep Learning · Graph Neural Networks

Yanbei Liu, Chongxu Wang, Zhitao Xiao, Lei Geng, Yanwei Pang, Xiao Wang

Heterogeneous Graph Neural Networks (HGNNs), have demonstrated excellent capabilities in processing heterogeneous information networks. Self-supervised learning on heterogeneous graphs, especially contrastive self-supervised strategy, shows great potential when there are no labels. However, this approach requires the use of carefully designed graph augmentation strategies and the selection of positive and negative samples. Determining the exact level of similarity between sample pairs is non-trivial.To solve this problem, we propose a novel self-supervised Heterogeneous graph neural network with Optimal Transport (HGOT) method which is designed to facilitate self-supervised learning for heterogeneous graphs without graph augmentation strategies. Different from traditional contrastive self-supervised learning, HGOT employs the optimal transport mechanism to relieve the laborious sampling process of positive and negative samples. Specifically, we design an aggregating view (central view) to integrate the semantic information contained in the views represented by different meta-paths (branch views). Then, we introduce an optimal transport plan to identify the transport relationship between the semantics contained in the branch view and the central view. This allows the optimal transport plan between graphs to align with the representations, forcing the encoder to learn node representations that are more similar to the graph space and of higher quality.Extensive experiments on four real-world datasets demonstrate that our proposed HGOT model can achieve state-of-the-art performance on various downstream tasks. In particular, in the node classification task, HGOT achieves an average of more than 6\% improvement in accuracy compared with state-of-the-art methods.

General Machine Learning · Unsupervised and Semi-supervised Learning

Duo Liu, Zhiquan Tan, Linglan Zhao, Zhongqiang Zhang, Xiangzhong Fang, Weiran Huang

Generalized Category Discovery (GCD) aims to identify unlabeled samples by leveraging the base knowledge from labeled ones, where the unlabeled set consists of both base and novel classes. Since clustering methods are time-consuming at inference, parametric-based approaches have become more popular. However, recent parametric-based methods suffer from inferior base discrimination due to unreliable self-supervision. To address this issue, we propose a Reciprocal Learning Framework (RLF) that introduces an auxiliary branch devoted to base classification. During training, the main branch filters the pseudo-base samples to the auxiliary branch. In response, the auxiliary branch provides more reliable soft labels for the main branch, leading to a virtuous cycle. Furthermore, we introduce Class-wise Distribution Regularization (CDR) to mitigate the learning bias towards base classes. CDR essentially increases the prediction confidence of the unlabeled data and boosts the novel class performance. Combined with both components, our proposed method, RLCD, achieves superior performance in all classes with negligible extra computation. Comprehensive experiments across seven GCD datasets validate its superiority.Our codes are available at https://github.com/APORduo/RLCD.

Deep Learning · Self-Supervised Learning

Ziyang Wu, Jingyuan Zhang, Druv Pai, XuDong Wang, Chandan Singh, Jianwei Yang, Jianfeng Gao, Yi Ma

DINO and DINOv2 are two model families being widely used to learn representations from unlabeled imagery data at large scales. Their learned representations often enable state-of-the-art performance for downstream tasks, such as image classification and segmentation. However, they employ many empirically motivated design choices and their training pipelines are highly complex and unstable --- many hyperparameters need to be carefully tuned to ensure that the representations do not collapse --- which poses considerable difficulty to improving them or adapting them to new domains. In this work, we posit that we can remove most such-motivated idiosyncrasies in the pre-training pipelines, and only need to add an explicit coding rate term in the loss function to avoid collapse of the representations. As a result, we obtain highly simplified variants of the DINO and DINOv2 which we call SimDINO and SimDINOv2, respectively. Remarkably, these simplified models are more robust to different design choices, such as network architecture and hyperparameters, and they learn even higher-quality representations, measured by performance on downstream tasks, offering a Pareto improvement over the corresponding DINO and DINOv2 models. This work highlights the potential of using simplifying design principles to improve the empirical practice of deep learning. Code and model checkpoints are available at https://github.com/RobinWu218/SimDINO.

Deep Learning · Self-Supervised Learning

Xiaoyu Yang, Lijian Xu, Hongsheng Li, Shaoting Zhang

This paper proposes a scalable and straightforward pre-training paradigm for efficient visual conceptual representation called occluded image contrastive learning (OCL). Our OCL approach is simple: we randomly mask patches to generate different views within an image and contrast them among a mini-batch of images. The core idea behind OCL consists of two designs. First, masked tokens have the potential to significantly diminish the conceptual redundancy inherent in images, and create distinct views with substantial fine-grained differences on the semantic concept level instead of the instance level. Second, contrastive learning is adept at extracting high-level semantic conceptual features during the pre-training, circumventing the high-frequency interference and additional costs associated with image reconstruction. Importantly, OCL learns highly semantic conceptual representations efficiently without relying on hand-crafted data augmentations or additional auxiliary modules. Empirically, OCL demonstrates high scalability with Vision Transformers, as the ViT-L/16 can complete pre-training in 133 hours using only 4 A100 GPUs, achieving 85.8\% accuracy in downstream fine-tuning tasks. Code is available at https://github.com/XiaoyuYoung/OCL.

Deep Learning · Foundation Models

Yu Sun, Xinhao Li, Karan Dalal, Jiarui Xu, Arjun Vikram, Genghan Zhang, Yann Dubois, Xinlei Chen, Xiaolong Wang, Sanmi Koyejo 等

Self-attention performs well in long context but has quadratic complexity. Existing RNN layers have linear complexity, but their performance in long context is limited by the expressive power of their hidden states. We present a practical framework for instantiating sequence modeling layers with linear complexity and expressive hidden states. The key idea is to make the hidden state a machine learning model itself, and the update rule a step of self-supervised learning. Since the hidden state is updated by training even on test sequences, our layers are called Test-Time Training (TTT) layers. We consider two instantiations: TTT-Linear and TTT-MLP, whose hidden state is a linear model and a two-layer MLP respectively. We evaluate our instantiations at the scale of 125M to 1.3B parameters, comparing with a strong Transformer and Mamba, a modern RNN. Similar to Transformer, TTT-Linear and TTT-MLP can keep reducing perplexity by conditioning on more tokens, while Mamba cannot after 16k context. TTT-MLP still faces challenges in memory I/O, but shows larger potential in long context, pointing to a promising direction for future research.

Position · Methodology

Patrik Reizinger, Randall Balestriero, David Klindt, Wieland Brendel

Self-Supervised Learning (SSL) powers many current AI systems. As research interest and investment grow, the SSL design space continues to expand. The Platonic view of SSL, following the Platonic Representation Hypothesis (PRH), suggests that despite different methods and engineering approaches, all representations converge to the same Platonic ideal. However, this phenomenon lacks precise theoretical explanation. By synthesizing evidence from Identifiability Theory (IT), we show that the PRH can emerge in SSL. There is a gap between SSL theory and practice: Current IT cannot explain SSL's empirical success, though it has practically relevant insights. Our work formulates a blueprint for SSL research to bridge this gap: we propose expanding IT into what we term Singular Identifiability Theory (SITh), a broader theoretical framework encompassing the entire SSL pipeline. SITh would allow deeper insights into the implicit data assumptions in SSL and advance the field towards learning more interpretable and generalizable representations. We highlight three critical directions for future research: 1) training dynamics and convergence properties of SSL; 2) the impact of finite samples, batch size, and data diversity; and 3) the role of inductive biases in architecture, augmentations, initialization schemes, and optimizers.

Applications · Computer Vision

Wenlong Wan, Weiying Zheng, Tianyi Xiang, Guiqing Li, Shengfeng He

We introduce the task of Audible Action Temporal Localization, which aims to identify the spatio-temporal coordinates of audible movements. Unlike conventional tasks such as action recognition and temporal action localization, which broadly analyze video content, our task focuses on the distinct kinematic dynamics of audible actions. It is based on the premise that key actions are driven by inflectional movements; for example, collisions that produce sound often involve abrupt changes in motion. To capture this, we propose $TA^{2}Net$, a novel architecture that estimates inflectional flow using the second derivative of motion to determine collision timings without relying on audio input. $TA^{2}Net$ also integrates a self-supervised spatial localization strategy during training, combining contrastive learning with spatial analysis. This dual design improves temporal localization accuracy and simultaneously identifies sound sources within video frames. To support this task, we introduce a new benchmark dataset, $Audible623$, derived from Kinetics and UCF101 by removing non-essential vocalization subsets. Extensive experiments confirm the effectiveness of our approach on $Audible623$ and show strong generalizability to other domains, such as repetitive counting and sound source localization. Code and dataset are available at https://github.com/WenlongWan01/Audible623.

Deep Learning · Large Language Models

Yung-Sung Chuang, Benjamin Cohen-Wang, Shannon Shen, Zhaofeng Wu, Hu Xu, Xi Victoria Lin, James Glass, Shang-Wen Li, Scott Yih

We introduce SelfCite, a novel self-supervised approach that aligns LLMs to generate high-quality, fine-grained, sentence-level citations for the statements in their generated responses. Instead of only relying on costly and labor-intensive annotations, SelfCite leverages a reward signal provided by the LLM itself through *context ablation*: If a citation is necessary, removing the cited text from the context should prevent the same response; if sufficient, retaining the cited text alone should preserve the same response. This reward can guide the inference-time best-of-N sampling strategy to improve citation quality significantly, as well as be used in preference optimization to directly fine-tune the models for generating better citations. The effectiveness of SelfCite is demonstrated by increasing citation F1 up to 5.3 points on the LongBench-Cite benchmark across five long-form question answering tasks. The source code is available at https://github.com/facebookresearch/SelfCite.

Deep Learning · Self-Supervised Learning

EMANUELE SANSONE, Tim Lebailly, Tinne Tuytelaars

We present a principled and simplified design of the projector and loss function for non-contrastive self-supervised learning based on hyperdimensional computing. We theoretically demonstrate that this design introduces an inductive bias that encourages representations to be simultaneously decorrelated and clustered, without explicitly enforcing these properties. This bias provably enhances generalization and suffices to avoid known training failure modes, such as representation, dimensional, cluster, and intracluster collapses. We validate our theoretical findings on image datasets, including SVHN, CIFAR-10, CIFAR-100, and ImageNet-100. Our approach effectively combines the strengths of feature decorrelation and cluster-based self-supervised learning methods, overcoming training failure modes while achieving strong generalization in clustering and linear classification tasks.

General Machine Learning · Sequential, Network, and Time Series Modeling

Daoyu Wang, Mingyue Cheng, Zhiding Liu, Qi Liu

Self-supervised learning has garnered increasing attention in time series analysis for benefiting various downstream tasks and reducing reliance on labeled data. Despite its effectiveness, existing methods often struggle to comprehensively capture both long-term dynamic evolution and subtle local patterns in a unified manner. In this work, we propose \textbf{TimeDART}, a novel self-supervised time series pre-training framework that unifies two powerful generative paradigms to learn more transferable representations. Specifically, we first employ a causal Transformer encoder, accompanied by a patch-based embedding strategy, to model the evolving trends from left to right. Building on this global modeling, we further introduce a denoising diffusion process to capture fine-grained local patterns through forward diffusion and reverse denoising. Finally, we optimize the model in an autoregressive manner. As a result, TimeDART effectively accounts for both global and local sequence features in a coherent way.We conduct extensive experiments on public datasets for time series forecasting and classification. The experimental results demonstrate that TimeDART consistently outperforms previous compared methods, validating the effectiveness of our approach.Our code is available at \url{https://github.com/Melmaphother/TimeDART}.

Applications · Health / Medicine

Olga Ovcharenko, Florian Barkmann, Philip Toma, Imant Daunhawer, Julia Vogt, Sebastian Schelter, Valentina Boeva

Self-supervised learning (SSL) has proven to be a powerful approach for extracting biologically meaningful representations from single-cell data. To advance our understanding of SSL methods applied to single-cell data, we present scSSL-Bench, a comprehensive benchmark that evaluates nineteen SSL methods. Our evaluation spans nine datasets and focuses on three common downstream tasks: batch correction, cell type annotation, and missing modality prediction. Furthermore, we systematically assess various data augmentation strategies. Our analysis reveals task-specific trade-offs: the specialized single-cell frameworks, scVI, CLAIRE, and the finetuned scGPT excel at uni-modal batch correction, while generic SSL methods, such as VICReg and SimCLR, demonstrate superior performance in cell typing and multi-modal data integration. Random masking emerges as the most effective augmentation technique across all tasks, surpassing domain-specific augmentations. Notably, our results indicate the need for a specialized single-cell multi-modal data integration framework. scSSL-Bench provides a standardized evaluation platform and concrete recommendations for applying SSL to single-cell analysis, advancing the convergence of deep learning and single-cell genomics.

Applications · Neuroscience, Cognitive Science

Dulhan Jayalath, Gilad Landau, Brendan Shillingford, Mark Woolrich, ʻŌiwi Parker Jones

The past few years have seen remarkable progress in the decoding of speech from brain activity, primarily driven by large single-subject datasets. However, due to individual variation, such as anatomy, and differences in task design and scanning hardware, leveraging data across subjects and datasets remains challenging. In turn, the field has not benefited from the growing number of open neural data repositories to exploit large-scale deep learning. To address this, we develop neuroscience-informed self-supervised objectives, together with an architecture, for learning from heterogeneous brain recordings. Scaling to nearly **400 hours** of MEG data and **900 subjects**, our approach shows generalisation across participants, datasets, tasks, and even to *novel* subjects. It achieves **improvements of 15-27%** over state-of-the-art models and **matches *surgical* decoding performance with *non-invasive* data**. These advances unlock the potential for scaling speech decoding models beyond the current frontier.

General Machine Learning · Unsupervised and Semi-supervised Learning

Jonathan Geuter, Gregor Kornhardt, Ingimar Tomasson, Vaios Laschos

Optimal Transport (OT) problems are a cornerstone of many applications, but solving them is computationally expensive. To address this problem, we propose UNOT (Universal Neural Optimal Transport), a novel framework capable of accurately predicting (entropic) OT distances and plans between discrete measures of variable resolution for a given cost function. UNOT builds on Fourier Neural Operators, a universal class of neural networks that map between function spaces and that are discretization-invariant, which enables our network to process measures of varying sizes. The network is trained adversarially using a second, generating network and a self-supervised bootstrapping loss. We theoretically justify the use of FNOs, prove that our generator is universal, and that minimizing the bootstrapping loss provably minimizes the ground truth loss. Through extensive experiments, we show that our network not only accurately predicts optimal transport distances and plans across a wide range of datasets, but also captures the geometry of the Wasserstein space correctly. Furthermore, we show that our network can be used as a state-of-the-art initialization for the Sinkhorn algorithm, significantly outperforming existing approaches.

Optimization · Discrete and Combinatorial Optimization

Yudong W Xu, Wenhao Li, Scott Sanner, Elias Khalil

We present a Transformer-based framework for Constraint Satisfaction Problems (CSPs). CSPs find use in many applications and thus accelerating their solution with machine learning is of wide interest. Most existing approaches rely on supervised learning from feasible solutions or reinforcement learning, paradigms that require either feasible solutions to these NP-Complete CSPs or large training budgets and a complex expert-designed reward signal. To address these challenges, we propose ConsFormer, a self-supervised framework that leverages a Transformer as a solution refiner. ConsFormer constructs a solution to a CSP iteratively in a process that mimics local search. Instead of using feasible solutions as labeled data, we devise differentiable approximations to the discrete constraints of a CSP to guide model training. Our model is trained to improve random assignments for a single step but is deployed iteratively at test time, circumventing the bottlenecks of supervised and reinforcement learning. Experiments on Sudoku, Graph Coloring, Nurse Rostering, and MAXCUT demonstrate that our method can tackle out-of-distribution CSPs simply through additional iterations.

Deep Learning · Large Language Models

Jinwu Hu, Zitian Zhang, Guohao Chen, Xutao Wen, Chao Shuai, Wei Luo, Bin Xiao, Yuanqing Li, Mingkui Tan

While Large Language Models (LLMs) have exhibited remarkable emergent capabilities through extensive pre-training, they still face critical limitations in generalizing to specialized domains and handling diverse linguistic variations, known as distribution shifts. In this paper, we propose a Test-Time Learning (TTL) paradigm for LLMs, namely TLM, which dynamically adapts LLMs to target domains using only unlabeled test data during testing. Specifically, we first provide empirical evidence and theoretical insights to reveal that more accurate predictions from LLMs can be achieved by minimizing the input perplexity of the unlabeled test data. Based on this insight, we formulate the Test-Time Learning process of LLMs as input perplexity minimization, enabling self-supervised enhancement of LLM performance. Furthermore, we observe that high-perplexity samples tend to be more informative for model optimization. Accordingly, we introduce a Sample Efficient Learning Strategy that actively selects and emphasizes these high-perplexity samples for test-time updates. Lastly, to mitigate catastrophic forgetting and ensure adaptation stability, we adopt Low-Rank Adaptation (LoRA) instead of full-parameter optimization, which allows lightweight model updates while preserving more original knowledge from the model. We introduce the AdaptEval benchmark for TTL and demonstrate through experiments that TLM improves performance by at least 20% compared to original LLMs on domain knowledge adaptation.

Applications · Everything Else

Gabriel Tseng, Anthony Fuller, Marlena Reil, Henry Herzog, Patrick Beukema, Favyen Bastani, James Green, Evan Shelhamer, Hannah Kerner, David Rolnick

We introduce a highly multimodal transformer to represent many remote sensing modalities - multispectral optical, synthetic aperture radar, elevation, weather, pseudo-labels, and more - across space and time. These inputs are useful for diverse remote sensing tasks, such as crop mapping and flood detection. However, learning shared representations of remote sensing data is challenging, given the diversity of relevant data modalities, and because objects of interest vary massively in scale, from small boats (1-2 pixels and fast) to glaciers (thousands of pixels and slow). We present a novel self-supervised learning algorithm that extracts multi-scale features across a flexible set of input modalities through masked modeling. Our dual global and local contrastive losses differ in their targets (deep representations vs. shallow input projections) and masking strategies (structured vs. not). Our Galileo is a single generalist model that outperforms SoTA specialist models for satellite images and pixel time series across eleven benchmarks and multiple tasks.

Deep Learning

Thanh Tran, Viet Hoang Tran, Thanh Chu, Trang Pham, Laurent Ghaoui, Tam Le, Tan Nguyen

Tree-Sliced methods have recently emerged as an alternative to the traditional Sliced Wasserstein (SW) distance, replacing one-dimensional lines with tree-based metric spaces and incorporating a splitting mechanism for projecting measures. This approach enhances the ability to capture the topological structures of integration domains in Sliced Optimal Transport while maintaining low computational costs. Building on this foundation, we propose a novel nonlinear projectional framework for the Tree-Sliced Wasserstein (TSW) distance, substituting the linear projections in earlier versions with general projections, while ensuring the injectivity of the associated Radon Transform and preserving the well-definedness of the resulting metric. By designing appropriate projections, we construct efficient metrics for measures on both Euclidean spaces and spheres. Finally, we validate our proposed metric through extensive numerical experiments for Euclidean and spherical datasets. Applications include gradient flows, self-supervised learning, and generative models, where our methods demonstrate significant improvements over recent SW and TSW variants.