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Deep Learning · Generative Models and Autoencoders

Ahmed Elhag, Yuyang Wang, Joshua Susskind, MIGUEL ANGEL BAUTISTA

We present Manifold Diffusion Fields (MDF), an approach that unlocks learning of diffusion models of data in general non-euclidean geometries. Leveraging insights from spectral geometry analysis, we define an intrinsic coordinate system on the manifold via the eigen-functions of the Laplace-Beltrami Operator. MDF represents functions using an explicit parametrization formed by a set of multiple input-output pairs. Our approach allows to sample continuous functions on manifolds and is invariant with respect to rigid and isometric transformations of the manifold. In addition, we show that MDF generalizes to the case where the training set contains functions on different manifolds. Empirical results on multiple datasets and manifolds including challenging scientific problems like weather prediction or molecular conformation show that MDF can capture distributions of such functions with better diversity and fidelity than previous approaches.

Theory · Reinforcement Learning and Planning

Daniil Tiapkin, Denis Belomestny, Daniele Calandriello, Eric Moulines, Alexey Naumov, Pierre Perrault, Michal Valko, Pierre Ménard

Incorporating expert demonstrations has empirically helped to improve the sample efficiency of reinforcement learning (RL). This paper quantifies theoretically to what extent this extra information reduces RL's sample complexity. In particular, we study the demonstration-regularized reinforcement learning framework that leverages the expert demonstrations by $\mathrm{KL}$-regularization for a policy learned by behavior cloning. Our findings reveal that using $N^{\mathrm{E}}$ expert demonstrations enables the identification of an optimal policy at a sample complexity of order $\widetilde{\mathcal{O}}(\mathrm{Poly}(S,A,H)/(\varepsilon^2 N^{\mathrm{E}}))$ in finite and $\widetilde{\mathcal{O}}(\mathrm{Poly}(d,H)/(\varepsilon^2 N^{\mathrm{E}}))$ in linear Markov decision processes, where $\varepsilon$is the target precision, $H$ the horizon, $A$ the number of action, $S$ the number of states in the finite case and $d$ the dimension of the feature space in the linear case. As a by-product, we provide tight convergence guarantees for the behavior cloning procedure under general assumptions on the policy classes. Additionally, we establish that demonstration-regularized methods are provably efficient for reinforcement learning from human feedback (RLHF). In this respect, we provide theoretical evidence showing the benefits of KL-regularization for RLHF in tabular and linear MDPs. Interestingly, we avoid pessimism injection by employing computationally feasible regularization to handle reward estimation uncertainty, thus setting our approach apart from the prior works.

Deep Learning · Large Language Models

Haoxuan You, Haotian Zhang, Zhe Gan, Xianzhi Du, Bowen Zhang, Zirui Wang, Liangliang Cao, Shih-Fu Chang, Yinfei Yang

We introduce Ferret, a new Multimodal Large Language Model (MLLM) capable of understanding spatial referring of any shape or granularity within an image and accurately grounding open-vocabulary descriptions. To unify referring and grounding in the LLM paradigm, Ferret employs a novel and powerful hybrid region representation that integrates discrete coordinates and continuous features jointly to represent a region in the image. To extract the continuous features of versatile regions, we propose a spatial-aware visual sampler, adept at handling varying sparsity across different shapes. Consequently, Ferret can accept diverse region inputs, such as points, bounding boxes, and free-form shapes. To bolster the desired capability of Ferret, we curate GRIT, a comprehensive refer-and-ground instruction tuning dataset including 1.1M samples that contain rich hierarchical spatial knowledge, with an additional 130K hard negative data to promote model robustness. The resulting model not only achieves superior performance in classical referring and grounding tasks, but also greatly outperforms existing MLLMs in region-based and localization-demanded multimodal chatting. Our evaluations also reveal a significantly improved capability of describing image details and a remarkable alleviation in object hallucination.

Theory · Deep Learning

Jingfeng Wu, Difan Zou, Zixiang Chen, Vladimir Braverman, Quanquan Gu, Peter Bartlett

Transformers pretrained on diverse tasks exhibit remarkable in-context learning (ICL) capabilities, enabling them to solve unseen tasks solely based on input contexts without adjusting model parameters. In this paper, we study ICL in one of its simplest setups: pretraining a single-layer linear attention model for linear regression with a Gaussian prior. We establish a statistical task complexity bound for the attention model pretraining, showing that effective pretraining only requires a small number of independent tasks. Furthermore, we prove that the pretrained model closely matches the Bayes optimal algorithm, i.e., optimally tuned ridge regression, by achieving nearly Bayes optimal risk on unseen tasks under a fixed context length. These theoretical findings complement prior experimental research and shed light on the statistical foundations of ICL.

Applications · Computer Vision

Yang Liu, Muzhi Zhu, Hengtao Li, Hao Chen, Xinlong Wang, Chunhua Shen

Powered by large-scale pre-training, vision foundation models exhibit significant potential in open-world image understanding. However, unlike large language models that excel at directly tackling various language tasks, vision foundation models require a task-specific model structure followed by fine-tuning on specific tasks. In this work, we present $\textbf{Matcher}$, a novel perception paradigm that utilizes off-the-shelf vision foundation models to address various perception tasks. Matcher can segment anything by using an in-context example without training. Additionally, we design three effective components within the Matcher framework to collaborate with these foundation models and unleash their full potential in diverse perception tasks. Matcher demonstrates impressive generalization performance across various segmentation tasks, all without training. For example, it achieves 52.7% mIoU on COCO-20$^i$ with one example, surpassing the state-of-the-art specialist model by 1.6%. In addition, Matcher achieves 33.0% mIoU on the proposed LVIS-92$^i$ for one-shot semantic segmentation, outperforming the state-of-the-art generalist model by 14.4%. Our visualization results further showcase the open-world generality and flexibility of Matcher when applied to images in the wild.

Wanru Zhao, Yihong Chen, Royson Lee, Xinchi Qiu, Yan Gao, Hongxiang Fan, Nic Lane

Pretrained large language models (LLMs) have emerged as a cornerstone in modern natural language processing, with their utility expanding to various applications and languages. However, the fine-tuning of multilingual LLMs, particularly for low-resource languages, is fraught with challenges steming from data-sharing restrictions (the physical border) and from the inherent linguistic differences (the linguistic border). These barriers hinder users of various languages, especially those in low-resource regions, from fully benefiting from the advantages of LLMs.To overcome these challenges, we propose the Federated Prompt Tuning Paradigm for Multilingual Scenarios, which leverages parameter-efficient fine-tuning in a manner that preserves user privacy. We have designed a comprehensive set of experiments and introduced the concept of "language distance" to highlight the several strengths of this paradigm. Even under computational constraints, our method not only bolsters data efficiency but also facilitates mutual enhancements across languages, particularly benefiting low-resource ones. Compared to traditional local crosslingual transfer tuning methods, our approach achieves a 6.9\% higher accuracy, reduces the training parameters by over 99\%, and demonstrates stronger cross-lingual generalization. Such findings underscore the potential of our approach to promote social equality, ensure user privacy, and champion linguistic diversity.

Applications · Chemistry and Drug Discovery

Tuan Le, Julian Cremer, Frank Noe, Djork-Arné Clevert, Kristof T. Schütt

Deep generative diffusion models are a promising avenue for 3D de novo molecular design in materials science and drug discovery.However, their utility is still limited by suboptimal performance on large molecular structures and limited training data.To address this gap, we explore the design space of E(3)-equivariant diffusion models, focusing on previously unexplored areas. Our extensive comparative analysis evaluates the interplay between continuous and discrete state spaces.From this investigation, we present the EQGAT-diff model, which consistently outperforms established models for the QM9 and GEOM-Drugs datasets. Significantly, EQGAT-diff takes continuous atom positions, while chemical elements and bond types are categorical and uses time-dependent loss weighting, substantially increasing training convergence, the quality of generated samples, and inference time. We also showcase that including chemically motivated additional features like hybridization states in the diffusion process enhances the validity of generated molecules. To further strengthen the applicability of diffusion models to limited training data, we investigate the transferability of EQGAT-diff trained on the large PubChem3D dataset with implicit hydrogen atoms to target different data distributions. Fine-tuning EQGAT-diff for just a few iterations shows an efficient distribution shift, further improving performance throughout data sets. Finally, we test our model on the Crossdocked data set for structure-based de novo ligand generation, underlining the importance of our findings showing state-of-the-art performance on Vina docking scores.

Deep Learning

Patrik Okanovic, Roger Waleffe, Vasilis Mageirakos, Konstantinos Nikolakakis, Amin Karbasi, Dionysios Kalogerias, Nezihe Merve Gürel, Theodoros Rekatsinas

Methods for carefully selecting or generating a small set of training data to learn from, i.e., data pruning, coreset selection, and dataset distillation, have been shown to be effective in reducing the ever-increasing cost of training neural networks. Behind this success are rigorously designed, yet expensive, strategies for identifying the most informative training examples out of large datasets. In this work, we revisit these methods to understand if the additional computational costs associated with such strategies are justified from the perspective of time-to-accuracy, which has become a critical efficiency measure of deep neural network training over large datasets. Surprisingly, we find that many of the recently proposed methods underperform what we call Repeated Sampling of Random Subsets (RSRS or RS2), a powerful yet overlooked extension of the standard random baseline that learns from repeatedly sampled data throughout training instead of a fixed random subset. We test RS2 against thirty-two state-of-the-art data pruning and distillation methods across four datasets including ImageNet. Our results demonstrate that RS2 significantly reduces time-to-accuracy, particularly in practical regimes where accuracy, but not runtime, is similar to that of training on full dataset. For example, when training ResNet-18 on ImageNet, with 10\% of the dataset each epoch RS2 reaches an accuracy of 66\% versus 69\% when training with the full dataset. The best competing method achieves only 55\% while training 1.6$\times$ slower than RS2. Beyond the above meta-study, we discuss the theoretical properties of RS2 such as its convergence rate and generalization error. Our primary goal is to highlight that future works that aim to minimize total training cost by using subset selection, need to consider 1) the total computation cost (including preparing the subset) and 2) should aim to outperform a simple extension of random sampling (i.e., RS2).

Deep Learning · Generative Models and Autoencoders

Guan-Horng Liu, Yaron Lipman, Maximilian Nickel, Brian Karrer, Evangelos Theodorou, Ricky T. Q. Chen

Modern distribution matching algorithms for training diffusion or flow models directly prescribe the time evolution of the marginal distributions between two boundary distributions. In this work, we consider a generalized distribution matching setup, where these marginals are only implicitly described as a solution to some task-specific objective function. The problem setup, known as the Generalized Schrödinger Bridge (GSB), appears prevalently in many scientific areas both within and without machine learning. We propose Generalized Schödinger Bridge Matching (GSBM), a new matching algorithm inspired by recent advances, generalizing them beyond kinetic energy minimization and to account for nonlinear state costs. We show that such a generalization can be cast as solving conditional stochastic optimal control, for which efficient variational approximations can be used, and further debiased with the aid of path integral theory. Compared to prior methods for solving GSB problems, our GSBM algorithm always preserves a feasible transport map between the boundary distributions throughout training, thereby enabling stable convergence and significantly improved scalability. We empirically validate our claims on an extensive suite of experimental setups, including crowd navigation, opinion depolarization, LiDAR manifolds, and image domain transfer. Our work brings new algorithmic opportunities for training diffusion models enhanced with task-specific optimality structures.

Miscellaneous Aspects of Machine Learning · Unsupervised and Semi-supervised Learning

Hannah Kniesel, Leon Sick, Tristan Payer, Tim Bergner, Kavitha Shaga Devan, Clarissa Read, Paul Walther, Timo Ropinski, Pedro Hermosilla

Current state-of-the-art methods for object detection rely on annotated bounding boxes of large data sets for training. However, obtaining such annotations is expensive and can require up to hundreds of hours of manual labor. This poses a challenge, especially since such annotations can only be provided by experts, as they require knowledge about the scientific domain. To tackle this challenge, we propose a domain-specific weakly supervised object detection algorithm that only relies on image-level annotations, which are significantly easier to acquire. Our method distills the knowledge of a pre-trained model, on the task of predicting the presence or absence of a virus in an image, to obtain a set of pseudo-labels that can be used to later train a state-of-the-art object detection model. To do so, we use an optimization approach with a shrinking receptive field to extract virus particles directly without specific network architectures. Through a set of extensive studies, we show how the proposed pseudo-labels are easier to obtain, and, more importantly, are able to outperform other existing weak labeling methods, and even ground truth labels, in cases where the time to obtain the annotation is limited.

Theory · Reinforcement Learning and Planning

Wenhan Cao, Wei Pan

Integral reinforcement learning (IntRL) demands the precise computation of the utility function's integral at its policy evaluation (PEV) stage. This is achieved through quadrature rules, which are weighted sums of utility functions evaluated from state samples obtained in discrete time. Our research reveals a critical yet underexplored phenomenon: the choice of the computational method -- in this case, the quadrature rule -- can significantly impact control performance. This impact is traced back to the fact that computational errors introduced in the PEV stage can affect the policy iteration's convergence behavior, which in turn affects the learned controller. To elucidate how computation impacts control, we draw a parallel between IntRL's policy iteration and Newton's method applied to the Hamilton-Jacobi-Bellman equation. In this light, computational error in PEV manifests as an extra error term in each iteration of Newton's method, with its upper bound proportional to the computational error. Further, we demonstrate that when the utility function resides in a reproducing kernel Hilbert space (RKHS), the optimal quadrature is achievable by employing Bayesian quadrature with the RKHS-inducing kernel function. We prove that the local convergence rates for IntRL using the trapezoidal rule and Bayesian quadrature with a Matérn kernel to be $O(N^{-2})$ and $O(N^{-b})$, where $N$ is the number of evenly-spaced samples and $b$ is the Matérn kernel's smoothness parameter. These theoretical findings are finally validated by two canonical control tasks.

Applications · Robotics

Heng Dong, Junyu Zhang, Chongjie Zhang

Multi-cellular robot design aims to create robots comprised of numerous cells that can be efficiently controlled to perform diverse tasks. Previous research has demonstrated the ability to generate robots for various tasks, but these approaches often optimize robots directly in the vast design space, resulting in robots with complicated morphologies that are hard to control. In response, this paper presents a novel coarse-to-fine method for designing multi-cellular robots. Initially, this strategy seeks optimal coarse-grained robots and progressively refines them. To mitigate the challenge of determining the precise refinement juncture during the coarse-to-fine transition, we introduce the Hyperbolic Embeddings for Robot Design (HERD) framework. HERD unifies robots of various granularity within a shared hyperbolic space and leverages a refined Cross-Entropy Method for optimization. This framework enables our method to autonomously identify areas of exploration in hyperbolic space and concentrate on regions demonstrating promise. Finally, the extensive empirical studies on various challenging tasks sourced from EvoGym show our approach's superior efficiency and generalization capability.

Theory · Reinforcement Learning and Planning

DINGYUAN SHI, Yongxin Tong, Zimu Zhou, Ke Xu, Zheng Wang, Jieping Ye

Path planning underpins various applications such as transportation, logistics, and robotics.Conventionally, path planning is formulated with explicit optimization objectives such as distance or time.However, real-world data reveals that user intentions are hard-to-model, suggesting a need for data-driven path planning that implicitly incorporates the complex user intentions.In this paper, we propose GDP, a diffusion-based model for end-to-end data-driven path planning.It effectively learns path patterns via a novel diffusion process that incorporates constraints from road networks, and plans paths as conditional path generation given the origin and destination as prior evidence.GDP is the first solution that bypasses the traditional search-based frameworks, a long-standing performance bottleneck in path planning.We validate the efficacy of GDP on two real-world datasets.Our GDP beats strong baselines by 14.2% ~ 43.5% and achieves state-of-the-art performances.

Yeming Wen, Swarat Chaudhuri

Low-Rank Adaptation (LoRA) has recently gained attention for fine-tuning foundation models by incorporating trainable low-rank matrices, thereby reducing the number of trainable parameters. While \lora/ offers numerous advantages, its applicability for real-time serving to a diverse and global user base is constrained by its incapability to handle multiple task-specific adapters efficiently. This imposes a performance bottleneck in scenarios requiring personalized, task-specific adaptations for each incoming request.To address this, we introduce FLoRA (Fast LoRA), a framework in which each input example in a minibatch can be associated with its unique low-rank adaptation weights, allowing for efficient batching of heterogeneous requests. We empirically demonstrate that \flora/ retains the performance merits of \lora/, showcasing competitive results on the MultiPL-E code generation benchmark spanning over 8 languages and a multilingual speech recognition task across 6 languages.

Miscellaneous Aspects of Machine Learning · Representation Learning

Irene Cannistraci, Luca Moschella, Marco Fumero, Valentino Maiorca, Emanuele Rodolà

It has been observed that representations learned by distinct neural networks conceal structural similarities when the models are trained under similar inductive biases. From a geometric perspective, identifying the classes of transformations and the related invariances that connect these representations is fundamental to unlocking applications, such as merging, stitching, and reusing different neural modules. However, estimating task-specific transformations a priori can be challenging and expensive due to several factors (e.g., weights initialization, training hyperparameters, or data modality). To this end, we introduce a versatile method to directly incorporate a set of invariances into the representations, constructing a product space of invariant components on top of the latent representations without requiring prior knowledge about the optimal invariance to infuse. We validate our solution on classification and reconstruction tasks, observing consistent latent similarity and downstream performance improvements in a zero-shot stitching setting. The experimental analysis comprises three modalities (vision, text, and graphs), twelve pretrained foundational models, nine benchmarks, and several architectures trained from scratch.

Miscellaneous Aspects of Machine Learning · Causality

Ziqi Xu, Debo Cheng, Jiuyong Li, Jixue Liu, Lin Liu, Kui Yu

An essential and challenging problem in causal inference is causal effect estimation from observational data. The problem becomes more difficult with the presence of unobserved confounding variables. The front-door adjustment is an approach for dealing with unobserved confounding variables. However, the restriction for the standard front-door adjustment is difficult to satisfy in practice. In this paper, we relax some of the restrictions by proposing the concept of conditional front-door (CFD) adjustment and develop the theorem that guarantees the causal effect identifiability of CFD adjustment. By leveraging the ability of deep generative models, we propose CFDiVAE to learn the representation of the CFD adjustment variable directly from data with the identifiable Variational AutoEncoder and formally prove the model identifiability. Extensive experiments on synthetic datasets validate the effectiveness of CFDiVAE and its superiority over existing methods. The experiments also show that the performance of CFDiVAE is less sensitive to the causal strength of unobserved confounding variables. We further apply CFDiVAE to a real-world dataset to demonstrate its potential application.

Deep Learning

Jason Chun Lok Li, Steven Luo, Le Xu, Ngai Wong

Coordinate network or implicit neural representation (INR) is a fast-emerging method for encoding natural signals (such as images and videos) with the benefits of a compact neural representation. While numerous methods have been proposed to increase the encoding capabilities of an INR, an often overlooked aspect is the inference efficiency, usually measured in multiply-accumulate (MAC) count. This is particularly critical in use cases where inference bandwidth is greatly limited by hardware constraints. To this end, we propose the Activation-Sharing Multi-Resolution (ASMR) coordinate network that combines multi-resolution coordinate decomposition with hierarchical modulations. Specifically, an ASMR model enables the sharing of activations across grids of the data. This largely decouples its inference cost from its depth which is directly correlated to its reconstruction capability, and renders a near $O(1)$ inference complexity irrespective of the number of layers. Experiments show that ASMR can reduce the MAC of a vanilla SIREN model by up to 500$\times$ while achieving an even higher reconstruction quality than its SIREN baseline.

Deep Learning · Graph Neural Networks

Xiaoxin He, Xavier Bresson, Thomas Laurent, Adam Perold, Yann LeCun, Bryan Hooi

Representation learning on text-attributed graphs (TAGs) has become a critical research problem in recent years. A typical example of a TAG is a paper citation graph, where the text of each paper serves as node attributes. Initial graph neural network (GNN) pipelines handled these text attributes by transforming them into shallow or hand-crafted features, such as skip-gram or bag-of-words features. Recent efforts have focused on enhancing these pipelines with language models (LMs), which typically demand intricate designs and substantial computational resources. With the advent of powerful large language models (LLMs) such as GPT or Llama2, which demonstrate an ability to reason and to utilize general knowledge, there is a growing need for techniques which combine the textual modelling abilities of LLMs with the structural learning capabilities of GNNs. Hence, in this work, we focus on leveraging LLMs to capture textual information as features, which can be used to boost GNN performance on downstream tasks. A key innovation is our use of \emph{explanations as features}: we prompt an LLM to perform zero-shot classification, request textual explanations for its decision-making process, and design an \emph{LLM-to-LM interpreter} to translate these explanations into informative features for downstream GNNs. Our experiments demonstrate that our method achieves state-of-the-art results on well-established TAG datasets, including \texttt{Cora}, \texttt{PubMed}, \texttt{ogbn-arxiv}, as well as our newly introduced dataset, \texttt{tape-arxiv23}. Furthermore, our method significantly speeds up training, achieving a 2.88 times improvement over the closest baseline on \texttt{ogbn-arxiv}. Lastly, we believe the versatility of the proposed method extends beyond TAGs and holds the potential to enhance other tasks involving graph-text data~\footnote{Our codes and datasets are available at: \url{https://github.com/XiaoxinHe/TAPE}}.

Linqi Zhou, Aaron Lou, Samar Khanna, Stefano Ermon

Diffusion models are powerful generative models that map noise to data using stochastic processes. However, for many applications such as image editing, the model input comes from a distribution that is not random noise. As such, diffusion models must rely on cumbersome methods like guidance or projected sampling to incorporate this information in the generative process. In our work, we propose Denoising Diffusion Bridge Models (DDBMs), a natural alternative to this paradigm based on *diffusion bridges*, a family of processes that interpolate between two paired distributions given as endpoints. Our method learns the score of the diffusion bridge from data and maps from one endpoint distribution to the other by solving a (stochastic) differential equation based on the learned score. Our method naturally unifies several classes of generative models, such as score-based diffusion models and OT-Flow-Matching, allowing us to adapt existing design and architectural choices to our more general problem. Empirically, we apply DDBMs to challenging image datasets in both pixel and latent space. On standard image translation problems, DDBMs achieve significant improvement over baseline methods, and, when we reduce the problem to image generation by setting the source distribution to random noise, DDBMs achieve comparable FID scores to state-of-the-art methods despite being built for a more general task.