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Optimization/Discrete and Combinatorial Optimization

Taihei Oki, Shinsaku Sakaue

Recent years have seen a growing interest in accelerating optimization algorithms with machine-learned predictions. Sakaue and Oki (NeurIPS 2022) have developed a general framework that warm-starts the *L-convex function minimization* method with predictions, revealing the idea's usefulness for various discrete optimization problems. In this paper, we present a framework for using predictions to accelerate *M-convex function minimization*, thus complementing previous research and extending the range of discrete optimization algorithms that can benefit from predictions. Our framework is particularly effective for an important subclass called *laminar convex minimization*, which appears in many operations research applications. Our methods can improve time complexity bounds upon the best worst-case results by using predictions and even have potential to go beyond a lower-bound result.

Nate Gruver, Samuel Stanton, Nathan Frey, Tim G. J. Rudner, Isidro Hotzel, Julien Lafrance-Vanasse, Arvind Rajpal, Kyunghyun Cho, Andrew Wilson

A popular approach to protein design is to combine a generative model with a discriminative model for conditional sampling. The generative model samples plausible sequences while the discriminative model guides a search for sequences with high fitness. Given its broad success in conditional sampling, classifier-guided diffusion modeling is a promising foundation for protein design, leading many to develop guided diffusion models for structure with inverse folding to recover sequences. In this work, we propose diffusioN Optimized Sampling (NOS), a guidance method for discrete diffusion models that follows gradients in the hidden states of the denoising network. NOS makes it possible to perform design directly in sequence space, circumventing significant limitations of structure-based methods, including scarce data and challenging inverse design. Moreover, we use NOS to generalize LaMBO, a Bayesian optimization procedure for sequence design that facilitates multiple objectives and edit-based constraints. The resulting method, LaMBO-2, enables discrete diffusions and stronger performance with limited edits through a novel application of saliency maps. We apply LaMBO-2 to a real-world protein design task, optimizing antibodies for higher expression yield and binding affinity to several therapeutic targets under locality and developability constraints, attaining a 99\% expression rate and 40\% binding rate in exploratory in vitro experiments.

Optimization/Sampling and Optimization

Katayoon Goshvadi, Haoran Sun, Xingchao Liu, Azade Nova, Ruqi Zhang, Will Grathwohl, Dale Schuurmans, Hanjun Dai

Sampling in discrete spaces, with critical applications in simulation and optimization, has recently been boosted by significant advances in gradient-based approaches that exploit modern accelerators like GPUs. However, two key challenges are hindering further advancement in research on discrete sampling. First, since there is no consensus on experimental settings and evaluation setups, the empirical results in different research papers are often not comparable. Second, implementing samplers and target distributions often requires a nontrivial amount of effort in terms of calibration and parallelism. To tackle these challenges, we propose DISCS (DISCrete Sampling), a tailored package and benchmark that supports unified and efficient experiment implementation and evaluations for discrete sampling in three types of tasks: sampling from classical graphical models and energy based generative models, and sampling for solving combinatorial optimization. Throughout the comprehensive evaluations in DISCS, we gained new insights into scalability, design principles for proposal distributions, and lessons for adaptive sampling design. DISCS efficiently implements representative discrete samplers in existing research works as baselines and offers a simple interface that researchers can conveniently add new discrete samplers and directly compare their performance with the benchmark result in a calibrated setup.

Probabilistic Methods

Tsai Hor Chan, Kin Wai Lau, Jiajun Shen, Guosheng Yin, Lequan Yu

Uncertainty estimation aims to evaluate the confidence of a trained deep neural network. However, existing uncertainty estimation approaches rely on low-dimensional distributional assumptions and thus suffer from the high dimensionality of latent features. Existing approaches tend to focus on uncertainty on discrete classification probabilities, which leads to poor generalizability to uncertainty estimation for other tasks. Moreover, most of the literature requires seeing the out-of-distribution (OOD) data in the training for better estimation of uncertainty, which limits the uncertainty estimation performance in practice because the OOD data are typically unseen. To overcome these limitations, we propose a new framework using data-adaptive high-dimensional hypothesis testing for uncertainty estimation, which leverages the statistical properties of the feature representations. Our method directly operates on latent representations and thus does not require retraining the feature encoder under a modified objective. The test statistic relaxes the feature distribution assumptions to high dimensionality, and it is more discriminative to uncertainties in the latent representations. We demonstrate that encoding features with Bayesian neural networks can enhance testing performance and lead to more accurate uncertainty estimation. We further introduce a family-wise testing procedure to determine the optimal threshold of OOD detection, which minimizes the false discovery rate (FDR). Extensive experiments validate the satisfactory performance of our framework on uncertainty estimation and task-specific prediction over a variety of competitors. The experiments on the OOD detection task also show satisfactory performance of our method when the OOD data are unseen in the training. Codes are available at https://github.com/HKU-MedAI/bnn_uncertainty.

Miscellaneous Aspects of Machine Learning/Causality

Dennis Frauen, Valentyn Melnychuk, Stefan Feuerriegel

Causal inference from observational data is crucial for many disciplines such as medicine and economics. However, sharp bounds for causal effects under relaxations of the unconfoundedness assumption (causal sensitivity analysis) are subject to ongoing research. So far, works with sharp bounds are restricted to fairly simple settings (e.g., a single binary treatment). In this paper, we propose a unified framework for causal sensitivity analysis under unobserved confounding in various settings. For this, we propose a flexible generalization of the marginal sensitivity model (MSM) and then derive sharp bounds for a large class of causal effects. This includes (conditional) average treatment effects, effects for mediation analysis and path analysis, and distributional effects. Furthermore, our sensitivity model is applicable to discrete, continuous, and time-varying treatments. It allows us to interpret the partial identification problem under unobserved confounding as a distribution shift in the latent confounders while evaluating the causal effect of interest. In the special case of a single binary treatment, our bounds for (conditional) average treatment effects coincide with recent optimality results for causal sensitivity analysis. Finally, we propose a scalable algorithm to estimate our sharp bounds from observational data.

Deep Learning/Generative Models and Autoencoders

Pengze Zhang, Hubery Yin, Chen Li, Xiaohua Xie

Continuous diffusion models are commonly acknowledged to display a deterministic probability flow, whereas discrete diffusion models do not. In this paper, we aim to establish the fundamental theory for the probability flow of discrete diffusion models. Specifically, we first prove that the continuous probability flow is the Monge optimal transport map under certain conditions, and also present an equivalent evidence for discrete cases. In view of these findings, we are then able to define the discrete probability flow in line with the principles of optimal transport. Finally, drawing upon our newly established definitions, we propose a novel sampling method that surpasses previous discrete diffusion models in its ability to generate more certain outcomes. Extensive experiments on the synthetic toy dataset and the CIFAR-10 dataset have validated the effectiveness of our proposed discrete probability flow. Code is released at: https://github.com/PangzeCheung/Discrete-Probability-Flow.

Optimization/Discrete and Combinatorial Optimization

Yossi Azar, Debmalya Panigrahi, Noam Touitou

In recent years, there has been an increasing focus on designing online algorithms with (machine-learned) predictions. The ideal learning-augmented algorithm is comparable to the optimum when given perfect predictions (consistency), to the best online approximation for arbitrary predictions (robustness), and should interpolate between these extremes as a smooth function of the prediction error. In this paper, we quantify these guarantees in terms of a general property that we call discrete-smoothness, and achieve discrete-smooth algorithms for online covering, specifically the facility location and set cover problems. For set cover, our work improves the results of Bamas, Maggiori, and Svensson (2020) by augmenting consistency and robustness with smoothness guarantees. For facility location, our work improves on prior work by Almanza et al. (2021) by generalizing to nonuniform costs and also providing smoothness guarantees by augmenting consistency and robustness.

Probabilistic Methods/Gaussian Processes

Austin Tripp, Sergio Bacallado, Sukriti Singh, José Miguel Hernández-Lobato

The Tanimoto coefficient is commonly used to measure the similarity between molecules represented as discrete fingerprints,either as a distance metric or a positive definite kernel. While many kernel methods can be accelerated using random feature approximations, at present there is a lack of such approximations for the Tanimoto kernel. In this paper we propose two kinds of novel random features to allow this kernel to scale to large datasets, and in the process discover a novel extension of the kernel to real-valued vectors. We theoretically characterize these random features, and provide error bounds on the spectral norm of the Gram matrix. Experimentally, we show that these random features are effective at approximating the Tanimoto coefficient of real-world datasetsand are useful for molecular property prediction and optimization tasks. Future updates to this work will be available at http://arxiv.org/abs/2306.14809.

Theory/Online Learning and Bandits

Shipra Agrawal, Yiding Feng, Wei Tang

We consider a novel dynamic pricing and learning setting where in addition to setting prices of products in sequential rounds, the seller also ex-ante commits to ‘advertising schemes’. That is, in the beginning of each round the seller can decide what kind of signal they will provide to the buyer about the product’s quality upon realization. Using the popular Bayesian persuasion framework to model the effect of these signals on the buyers’ valuation and purchase responses, we formulate the problem of finding an optimal design of the advertising scheme along with a pricing scheme that maximizes the seller’s expected revenue. Without any apriori knowledge of the buyers’ demand function, our goal is to design an online algorithm that can use past purchase responses to adaptively learn the optimal pricing and advertising strategy. We study the regret of the algorithm when compared to the optimal clairvoyant price and advertisingscheme. Our main result is a computationally efficient online algorithm that achieves an $O(T^{2/3}(m \log T )^{1/3})$ regret bound when the valuation function is linear in the product quality. Here $m$ is the cardinality of the discrete product quality domain and $T$ is the time horizon. This result requires some natural monotonicity and Lipschitz assumptions on the valuation function, but no Lipschitz or smoothness assumption on the buyers’ demand function. For constant $m$, our result matches the regret lower bound for dynamic pricing within logarithmic factors, which is a special case of our problem. We also obtain several improved results for the widely considered special case of additive valuations, including an $\tilde{O}(T^{2/3})$ regret bound independent of $m$ when $m\le T^{1/3}$.

Theory/Learning Theory

Saghar Adler, Vijay Subramanian

Models of many real-life applications, such as queueing models of communication networks or computing systems, have a countably infinite state-space. Algorithmic and learning procedures that have been developed to produce optimal policies mainly focus on finite state settings, and do not directly apply to these models. To overcome this lacuna, in this work we study the problem of optimal control of a family of discrete-time countable state-space Markov Decision Processes (MDPs) governed by an unknown parameter $\theta\in\Theta$, and defined on a countably-infinite state-space $\mathcal X=\mathbb{Z}_+^d$, with finite action space $\mathcal A$, and an unbounded cost function. We take a Bayesian perspective with the random unknown parameter $\boldsymbol{\theta}^*$ generated via a given fixed prior distribution on $\Theta$. To optimally control the unknown MDP, we propose an algorithm based on Thompson sampling with dynamically-sized episodes: at the beginning of each episode, the posterior distribution formed via Bayes' rule is used to produce a parameter estimate, which then decides the policy applied during the episode. To ensure the stability of the Markov chain obtained by following the policy chosen for each parameter, we impose ergodicity assumptions. From this condition and using the solution of the average cost Bellman equation, we establish an $\tilde O(dh^d\sqrt{|\mathcal A|T})$ upper bound on the Bayesian regret of our algorithm, where $T$ is the time-horizon. Finally, to elucidate the applicability of our algorithm, we consider two different queueing models with unknown dynamics, and show that our algorithm can be applied to develop approximately optimal control algorithms.

Reinforcement Learning

Huining Yuan, Hongkun Dou, Xingyu Jiang, Yue Deng

Aligning the world model with the environment for the agent’s specific task is crucial in model-based reinforcement learning. While value-equivalent models may achieve better task awareness than maximum-likelihood models, they sacrifice a large amount of semantic information and face implementation issues. To combine the benefits of both types of models, we propose Task-aware Environment Modeling Pipeline with bi-level Optimization (TEMPO), a bi-level model learning framework that introduces an additional level of optimization on top of a maximum-likelihood model by incorporating a meta weighter network that weights each training sample. The meta weighter in the upper level learns to generate novel sample weights by minimizing a proposed task-aware model loss. The model in the lower level focuses on important samples while maintaining rich semantic information in state representations. We evaluate TEMPO on a variety of continuous and discrete control tasks from the DeepMind Control Suite and Atari video games. Our results demonstrate that TEMPO achieves state-of-the-art performance regarding asymptotic performance, training stability, and convergence speed.

Probabilistic Methods/Structure Learning

Yeshu Li, Brian Ziebart

We consider the problem of learning the exact skeleton of general discrete Bayesian networks from potentially corrupted data. Building on distributionally robust optimization and a regression approach, we propose to optimize the most adverse risk over a family of distributions within bounded Wasserstein distance or KL divergence to the empirical distribution. The worst-case risk accounts for the effect of outliers. The proposed approach applies for general categorical random variables without assuming faithfulness, an ordinal relationship or a specific form of conditional distribution. We present efficient algorithms and show the proposed methods are closely related to the standard regularized regression approach. Under mild assumptions, we derive non-asymptotic guarantees for successful structure learning with logarithmic sample complexities for bounded-degree graphs. Numerical study on synthetic and real datasets validates the effectiveness of our method.

Optimization/Control and Optimization

Ming Xu, Timothy L. Molloy, Stephen Gould

This paper proposes a new method for differentiating through optimal trajectories arising from non-convex, constrained discrete-time optimal control (COC) problems using the implicit function theorem (IFT). Previous works solve a differential Karush-Kuhn-Tucker (KKT) system for the trajectory derivative, and achieve this efficiently by solving an auxiliary Linear Quadratic Regulator (LQR) problem. In contrast, we directly evaluate the matrix equations which arise from applying variable elimination on the Lagrange multiplier terms in the (differential) KKT system. By appropriately accounting for the structure of the terms within the resulting equations, we show that the trajectory derivatives scale linearly with the number of timesteps. Furthermore, our approach allows for easy parallelization, significantly improved scalability with model size, direct computation of vector-Jacobian products and improved numerical stability compared to prior works. As an additional contribution, we unify prior works, addressing claims that computing trajectory derivatives using IFT scales quadratically with the number of timesteps. We evaluate our method on a both synthetic benchmark and four challenging, learning from demonstration benchmarks including a 6-DoF maneuvering quadrotor and 6-DoF rocket powered landing.

Theory/Game Theory

Tao Lin, Yiling Chen

We consider a Bayesian forecast aggregation model where $n$ experts, after observing private signals about an unknown binary event, report their posterior beliefs about the event to a principal, who then aggregates the reports into a single prediction for the event. The signals of the experts and the outcome of the event follow a joint distribution that is unknown to the principal, but the principal has access to i.i.d. "samples" from the distribution, where each sample is a tuple of the experts' reports (not signals) and the realization of the event. Using these samples, the principal aims to find an $\varepsilon$-approximately optimal aggregator, where optimality is measured in terms of the expected squared distance between the aggregated prediction and the realization of the event. We show that the sample complexity of this problem is at least $\tilde \Omega(m^{n-2} / \varepsilon)$ for arbitrary discrete distributions, where $m$ is the size of each expert's signal space. This sample complexity grows exponentially in the number of experts $n$. But, if the experts' signals are independent conditioned on the realization of the event, then the sample complexity is significantly reduced, to $\tilde O(1 / \varepsilon^2)$, which does not depend on $n$. Our results can be generalized to non-binary events. The proof of our results uses a reduction from the distribution learning problem and reveals the fact that forecast aggregation is almost as difficult as distribution learning.

Deep Learning/Recurrent Networks

Haggai Agmon, Yoram Burak

The storage of continuous variables in working memory is hypothesized to be sustained in the brain by the dynamics of recurrent neural networks (RNNs) whose steady states form continuous manifolds. In some cases, it is thought that the synaptic connectivity supports multiple attractor manifolds, each mapped to a different context or task. For example, in hippocampal area CA3, positions in distinct environments are represented by distinct sets of population activity patterns, each forming a continuum. It has been argued that the embedding of multiple continuous attractors in a single RNN inevitably causes detrimental interference: quenched noise in the synaptic connectivity disrupts the continuity of each attractor, replacing it by a discrete set of steady states that can be conceptualized as lying on local minima of an abstract energy landscape. Consequently, population activity patterns exhibit systematic drifts towards one of these discrete minima, thereby degrading the stored memory over time. Here we show that it is possible to dramatically attenuate these detrimental interference effects by adjusting the synaptic weights. Synaptic weight adjustment are derived from a loss function that quantifies the roughness of the energy landscape along each of the embedded attractor manifolds. By minimizing this loss function, the stability of states can be dramatically improved, without compromising the capacity.

Optimization/Control and Optimization

Junlin Wu, Andrew Clark, Yiannis Kantaros, Yevgeniy Vorobeychik

While ensuring stability for linear systems is well understood, it remains a major challenge for nonlinear systems. A general approach in such cases is to compute a combination of a Lyapunov function and an associated control policy. However, finding Lyapunov functions for general nonlinear systems is a challenging task. To address this challenge, several methods have been proposed that represent Lyapunov functions using neural networks. However, such approaches either focus on continuous-time systems, or highly restricted classes of nonlinear dynamics. We propose the first approach for learning neural Lyapunov control in a broad class of discrete-time systems. Three key ingredients enable us to effectively learn provably stable control policies. The first is a novel mixed-integer linear programming approach for verifying the discrete-time Lyapunov stability conditions, leveraging the particular structure of these conditions. The second is a novel approach for computing verified sublevel sets. The third is a heuristic gradient-based method for quickly finding counterexamples to significantly speed up Lyapunov function learning. Our experiments on four standard benchmarks demonstrate that our approach significantly outperforms state-of-the-art baselines. For example, on the path tracking benchmark, we outperform recent neural Lyapunov control baselines by an order of magnitude in both running time and the size of the region of attraction, and on two of the four benchmarks (cartpole and PVTOL), ours is the first automated approach to return a provably stable controller. Our code is available at: https://github.com/jlwu002/nlc_discrete.

Reinforcement Learning/Risk Sensitive

Jia Lin Hau, Erick Delage, Mohammad Ghavamzadeh, Marek Petrik

Optimizing static risk-averse objectives in Markov decision processes is difficult because they do not admit standard dynamic programming equations common in Reinforcement Learning (RL) algorithms. Dynamic programming decompositions that augment the state space with discrete risk levels have recently gained popularity in the RL community. Prior work has shown that these decompositions are optimal when the risk level is discretized sufficiently. However, we show that these popular decompositions for Conditional-Value-at-Risk (CVaR) and Entropic-Value-at-Risk (EVaR) are inherently suboptimal regardless of the discretization level. In particular, we show that a saddle point property assumed to hold in prior literature may be violated. However, a decomposition does hold for Value-at-Risk and our proof demonstrates how this risk measure differs from CVaR and EVaR. Our findings are significant because risk-averse algorithms are used in high-stake environments, making their correctness much more critical.

Applications/Computer Vision

Ruiying Lu, YuJie Wu, Long Tian, Dongsheng Wang, Bo Chen, Xiyang Liu, Ruimin Hu

Unsupervised image Anomaly Detection (UAD) aims to learn robust and discriminative representations of normal samples. While separate solutions per class endow expensive computation and limited generalizability, this paper focuses on building a unified framework for multiple classes. Under such a challenging setting, popular reconstruction-based networks with continuous latent representation assumption always suffer from the "identical shortcut" issue, where both normal and abnormal samples can be well recovered and difficult to distinguish. To address this pivotal issue, we propose a hierarchical vector quantized prototype-oriented Transformer under a probabilistic framework. First, instead of learning the continuous representations, we preserve the typical normal patterns as discrete iconic prototypes, and confirm the importance of Vector Quantization in preventing the model from falling into the shortcut. The vector quantized iconic prototypes are integrated into the Transformer for reconstruction, such that the abnormal data point is flipped to a normal data point. Second, we investigate an exquisite hierarchical framework to relieve the codebook collapse issue and replenish frail normal patterns. Third, a prototype-oriented optimal transport method is proposed to better regulate the prototypes and hierarchically evaluate the abnormal score. By evaluating on MVTec-AD and VisA datasets, our model surpasses the state-of-the-art alternatives and possesses good interpretability. The code is available at https://github.com/RuiyingLu/HVQ-Trans.

Optimization/Discrete and Combinatorial Optimization

Zhiqing Sun, Yiming Yang

Neural network-based Combinatorial Optimization (CO) methods have shown promising results in solving various NP-complete (NPC) problems without relying on hand-crafted domain knowledge. This paper broadens the current scope of neural solvers for NPC problems by introducing a new graph-based diffusion framework, namely DIFUSCO. It formulates NPC problems into a discrete {0, 1}-vector space and uses graph-based denoising diffusion models to generate high-quality solutions. Specifically, we explore diffusion models with Gaussian and Bernoulli noise, respectively, and also introduce an effective inference schedule to improve the generation quality. We evaluate our methods on two well-studied combinatorial optimization problems: Traveling Salesman Problem (TSP) and Maximal Independent Set (MIS). Experimental results show that DIFUSCO strongly outperforms the previous state-of-the-art neural solvers, improving the performance gap between ground-truth and neural solvers from 1.76% to 0.46% on TSP-500, from 2.46% to 1.17% on TSP-1000, and from 3.19% to 2.58% on TSP-10000. For the MIS problem, DIFUSCO outperforms the previous state-of-the-art neural solver on the challenging SATLIB benchmark. Our code is available at [this url](https://github.com/Edward-Sun/DIFUSCO).

Optimization/Discrete and Combinatorial Optimization

Lennert De Smet, Emanuele Sansone, Pedro Zuidberg Dos Martires

Categorical random variables can faithfully represent the discrete and uncertain aspects of data as part of a discrete latent variable model. Learning in such models necessitates taking gradients with respect to the parameters of the categorical probability distributions, which is often intractable due to their combinatorial nature. A popular technique to estimate these otherwise intractable gradients is the Log-Derivative trick. This trick forms the basis of the well-known REINFORCE gradient estimator and its many extensions. While the Log-Derivative trick allows us to differentiate through samples drawn from categorical distributions, it does not take into account the discrete nature of the distribution itself. Our first contribution addresses this shortcoming by introducing the CatLog-Derivative trick -- a variation of the Log-Derivative trick tailored towards categorical distributions. Secondly, we use the CatLog-Derivative trick to introduce IndeCateR, a novel and unbiased gradient estimator for the important case of products of independent categorical distributions with provably lower variance than REINFORCE. Thirdly, we empirically show that IndeCateR can be efficiently implemented and that its gradient estimates have significantly lower bias and variance for the same number of samples compared to the state of the art.