论文检索

Applications · Genetics, Cell Biology, etc

Rui Peng, Yuchen Lu, Qichen Sun, Yuxing Lu, Chi Zhang, Ziru Liu, Jinzhuo Wang

Gene regulatory network (GRN) inference serves as a cornerstone for deciphering cellular decision-making processes. Early approaches rely exclusively on gene expression data, thus their predictive power remain fundamentally constrained by the vast combinatorial space of potential gene-gene interactions. Subsequent methods integrate prior knowledge to mitigate this challenge by restricting the solution space to biologically plausible interactions. However, we argue that the effectiveness of these approaches is contingent upon the precision of prior information and the reduction in the search space will circumscribe the models' potential for novel biological discoveries. To address these limitations, we introduce KINDLE, a three-stage framework that decouples GRN inference from prior knowledge dependencies. KINDLE trains a teacher model that integrates prior knowledge with temporal gene expression dynamics and subsequently distills this encoded knowledge to a student model, enabling accurate GRN inference solely from expression data without access to any prior. KINDLE achieves state-of-the-art performance across four benchmark datasets. Notably, it successfully identifies key transcription factors governing mouse embryonic development and precisely characterizes their functional roles. In mouse hematopoietic stem cell data, KINDLE accurately predicts fate transition outcomes following knockout of two critical regulators (Gata1 and Spi1). These biological validations demonstrate our framework's dual capability in maintaining topological inference precision while preserving discovery potential for novel biological mechanisms.

Social Aspects · Privacy-preserving Statistics and Machine Learning

Yijun Quan, Zushu Li, Giovanni Montana

Growing data privacy demands, driven by regulations like GDPR and CCPA, require machine unlearning methods capable of swiftly removing the influence of specific training points. Although verified approaches like SISA, using data slicing and checkpointing, achieve efficient unlearning for single models by reverting to intermediate states, these methods struggle in teacher-student knowledge distillation settings. Unlearning in the teacher typically forces costly, complete student retraining due to pervasive information propagation during distillation. Our primary contribution is PURGE (Partitioned Unlearning with Retraining Guarantee for Ensembles), a novel framework integrating verified unlearning with distillation. We introduce constituent mapping and an incremental multi-teacher strategy that partitions the distillation process, confines each teacher constituent’s impact to distinct student data subsets, and crucially maintains data isolation. The PURGE framework substantially reduces retraining overhead—requiring only partial student updates—when teacher-side unlearning occurs. We provide both theoretical analysis, quantifying significant speed-ups in the unlearning process, and empirical validation on multiple datasets, demonstrating that PURGE achieves these efficiency gains while maintaining student accuracy comparable to standard baselines.

Reinforcement Learning · Batch Offline

Jongchan Park, Mingyu Park, Donghwan Lee

Offline reinforcement learning (RL) aims to learn a policy from a fixed dataset without additional environment interaction. However, effective offline policy learning often requires a large and diverse dataset to mitigate epistemic uncertainty. Collecting such data demands substantial online interactions, which are costly or infeasible in many real-world domains. Therefore, improving policy learning from limited offline data—achieving high data efficiency—is critical for practical offline RL. In this paper, we propose a simple yet effective plug-and-play pretraining framework that initializes the feature representation of a $Q$-network to enhance data efficiency in offline RL. Our approach employs a shared $Q$-network architecture trained in two stages: pretraining a backbone feature extractor with a transition prediction head; training a $Q$-network—combining the backbone feature extractor and a $Q$-value head—with *any* offline RL objective. Extensive experiments on the D4RL, Robomimic, V-D4RL, and ExoRL benchmarks show that our method substantially improves both performance and data efficiency across diverse datasets and domains. Remarkably, with only **10\%** of the dataset, our approach outperforms standard offline RL baselines trained on the full data.

Optimization · Large Scale, Parallel and Distributed

Khiem HUYNH, Malcolm Egan, Giovanni Neglia, Jean-Marie Gorce

Federated learning (FL) is now recognized as a key framework for communication-efficient collaborative learning. Most theoretical and empirical studies, however, rely on the assumption that clients have access to pre-collected data sets, with limited investigation into scenarios where clients continuously collect data. In many real-world applications, particularly when data is generated by physical or biological processes, client data streams are often modeled by non-stationary Markov processes. Unlike standard i.i.d. sampling, the performance of FL with Markovian data streams remains poorly understood due to the statistical dependencies between client samples over time. In this paper, we investigate whether FL can still support collaborative learning with Markovian data streams. Specifically, we analyze the performance of Minibatch SGD, Local SGD, and a variant of Local SGD with momentum. We answer affirmatively under standard assumptions and smooth non-convex client objectives: the sample complexity is proportional to the inverse of the number of clients with a communication complexity comparable to the i.i.d. scenario. However, the sample complexity for Markovian data streams remains higher than for i.i.d. sampling. Our analysis is validated via experiments with real pollution monitoring time series data.

Theory · Reinforcement Learning and Planning

Imad Aouali

Efficient online decision-making in contextual bandits is challenging, as methods without informative priors often suffer from computational or statistical inefficiencies. In this work, we leverage pre-trained diffusion models as expressive priors to capture complex action dependencies and develop a practical algorithm that efficiently approximates posteriors under such priors, enabling both fast updates and sampling. Empirical results demonstrate the effectiveness and versatility of our approach across diverse contextual bandit settings.

Theory · Domain Adaptation and Transfer Learning

Yuyao Wang, Yu-Hung Cheng, Debarghya Mukherjee, Huimin Cheng

Graphon models provide a flexible nonparametric framework for estimating latent connectivity probabilities in networks, enabling a range of downstream applications such as link prediction and data augmentation. However, accurate graphon estimation typically requires a large graph, whereas in practice, one often only observes a small-sized network. One approach to addressing this issue is to adopt a transfer learning framework, which aims to improve estimation in a small target graph by leveraging structural information from a larger, related source graph. In this paper, we propose a novel method, namely GTRANS, a transfer learning framework that integrates neighborhood smoothing and Gromov-Wasserstein optimal transport to align and transfer structural patterns between graphs. To prevent negative transfer, GTRANS includes an adaptive debiasing mechanism that identifies and corrects for target-specific deviations via residual smoothing. We provide theoretical guarantees on the stability of the estimated alignment matrix and demonstrate the effectiveness of GTRANS in improving the accuracy of target graph estimation through extensive synthetic and real data experiments. These improvements translate directly to enhanced performance in downstream applications, such as the graph classification task and the link prediction task.

Deep Learning · Generative Models and Autoencoders

WANTONG XIE, Yi-Xiang Hu, Jieyang Xu, Feng Wu, Xiangyang Li

Optimization plays a central role in Operations Research (OR) and numerous industrial applications, yet automating the end-to-end process of translating natural language descriptions into executable optimization programs remains a formidable challenge. While recent efforts have applied Large Language Models (LLMs) to this task, existing approaches are hindered by high inference costs, limited robustness across domains, and weak verification mechanisms. In this work, we propose MURKA, a reinforcement learning and knowledge distillation-based framework that enhances LLM-driven optimization modeling via collaborative agent alignment. MURKA orchestrates three specialized agents---Extractor, Solver, and Checker---to achieve accurate problem understanding, robust formulation, and verifiable execution. The Extractor is trained using group relative policy optimization with a composite reward function that incorporates semantic correctness and execution fidelity. The Solver benefits from knowledge distillation from a powerful teacher model, yielding structurally valid and executable formulations in AMPL. The Checker iteratively verifies solution correctness via solver feedback. We validate MURKA's generalizability through extensive experiments across diverse OR benchmarks, demonstrating its robustness and scalability. Experimental results on eight diverse OR benchmarks, including NLP4LP, ComplexOR, and NL4Opt, demonstrate that MURKA, built on the LLaMa3-8B backbone, achieves a 5.9\% absolute improvement in solution accuracy and a 5.1\% increase in execution success rate compared to leading baselines. These results establish MURKA as an effective and scalable paradigm for LLM-driven optimization, with strong potential for deployment in real-world OR applications.

Deep Learning · Everything Else

Beibu Li, Qichao Shentu, Yang Shu, Hui Zhang, Ming Li, Ning Jin, Bin Yang, Chenjuan Guo

Time series anomaly detection plays a crucial role in a wide range of real-world applications. Given that time series data can exhibit different patterns at different sampling granularities, multi-scale modeling has proven beneficial for uncovering latent anomaly patterns that may not be apparent at a single scale. However, existing methods often model multi-scale information independently or rely on simple feature fusion strategies, neglecting the dynamic changes in cross-scale associations that occur during anomalies. Moreover, most approaches perform multi-scale modeling based on fixed sliding windows, which limits their ability to capture comprehensive contextual information. In this work, we propose CrossAD, a novel framework for time series Anomaly Detection that takes Cross-scale associations and Cross-window modeling into account. We propose a cross-scale reconstruction that reconstructs fine-grained series from coarser series, explicitly capturing cross-scale associations. Furthermore, we design a query library and incorporate global multi-scale context to overcome the limitations imposed by fixed window sizes. Extensive experiments conducted on seven real-world datasets using nine evaluation metrics validate the effectiveness of CrossAD, demonstrating state-of-the-art performance in anomaly detection.

Applications · Robotics

Yuxiang Yan, Zhiyuan Zhou, Xin Gao, Guanghao Li, Shenglin Li, Jiaqi Chen, Qunyan Pu, Jian Pu

Manipulation in cluttered environments is challenging due to spatial dependencies among objects, where an improper manipulation order can cause collisions or blocked access. Existing approaches often overlook these spatial relationships, limiting their flexibility and scalability. To address these limitations, we propose OrderMind, a unified spatial-aware manipulation ordering framework that directly learns object manipulation priorities based on spatial context. Our architecture integrates a spatial context encoder with a temporal priority structuring module. We construct a spatial graph using k-Nearest Neighbors to aggregate geometric information from the local layout and encode both object-object and object-manipulator interactions to support accurate manipulation ordering in real-time. To generate physically and semantically plausible supervision signals, we introduce a spatial prior labeling method that guides a vision-language model to produce reasonable manipulation orders for distillation. We evaluate OrderMind on our Manipulation Ordering Benchmark, comprising 163,222 samples of varying difficulty. Extensive experiments in both simulation and real-world environments demonstrate that our method significantly outperforms prior approaches in effectiveness and efficiency, enabling robust manipulation in cluttered scenes.

Theory · Reinforcement Learning and Planning

Swetha Ganesh, Vaneet Aggarwal

Actor-Critic methods are widely used for their scalability, yet existing theoretical guarantees for infinite-horizon average-reward Markov Decision Processes (MDPs) often rely on restrictive ergodicity assumptions. We propose NAC-B, a Natural Actor-Critic with Batching, that achieves order-optimal regret of \$\tilde{O}(\sqrt{T})\$ in infinite-horizon average-reward MDPs under the unichain assumption, which permits both transient states and periodicity. This assumption is among the weakest under which the classic policy gradient theorem remains valid for average-reward settings. NAC-B employs function approximation for both the actor and the critic, enabling scalability to problems with large state and action spaces. The use of batching in our algorithm helps mitigate potential periodicity in the MDP and reduces stochasticity in gradient estimates, and our analysis formalizes these benefits through the introduction of the constants $C_{\text{hit}}$ and $C_{\text{tar}}$, which characterize the rate at which empirical averages over Markovian samples converge to the stationary distribution.

Theory · Learning Theory

Xin Li, Xiaotao Zheng, Zhihong Xia

We study a shallow variant of XNet, a neural architecture whose activation functions are derived from the Cauchy integral formula. While prior work focused on deep variants, we show that even a single-layer XNet exhibits near-exponential approximation rates—exceeding the polynomial bounds of MLPs and spline-based networks such as Kolmogorov–Arnold Networks (KANs). Empirically, XNet reduces approximation error by over 600× on discontinuous functions, achieves up to 20,000× lower residuals in physics-informed PDEs, and improves policy accuracy and sample efficiency in PPO-based reinforcement learning—while maintaining comparable or better computational efficiency than KAN baselines. These results demonstrate that expressive approximation can stem from principled activation design rather than depth alone, offering a compact, theoretically grounded alternative for function approximation, scientific computing, and control.

Theory · Learning Theory

Chengxiu HUA, Jiawen Gu, Yushun Tang

Reinforcement learning (RL) has achieved significant success across a wide range of domains, however, most existing methods are formulated in discrete time. In this work, we introduce a novel RL method for continuous-time control, where stochastic differential equations govern state-action dynamics. Departing from traditional value function-based approaches, our key contribution is the characterization of continuous-time Q-functions via a martingale condition and the linking of diffusion policy scores to the action gradient of a learned continuous Q-function by the dynamic programming principle. This insight motivates Continuous Q-Score Matching (CQSM), a score-based policy improvement algorithm. Notably, our method addresses a long-standing challenge in continuous-time RL: preserving the action-evaluation capability of Q-functions without relying on time discretization. We further provide theoretical closed-form solutions for linear-quadratic (LQ) control problems within our framework. Numerical results in simulated environments demonstrate the effectiveness of our proposed method and compare it to popular baselines.

Computer Vision · Image and Video Generation

Jiuhong Xiao, Roshan Nayak, Ning Zhang, Daniel Tortei, Giuseppe Loianno

Paired RGB-thermal data is crucial for visual-thermal sensor fusion and cross-modality tasks, including important applications such as multi-modal image alignment and retrieval. However, the scarcity of synchronized and calibrated RGB-thermal image pairs presents a major obstacle to progress in these areas. To overcome this challenge, RGB-to-Thermal (RGB-T) image translation has emerged as a promising solution, enabling the synthesis of thermal images from abundant RGB datasets for training purposes. In this study, we propose ThermalGen, an adaptive flow-based generative model for RGB-T image translation, incorporating an RGB image conditioning architecture and a style-disentangled mechanism. To support large-scale training, we curated eight public satellite-aerial, aerial, and ground RGB-T paired datasets, and introduced three new large-scale satellite-aerial RGB-T datasets--DJI-day, Bosonplus-day, and Bosonplus-night--captured across diverse times, sensor types, and geographic regions. Extensive evaluations across multiple RGB-T benchmarks demonstrate that ThermalGen achieves comparable or superior translation performance compared to existing GAN-based and diffusion-based methods. To our knowledge, ThermalGen is the first RGB-T image translation model capable of synthesizing thermal images that reflect significant variations in viewpoints, sensor characteristics, and environmental conditions. Project page: http://xjh19971.github.io/ThermalGen

Computer Vision · Classification and Understanding

Zhao Jin, Rong-Cheng Tu, Jingyi Liao, Wenhao Sun, Xiao Luo, Shunyu Liu, Dacheng Tao

3D Visual Grounding (3DVG) aims to localize target objects within a 3D scene based on natural language queries. To alleviate the reliance on costly 3D training data, recent studies have explored zero-shot 3DVG by leveraging the extensive knowledge and powerful reasoning capabilities of pre-trained LLMs and VLMs. However, existing paradigms tend to emphasize either spatial (3D-based) or semantic (2D-based) understanding, limiting their effectiveness in complex real-world applications. In this work, we introduce SPAZER — a VLM-driven agent that combines both modalities in a progressive reasoning framework. It first holistically analyzes the scene and produces a 3D rendering from the optimal viewpoint. Based on this, anchor-guided candidate screening is conducted to perform a coarse-level localization of potential objects. Furthermore, leveraging retrieved relevant 2D camera images, 3D-2D joint decision-making is efficiently performed to determine the best-matching object. By bridging spatial and semantic reasoning neural streams, SPAZER achieves robust zero-shot grounding without training on 3D-labeled data. Extensive experiments on ScanRefer and Nr3D benchmarks demonstrate that SPAZER significantly outperforms previous state-of-the-art zero-shot methods, achieving notable gains of $\mathbf{9.0\}$% and $\mathbf{10.9\}$% in accuracy.

Theory · Reinforcement Learning and Planning

Weikai Wang, Erick Delage

For continuing tasks, average cost Markov decision processes have well-documented value and can be solved using efficient algorithms. However, it explicitly assumes that the agent is risk-neutral. In this work, we extend risk-neutral algorithms to accommodate the more general class of dynamic risk measures. Specifically, we propose a relative value iteration (RVI) algorithm for planning and design two model-free Q-learning algorithms, namely a generic algorithm based on the multi-level Monte Carlo (MLMC) method, and an off-policy algorithm dedicated to utility-based shortfall risk measures. Both the RVI and MLMC-based Q-learning algorithms are proven to converge to optimality. Numerical experiments validate our analysis, confirm empirically the convergence of the off-policy algorithm, and demonstrate that our approach enables the identification of policies that are finely tuned to the intricate risk-awareness of the agent that they serve.

Deep Learning · Graph Neural Networks

Adarsh Jamadandi, Jing Xu, Adam Dziedzic, Franziska Boenisch

Deep neural networks (DNNs) have been shown to memorize their training data, but similar analyses for graph neural networks (GNNs) remain under-explored. We introduce NCMemo (Node Classification Memorization), the first framework to quantify label memorization in semi-supervised node classification. We establish an inverse relationship between memorization and graph homophily, i.e the tendency of connected nodes to share labels or features. Lower homophily significantly increases memorization, indicating that GNNs rely on label memorization when learning less homophilic graphs. We then analyze GNN training dynamics and find that increased memorization in low-homophily graphs is tightly coupled to GNNs' implicit bias toward using graph structure. When structure is less informative, models instead memorize node labels to minimize training loss. Finally, we show that nodes with higher label inconsistency in their feature-space neighborhood are more prone to memorization. Based on these insights, we investigate graph rewiring as a mitigation strategy. Our results show that rewiring reduces memorization without harming model performance, while also lowering the privacy risk for previously memorized data points. Thus, our work advances understanding of GNN learning and supports more privacy-preserving GNN deployment.

Theory · Learning Theory

Jingqiu Ding, Yiding Hua, Lucas Slot, David Steurer

We investigate implications of the (extended) low-degree conjecture (recently formalized in [moitra et al2023]) in the context of the symmetric stochastic block model. Assuming the conjecture holds, we establish that no polynomial-time algorithm can weakly recover community labels below the Kesten-Stigum (KS) threshold. In particular, we rule out polynomial-time estimators that, with constant probability, achieve $n^{-0.49}$ correlation with the true communities. Whereas, above the KS threshold, polynomial-time algorithms are known to achieve constant correlation with the true communities with high probability [massoulie et al 2014,abbe et al 2015]. To our knowledge, we provide the first rigorous evidence for such sharp transition in recovery rate for polynomial-time algorithms at the KS threshold. Notably, under a stronger version of the low-degree conjecture, our lower bound remains valid even when the number of blocks diverges. Furthermore, our results provide evidence of a computational-to-statistical gap in learning the parameters of stochastic block models. In contrast, prior work either (i) rules out polynomial-time algorithms with $1 - o(1)$ success probability [Hopkins 18, bandeira et al 2021] under the low-degree conjecture, or (ii) degree-$\text{poly}(k)$ polynomials for learning the stochastic block model [Luo et al 2023]. For this, we design a hypothesis test which succeeeds with constant probability under symmetric stochastic block model, and $1-o(1)$ probability under the distribution of \Erdos \Renyi random graphs. Our proof combines low-degree lower bounds from [Hopkins 18, bandeira et al 2021] with graph splitting and cross-validation techniques. In order to rule out general recovery algorithms, we employ the correlation preserving projection method developed in [Hopkins et al 17].

Deep Learning · Graph Neural Networks

Wei Huang, Hanchen Wang, Dong Wen, SHAOZHEN MA, Wenjie Zhang, Xuemin Lin

Graph Edit Distance (GED) is a fundamental graph similarity metric widely used in various applications. However, computing GED is an NP-hard problem. Recent state-of-the-art hybrid GED solver has shown promising performance by formulating GED as a bipartite graph matching problem, then leveraging a generative diffusion model to predict node matching between two graphs, from which both the GED and its corresponding edit path can be extracted using a traditional algorithm. However, such methods typically rely heavily on ground-truth supervision, where the ground-truth node matchings are often costly to obtain in real-world scenarios. In this paper, we propose GEDRanker, a novel unsupervised GAN-based framework for GED computation. Specifically, GEDRanker consists of a matching-based GED solver and introduces an interpretable preference-aware discriminator. By leveraging preference signals over different node matchings derived from edit path lengths, the discriminator can guide the matching-based solver toward generating high-quality node matching without the need for ground-truth supervision. Extensive experiments on benchmark datasets demonstrate that our GEDRanker enables the matching-based GED solver to achieve near-optimal solution quality without any ground-truth supervision.

Computer Vision · Image and Video Generation

Yi Dong, Yuxi Wang, Xianhui Lin, Wenqi Ouyang, Zhiqi Shen, Peiran Ren, Ruoxi Fan, Rynson Lau

Color enhancement is a crucial yet challenging task in digital photography. It demands methods that are (i) expressive enough for fine-grained adjustments, (ii) adaptable to diverse inputs, and (iii) able to preserve texture. Existing approaches typically fall short in at least one of these aspects, yielding unsatisfactory results. We propose GenColor, a novel diffusion-based framework for sophisticated, texture-preserving color enhancement. GenColor reframes the task as conditional image generation. Leveraging ControlNet and a tailored training scheme, it learns advanced color transformations that adapt to diverse lighting and content. We train GenColor on ARTISAN, our newly collected large-scale dataset of 1.2M high-quality photographs specifically curated for enhancement tasks. To overcome texture preservation limitations inherent in diffusion models, we introduce a color-transfer network with a novel degradation scheme that simulates texture–color relationships. This network achieves pixel-perfect texture preservation while enabling fine-grained color matching with the diffusion-generated reference images. Extensive experiments show that GenColor produces visually compelling results comparable to those of expert colorists and surpasses state-of-the-art methods in both subjective and objective evaluations. We have released the code and dataset.

General Machine Learning · Everything Else

Huajun Yin, Liyuan Wang, Yingqiu Zhu, Liping Zhu, Danyang Huang

With the rapid development of the big data era, Vertical Federated Learning (VFL) has been widely applied to enable data collaboration while ensuring privacy protection. However, the ultrahigh dimensionality of features and the sparse data structures inherent in large-scale datasets introduce significant computational complexity. In this paper, we propose the Vertical Federated Feature Screening (VFS) algorithm, which effectively reduces computational, communication, and encryption costs. VFS is a two-stage feature screening procedure that proceeds from coarse to fine: the first stage quickly filters out irrelevant feature groups, followed by a more refined screening of individual features. It significantly reduces the resource demands of downstream tasks such as secure joint modeling or federated feature selection. This efficiency is particularly beneficial in scenarios with ultrahigh feature dimensionality or severe class imbalance in the response variable. The statistical and computational properties of VFS are rigorously established. Numerical simulations and real-world applications demonstrate its superior performance.