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Deep Learning · Self-Supervised Learning

Yaoqi Liu, Jin Wang, Chunchen Wang, Hui Wang, Chuan Shi

In recent years, wireless signal recognition (WSR), which leverages artificial intelligence (AI) to identify properties of passively received radio signals, has garnered significant attention due to its broad applications, such as spectrum management. Existing WSR methods typically learn directly from received signals, which are distorted by physical wireless channel effects such as fading, and current denoising diffusion models lack de-channeling capabilities, which leads to performance degradation. Therefore, we propose PWC-Diff, a novel framework that integrates prior Physical Wireless Channels into the denoising Diffusion process. The framework employs a dedicated architecture named FusedFormer, which contains a fusion module and a self-attention module that jointly capture the temporal and spectral characteristics of the signals throughout the diffusion trajectory. By leveraging prior wireless channels, PWC-Diff learns to progressively “de-channel” the received signal and recover a representation closer to the transmitted signal. Extensive experiments on several datasets across three WSR tasks have achieved state-of-the-art (SOTA) performance, which demonstrates the rationality of our theory, and ablation experiments further illustrate the effectiveness of our proposed PWC-Diff.

Applications · Chemistry, Physics, and Earth Sciences

Yitian Wang, Zhao Yang, Angxiao Yue, Wentao Guo, Yaning Cui, Hongteng Xu

Modeling peptide cyclization is critical for the virtual screening of candidate peptides with desirable physical and pharmaceutical properties. This task is challenging because a cyclic peptide often exhibits diverse, ring-shaped conformations, which cannot be well captured by deterministic prediction models derived from linear peptide folding. In this study, we propose MuCO (Multi-stage Conformation Optimization), a generative peptide cyclization method that models the distribution of cyclic peptide conformations conditioned on the corresponding linear peptide. In principle, MuCO decouples the peptide cyclization task into three stages: topology-aware backbone design, generative side-chain packing, and physics-aware all-atom optimization, thereby generating and optimizing conformations of cyclic peptides in a coarse-to-fine manner. This multi-stage framework enables an efficient parallel sampling strategy for conformation generation and allows for rapid exploration of diverse, low-energy conformations. Experiments on the large-scale CPSea dataset demonstrate that MuCO significantly outperforms state-of-the-art methods in consistently in physical stability, structural diversity, secondary structure recovery, and computational efficiency, making it a promising computational tool for exploring and designing cyclic peptides.

Applications · Health / Medicine

Shuntian Zheng, Jiaqi Li, Xiaoman Lu, Shuai He, Yu Guan

Millimeter-wave (mmWave) enables privacy-preserving, illumination-robust human pose estimation (HPE), with each mmWave frame represented as a range--angle--Doppler tensor, providing spatial magnitude for localization and Doppler signatures for motion-related cues. However, existing mmWave-based HPE methods either underutilize or naïvely fuse Doppler signatures with spatial magnitude, disregarding their distinct physical semantics. As a result, non-human Doppler signatures can be misinterpreted as human motion cues, leading to jittery trajectories. We propose \textbf{PULSE}, which converts Doppler signatures into confidence-aware motion prompts and injects them into spatial magnitude reasoning through constrained interactions. By screening Doppler prompts before they influence prediction, PULSE first suppresses spurious spectral motion cues and then uses the screened prompts to stabilize prediction. Across three datasets spanning single- and multi-person settings, PULSE consistently improves pose accuracy and temporal stability, indicating that controlled Doppler prompting is a practical direction for stable mmWave HPE. Codes are available in supplementary materials.

Applications · Chemistry, Physics, and Earth Sciences

Yi Zhang, Peng Wang, Difan Zou

Diffusion models show growing promise for generative modeling of physical systems, but enforcing partial differential equation (PDE) constraints directly is infeasible during the stochastic denoising process. Current methods apply constraints to the expected clean sample, incurring a Jensen’s Gap that forces a trade-off between PDE satisfaction and generative accuracy. To bridge this gap, we propose Physics-Informed Distillation of Diffusion Models (PIDDM), a simple yet effective post-hoc distillation strategy that enforces PDE constraints after training. PIDDM enables fast single-step generation while improving both physical consistency and sample quality, supporting forward/inverse problems and reconstruction from partial observations. Extensive experiments across PDE benchmarks show PIDDM outperforms recent baselines, such as PIDM, DiffusionPDE, and ECI-sampling, in both accuracy and constraint satisfaction, with lower computation and minimal hyperparameter tuning, offering a more efficient pathway to physics-informed diffusion models.

Applications · Chemistry, Physics, and Earth Sciences

Zhaoxin Yu, Nan Xu, Kun Chen, Jiahao Zhao, Lei Wang, Wenji Mao

With the continuous advancement of reasoning abilities in Large Language Models (LLMs), their application to scientific reasoning tasks has gained significant research attention. Current research primarily emphasizes boosting LLMs' performances on scientific QA benchmarks by training on larger, more comprehensive datasets with extended reasoning chains. However, these approaches neglect the essence of scientific reasoning process -- logicality, which is the rational foundation to ensure the validity of reasoning steps leading to reliable conclusions. In this work, we make the first systematic investigation into the internal logicality underlying LLM scientific reasoning, and develop a scientific logicality enriched methodology, including a set of assessment criteria and data sampling methods for logicality-guided training, to improve the logical faithfulness as well as task performance. Further, we take physics, characterized by its diverse logical structures and formalisms, as an exemplar discipline to practise the above methodology. For data construction, we extract scientific problems from academic literature and sample a high-quality dataset exhibiting strong logicality. Experiments based on three different backbone LLMs reveal that: 1) the training data we constructed can effectively improve the scientific logicality in LLM reasoning; and 2) the enriched scientific logicality plays a critical role in solving scientific problems.

Applications · Chemistry, Physics, and Earth Sciences

Luca Anthony Thiede, Abdulrahman Aldossary, Andreas Burger, Jorge Campos-Gonzalez-Angulo, Alex Zook, Melisa Alkan, KOHEI NAKAJI, Jérôme F. Gonthier, Taylor Patti, Mohammad Vakili 等

Density functional theory (DFT) is the most widely used method for calculating molecular properties; however, its accuracy is often insufficient for quantitative predictions. Coupled cluster (CC) theory is the most successful method for achieving accuracy beyond DFT and predicting properties that closely align with experiment. It is known as the ``gold standard'' of quantum chemistry. Unfortunately, the high computational cost of CC limits its widespread applicability. In this work, we present the Molecular Orbital Learning Model (MoLe), an equivariant machine learning model that directly predicts CC's core mathematical objects, the excitation amplitudes, from the mean-field Hartree-Fock molecular orbitals as inputs. We test various aspects of our model and demonstrate its very high data efficiency and remarkable out-of-distribution generalization to larger molecules and off-equilibrium geometries, despite being trained only on small equilibrium geometries. Finally, we also examine its ability to reduce the number of cycles required to converge CC calculations. MoLe can set the foundations for high-accuracy wavefunction-based ML architectures to accelerate molecular design and complement force-field approaches.

Reinforcement Learning · Deep RL

John Wikman, Alexandre Proutiere, David Broman

In standard reinforcement learning (RL) settings, the interaction between the agent and the environment is typically modeled as a Markov decision process (MDP), which assumes that the agent observes the system state instantaneously, selects an action without delay, and executes it immediately. In real-world dynamic environments, such as cyber-physical systems, this assumption often breaks down due to delays in the interaction between the agent and the system. These delays can vary stochastically over time and are typically _unobservable_ when deciding on an action. Existing methods deal with this uncertainty conservatively by assuming a known fixed upper bound on the delay, even if the delay is often much lower. In this work, we introduce the _interaction layer_, a general framework that enables agents to adaptively handle unobservable and time-varying delays. Specifically, the agent generates a matrix of possible future actions, anticipating a horizon of potential delays, to handle both unpredictable delays and lost action packets sent over networks. Building on this framework, we develop a model-based algorithm, _Actor-Critic with Delay Adaptation (ACDA)_, which dynamically adjusts to delay patterns. Our method significantly outperforms state-of-the-art approaches across a wide range of locomotion benchmark environments, including real-world measured delays.

Deep Learning · Foundation Models

Xindi Wu, Despoina Paschalidou, Jun Gao, Antonio Torralba, Laura Leal-Taixé, Olga Russakovsky, Sanja Fidler, Jonathan Lorraine

Despite the rapid progress of video generation models, the role of data in influencing motion is poorly understood. We present Motive (MOTIon attribution for Video gEneration), a motion-centric, gradient-based data attribution framework that scales to modern, large, high-quality video datasets and models. We use this to study which fine-tuning clips improve or degrade temporal dynamics. Motive isolates temporal dynamics from static appearance via motion-weighted loss masks, yielding efficient and scalable motion-specific influence computation. On text-to-video models, Motive identifies clips that strongly affect motion and guides data curation that improves temporal consistency and physical plausibility. With Motive-selected high-influence data, we improve both motion smoothness and dynamic degree on VBench, achieving a 74.1% human preference win rate compared with the pretrained base model. To our knowledge, this is the first framework to attribute motion rather than visual appearance in video generative models and to use it to curate fine-tuning data.

Applications · Chemistry, Physics, and Earth Sciences

Ge Yan, SHANCHUAN LI, Yuxuan Du

Quantum error correction (QEC) is essential for enabling quantum advantages, with decoding as a central algorithmic primitive. Owing to its importance and intrinsic difficulty, substantial effort has been made to QEC decoder design, among which neural decoders have recently emerged as a promising data-driven paradigm. Despite this progress, practical deployment remains hindered by a fundamental accuracy–latency tradeoff, often on the microsecond timescale. To address this challenge, here we revisit neural decoders for surface-code decoding under explicit accuracy–latency constraints, considering code distances up to $d=9$ (161 physical qubits). We unify and redesign representative neural decoders into five architectural paradigms and develop an end-to-end compression pipeline to evaluate their deployability and performance on FPGA hardware. Through systematic experiments, we reveal several previously underexplored insights: (i) near-term decoding performance is driven more by data scale than architectural complexity; (ii) appropriate inductive bias is essential for achieving high decoding accuracy; and (iii) INT4 quantization is a prerequisite for meeting microsecond-scale latency requirements on FPGAs. Together, these findings provide concrete guidance toward scalable and real-time neural QEC decoding.

General Machine Learning · Evaluation

Chuhan Li, Rilyn Han, Joy Hsu, Yongyuan Liang, Rajiv Dhawan, Jiajun Wu, Ming-Hsuan Yang, Xin (Eric) Wang

A core aspect of human perception is *situated awareness*, the ability to relate ourselves to the surrounding physical environment and reason over possible actions in context. However, most existing benchmarks for multimodal foundation models (MFMs) emphasize **environment-centric** spatial relations (relations among objects in a scene), while largely overlooking **observer-centric** relationships that require reasoning relative to agent's viewpoint, pose, and motion. To bridge this gap, we introduce SAW-Bench (**S**ituated **A**wareness in the Real **W**orld), a novel benchmark for evaluating egocentric situated awareness using real-world videos. SAW-Bench comprises 786 self-recorded videos captured with Ray-Ban Meta (Gen 2) smart glasses spanning diverse indoor and outdoor environments, and over 2071 *human-annotated* question-answer pairs. It probes a model’s observer–environment understanding with *six* different awareness tasks. Our comprehensive evaluation reveals a human-model performance gap of 31.97%, even with the best-performing MFM, Gemini 3 Flash. Beyond this gap, our in-depth analysis uncovers several notable findings; for example, while models can exploit partial geometric cues in egocentric videos, they often fail to infer a coherent camera geometry, leading to systematic spatial reasoning errors. We position SAW-Bench as a benchmark for situated spatial intelligence, moving beyond passive observation to understanding physically grounded, observer-centric dynamics.

Applications · Robotics

Parv Kapoor, Akila Ganlath, Michael Clifford, Changliu Liu, Sebastian Scherer, Eunsuk Kang

Recent advances in end-to-end, multi-task robot policies based on transformer models have demonstrated impressive generalization to real-world embodied navigation tasks. Trained on vast datasets of simulated and real-world trajectories, these policies map multimodal observations directly to action sequences for physical execution. Despite promising real-world capabilities, these models are still data-driven and, therefore, lack explicit notions of behavioral correctness. We address this gap by introducing **SafeDec**, a constrained decoding framework for autoregressive, transformer-based robot navigation policies that enforces safety specifications expressed as Signal Temporal Logic (STL) formulas. Our method ensures that generated actions provably satisfy STL specifications under assumed dynamics at runtime without retraining while remaining agnostic of the underlying policy. We evaluate **SafeDec** on tasks from the CHORES benchmark for state-of-the-art embodied navigation policies across hundreds of procedurally generated environments and show that our decoding-time interventions are useful not only for filtering unsafe actions but also for conditional action generation. Videos are available at constrained-robot-fms.github.io.

Applications · Chemistry, Physics, and Earth Sciences

Thomas Savary, François Rozet, Gilles Louppe

Bayesian filtering is a well-known problem that aims to estimate plausible states of a dynamical system from observations. Among existing approaches to solve this problem, particles filters are theoretically exact for non-linear dynamics and observations, but suffer from poor scalability in high dimensions. In this work, we show that diffusion-based emulators of dynamical systems can be used to implement, without additional training, an optimal variant of particle filters that has remained largely unexplored due to implementation challenges with classical numerical solvers. Experiments on nonlinear chaotic systems, including atmospheric dynamics, demonstrate that the proposed approach successfully scales particle filtering to high-dimensional settings.

Applications · Computer Vision

Litao Guo, Jinsong Zhou, Shuaibo Li, Man CHEN, Xinli Xu, Zixin Zhang, Harold Haodong Chen, YINGCONG CHEN

Multimodal Large Language Models (MLLMs) have demonstrated exceptional proficiency in standard text extraction, but they encounter significant challenges when confronting real-world implicit text. Such content typically contains malicious information, intentionally concealed through physical deformation, visual camouflage, or cognitive suggestion. These concealment techniques circumvent content moderation systems and pose severe risks to user safety. To bridge the research gap in text recognition under real-world adversarial scenarios, we define the task of Implicit Text Reasoning and introduce ImpText-Bench, a meticulously constructed benchmark. Extensive evaluations on this benchmark reveal significant vulnerability in current systems; even advanced proprietary models achieve a maximum Text Match Score of only 35.79\%. In response, we propose ImpText-Reader, a tool-augmented framework. It employs a three-stage training strategy utilizing capability-boundary data to collaboratively optimize tool selection and semantic reasoning, thereby effectively extracting hidden text. Extensive experiments demonstrate that our approach achieves SOTA performance, significantly enhancing model robustness in adversarial environments.

Applications · Chemistry, Physics, and Earth Sciences

Panagiotis Antoniadis, Beatrice Pavesi, Ole Winther, Simon Olsson

Molecular dynamics (MD) is a central computational tool in physics, chemistry, and biology, enabling quantitative prediction of experimental observables as expectations over high-dimensional molecular distributions such as Boltzmann distributions and transition densities. However, conventional MD is fundamentally limited by the high computational cost required to generate independent samples. Generative molecular dynamics (GenMD) has recently emerged as an alternative, learning surrogates of molecular distributions either from data or through interaction with energy models. While these methods enable efficient sampling, their transferability across molecular systems is often limited. In this work, we show that incorporating auxiliary sources of information can improve the data efficiency and generalization of transferable implicit transfer operators (TITO) for molecular dynamics. We find that coarse-grained TITO models are substantially more data-efficient than Boltzmann emulators, and that incorporating protein language model (PLM) embeddings further improves out-of-distribution generalization. Our approach, PLaTITO, achieves state-of-the-art performance on equilibrium sampling benchmarks for out-of-distribution protein systems, including fast-folding proteins. We further study the impact of additional conditioning signals---such as structural embeddings, temperature, and large-language-model-derived embeddings---on model performance.

Applications · Health / Medicine

Rituparna Datta, Zihan Guan, Baltazar Espinoza, Yiqi Su, Priya Pitre, Srini Venkatramanan, Naren Ramakrishnan, Anil Vullikanti

Epidemic modeling is essential for public health planning, yet traditional approaches rely on fixed model classes that require manual redesign as pathogens, policies, and scenario assumptions evolve. We introduce EpiAgent, an agentic framework that automatically synthesizes, calibrates, verifies, and refines epidemiological simulators by modeling disease progression as an iterative program synthesis problem. A central design choice is an explicit epidemiological flow graph intermediate representation that links scenario specifications to model structure and enables strong, modular correctness checks before code is generated. Verified flow graphs are then compiled into mechanistic models supporting interpretable parameter learning under physical and epidemiological constraints. Evaluation on epidemiological scenario case studies demonstrates that EpiAgent captures complex growth dynamics and produces epidemiologically consistent counterfactual projections across varying vaccination and immune escape assumptions. Our results show that the agentic feedback loop prevents degeneration and significantly accelerates convergence toward valid models by mimicking professional expert workflows.

Applications · Health / Medicine

Zheng Zhang, Hao Tang, Yingying Hu, zhanli hu, Jing Qin

Low-count Positron Emission Tomography (PET) reconstruction is severely hindered by the dissipative nature of prevailing generative models, where the inherent phase-space contraction leads to the numerical extinction (``wash-out'') of weak but diagnostically critical lesion signals. To overcome this geometric limitation, we propose \textbf{FlowPET}, a physics-informed framework that reformulates reconstruction as volume-preserving transport in a symplectic phase space. By parameterizing the posterior dynamics via a Separable Hamiltonian System, our approach guarantees a divergence-free vector field by construction, theoretically immunizing weak signals against probability mass collapse. To steer this conservative flow, we introduce conjugate boundary conditions based on the Range-Null space decomposition of the PET operator; this strictly enforces data consistency in the range space while confining stochastic uncertainty injection to the unobserved null space. We train the model via symplectic flow matching and perform inference using a symplectic leapfrog integrator. Extensive experiments on BrainWeb, clinical pediatric, and UDPET datasets demonstrate that \textbf{FlowPET} not only surpasses state-of-the-art deterministic and stochastic baselines in SSIM and PSNR but, more crucially, exhibits superior recovery of low-contrast lesions. The results confirm that imposing Hamiltonian structural constraints offers a robust geometric safeguard for medical inverse problems in high-noise regimes.

Applications · Computer Vision

Woojung Han, Seil Kang, Youngjun Jun, Min-Hung Chen, Fu-En Yang, Seong Jae Hwang

Video diffusion models can generate visually stunning content, yet frequently produce motion that violates physical laws, objects accelerate implausibly or vanish mid-trajectory. We reveal a surprising finding: a 2-step generation often exhibits better physical consistency than a 50-step output from the same model. Through spectral analysis, we trace this to phase erosion during denoising, motion dynamics are $8.5\times$ more sensitive to phase corruption than magnitude, yet the refinement process progressively destroys this critical component. Building on this insight, we propose PhaseLock, a training-free framework that locks motion dynamics to fast inference priors. Rather than requiring 50 steps to establish physics, PhaseLock extracts a motion prior from just 2 steps and enforces it onto high-fidelity generation via Latent Delta Guidance. This decouples physical consistency from visual refinement, ensuring the final output remains grounded in valid trajectories. PhaseLock achieves strong physical consistency with negligible overhead ($1.06\times$ time, $1.02\times$ memory), eliminating the need for expensive external guidance methods ($\sim5\times$ time).

Applications · Chemistry, Physics, and Earth Sciences

Yunyang Li, Lin Huang, Luojia Xia, Wenhe Zhang, Mark Gerstein

Generative models for 3D molecular conformations must respect Euclidean symmetries and concentrate probability mass on thermodynamically favorable, mechanically stable structures. However, E(3)-equivariant diffusion models often reproduce biases from semi-empirical training data rather than capturing the equilibrium distribution of a high-fidelity Hamiltonian. While physics-based guidance can correct this, it faces two computational bottlenecks: expensive quantum-chemical evaluations (e.g., DFT) and the need to repeat such queries at every sampling step. We present Elign, a post-training framework that amortizes both costs. First, we replace expensive DFT evaluations with a faster, pretrained foundational machine-learning force field (MLFF) to provide physical signals. Second, we eliminate repeated run-time queries by shifting physical steering to the training phase. To achieve the second amortization, we formulate reverse diffusion as a reinforcement learning problem and introduce Force--Energy Disentangled Group Relative Policy Optimization (FED-GRPO) to fine-tune the denoising policy. FED-GRPO includes a potential-based energy reward and a force-based stability reward, which are optimized and group-normalized independently. Experiments show that Elign generates conformations with lower gold-standard DFT energies and forces, while improving stability. Crucially, inference remains as fast as unguided sampling, since no energy evaluations are required during generation.

Applications · Time Series

Aoyu Liu, Liming Wei, YAYING ZHANG

Most spatio-temporal forecasting models assume in-distribution data and can degrade sharply under non-stationary environments. Existing methods for handling distribution shift largely rely on discrete graph inference, making it difficult to disentangle universal dynamics from environment-specific changes and to respect the continuous physical nature of spatio-temporal fields. To this end, we propose STPDE, a general framework that reformulates spatio-temporal dynamics as the evolution of inhomogeneous partial differential equations. STPDE explicitly decomposes dynamics into an Invariant Diffusion Operator that captures universal mechanisms and an Environment Basis Manifold that parameterizes local heterogeneous media. We show that the Green's function of the Laplacian can be effectively approximated by linear attention, enabling global diffusion at scale. Combined with stochastic environment perturbations, STPDE improves robustness under heterogeneous and shifting environments. Extensive experiments on in-distribution forecasting, out-of-distribution generalization, few-shot cross-city transfer, and continual learning demonstrate consistent improvements over state-of-the-art baselines with competitive computational efficiency.

Applications · Chemistry, Physics, and Earth Sciences

Stefan Pranger, Bernhard Ramsauer, Oliver Hofmann, Bettina Könighofer

Scanning tunneling microscopy (STM) enables precise manipulation of individual atoms and molecules, offering a pathway to constructing nanoscale assemblies with rich quantum mechanical behavior. Despite its potential, STM-based fabrication remains limited by the inherent complexity of manipulation procedures and the extensive manual effort required. In this work, we take a substantial step toward autonomous manufacturing with STMs by introducing a novel AI-based planning framework for molecular assembly and a high-fidelity simulation environment. Our framework computes collision-free assembly plans that minimize the total distance traveled by molecules. Given an assignment of molecules to target positions, satisfiability solving is used to compute execution schedules in which each molecule has an empty corridor available when it is scheduled to move. Reinforcement learning (RL) agents then execute sequences of STM actions to manipulate molecules to their targets. We further introduce NanoAssemblyGym, a high-fidelity simulation environment for molecular manipulation built on the Gymnasium API, allowing seamless integration with existing RL libraries and workflows. Using NanoAssemblyGym, we demonstrate autonomous assembly of structures containing up to 420 molecules.