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Optimization · Zero-order and Black-box Optimization

Scott Sussex, Pier Giuseppe Sessa, Anastasia Makarova, Andreas Krause

In Causal Bayesian Optimization (CBO), an agent intervenes on a structural causal model with known graph but unknown mechanisms to maximize a downstream reward variable. In this paper, we consider the generalization where other agents or external events also intervene on the system, which is key for enabling adaptiveness to non-stationarities such as weather changes, market forces, or adversaries. We formalize this generalization of CBO as Adversarial Causal Bayesian Optimization (ACBO) and introduce the first algorithm for ACBO with bounded regret: Causal Bayesian Optimization with Multiplicative Weights (CBO-MW). Our approach combines a classical online learning strategy with causal modeling of the rewards. To achieve this, it computes optimistic counterfactual reward estimates by propagating uncertainty through the causal graph. We derive regret bounds for CBO-MW that naturally depend on graph-related quantities. We further propose a scalable implementation for the case of combinatorial interventions and submodular rewards. Empirically, CBO-MW outperforms non-causal and non-adversarial Bayesian optimization methods on synthetic environments and environments based on real-word data. Our experiments include a realistic demonstration of how CBO-MW can be used to learn users' demand patterns in a shared mobility system and reposition vehicles in strategic areas.

Probabilistic Methods · Bayesian Models and Methods

Luong-Ha Nguyen, James-A. Goulet

With few exceptions, neural networks have been relying on backpropagation and gradient descent as the inference engine in order to learn the model parameters, because closed-form Bayesian inference for neural networks has been considered to be intractable. In this paper, we show how we can leverage the tractable approximate Gaussian inference's (TAGI) capabilities to infer hidden states, rather than only using it for inferring the network's parameters. One novel aspect is that it allows inferring hidden states through the imposition of constraints designed to achieve specific objectives, as illustrated through three examples: (1) the generation of adversarial-attack examples, (2) the usage of a neural network as a black-box optimization method, and (3) the application of inference on continuous-action reinforcement learning. In these three examples, the constrains are in (1), a target label chosen to fool a neural network, and in (2 and 3) the derivative of the network with respect to its input that is set to zero in order to infer the optimal input values that are either maximizing or minimizing it. These applications showcase how tasks that were previously reserved to gradient-based optimization approaches can now be approached with analytically tractable inference.

Deep Learning · Large Language Models

Tennison Liu, Nicolás Astorga, Nabeel Seedat, Mihaela van der Schaar

Bayesian optimization (BO) is a powerful approach for optimizing complex and expensive-to-evaluate black-box functions. Its importance is underscored in many applications, notably including hyperparameter tuning, but its efficacy depends on efficiently balancing exploration and exploitation. While there has been substantial progress in BO methods, striking this balance remains a delicate process. In this light, we present \texttt{LLAMBO}, a novel approach that integrates the capabilities of Large Language Models (LLM) within BO. At a high level, we frame the BO problem in natural language, enabling LLMs to iteratively \emph{propose} and \emph{evaluate} promising solutions conditioned on historical evaluations. More specifically, we explore how combining contextual understanding, few-shot learning proficiency, and domain knowledge of LLMs can improve model-based BO. Our findings illustrate that \texttt{LLAMBO} is effective at zero-shot warmstarting, and enhances surrogate modeling and candidate sampling, especially in the early stages of search when observations are sparse. Our approach is performed in context and does not require LLM finetuning. Additionally, it is modular by design, allowing individual components to be integrated into existing BO frameworks, or function cohesively as an end-to-end method. We empirically validate \texttt{LLAMBO}'s efficacy on the problem of hyperparameter tuning, highlighting strong empirical performance across a range of diverse benchmarks, proprietary, and synthetic tasks.

Optimization · Zero-order and Black-box Optimization

Quoc Phong Nguyen, Wan Theng Ruth Chew, Le Song, Bryan Kian Hsiang Low, Patrick Jaillet

Though some research efforts have been dedicated to constrained Bayesian optimization (BO), there remains a notable absence of a principled approach with a theoretical performance guarantee in the decoupled setting. Such a setting involves independent evaluations of the objective function and constraints at different inputs, and is hence a relaxation of the commonly-studied coupled setting where functions must be evaluated together. As a result, the decoupled setting requires an adaptive selection between evaluating either the objective function or a constraint, in addition to selecting an input (in the coupled setting). This paper presents a novel constrained BO algorithm with a provable performance guarantee that can address the above relaxed setting. Specifically, it considers the fundamental trade-off between exploration and exploitation in constrained BO, and, interestingly, affords a noteworthy connection to active learning. The performance of our proposed algorithms is also empirically evaluated using several synthetic and real-world optimization problems.

Optimization · Zero-order and Black-box Optimization

Anthony Bardou, Patrick Thiran, Thomas Begin

Bayesian Optimization (BO) is typically used to optimize an unknown function $f$ that is noisy and costly to evaluate, by exploiting an acquisition function that must be maximized at each optimization step. Even if provably asymptotically optimal BO algorithms are efficient at optimizing low-dimensional functions, scaling them to high-dimensional spaces remains an open problem, often tackled by assuming an additive structure for $f$. By doing so, BO algorithms typically introduce additional restrictive assumptions on the additive structure that reduce their applicability domain. This paper contains two main contributions: (i) we relax the restrictive assumptions on the additive structure of $f$ without weakening the maximization guarantees of the acquisition function, and (ii) we address the over-exploration problem for decentralized BO algorithms. To these ends, we propose DuMBO, an asymptotically optimal decentralized BO algorithm that achieves very competitive performance against state-of-the-art BO algorithms, especially when the additive structure of $f$ comprises high-dimensional factors.

Zhuoer Xu, Zhangxuan Gu, Jianping Zhang, Shiwen Cui, Changhua Meng, Weiqiang Wang

Deep neural networks are vulnerable to adversarial examples, dictating the imperativeness to test the model's robustness before deployment. Transfer-based attackers craft adversarial examples against surrogate models and transfer them to victim models deployed in the black-box situation. To enhance the adversarial transferability, structure-based attackers adjust the backpropagation path to avoid the attack from overfitting the surrogate model. However, existing structure-based attackers fail to explore the convolution module in CNNs and modify the backpropagation graph heuristically, leading to limited effectiveness. In this paper, we propose backPropagation pAth Search (PAS), solving the aforementioned two problems. We first propose SkipConv to adjust the backpropagation path of convolution by structural reparameterization. To overcome the drawback of heuristically designed backpropagation paths, we further construct a DAG-based search space, utilize one-step approximation for path evaluation and employ Bayesian Optimization to search for the optimal path. We conduct comprehensive experiments in a wide range of transfer settings, showing that PAS improves the attack success rate by a huge margin for both normally trained and defense models.

Applications/Chemistry and Drug Discovery

Ryan-Rhys Griffiths, Leo Klarner, Henry Moss, Aditya Ravuri, Sang Truong, Yuanqi Du, Samuel Stanton, Gary Tom, Bojana Rankovic, Arian Jamasb 等

We introduce GAUCHE, an open-source library for GAUssian processes in CHEmistry. Gaussian processes have long been a cornerstone of probabilistic machine learning, affording particular advantages for uncertainty quantification and Bayesian optimisation. Extending Gaussian processes to molecular representations, however, necessitates kernels defined over structured inputs such as graphs, strings and bit vectors. By providing such kernels in a modular, robust and easy-to-use framework, we seek to enable expert chemists and materials scientists to make use of state-of-the-art black-box optimization techniques. Motivated by scenarios frequently encountered in practice, we showcase applications for GAUCHE in molecular discovery, chemical reaction optimisation and protein design. The codebase is made available at https://github.com/leojklarner/gauche.

Probabilistic Methods/Variational Inference

Kyurae Kim, Jisu Oh, Kaiwen Wu, Yian Ma, Jacob Gardner

We provide the first convergence guarantee for black-box variational inference (BBVI) with the reparameterization gradient. While preliminary investigations worked on simplified versions of BBVI (e.g., bounded domain, bounded support, only optimizing for the scale, and such), our setup does not need any such algorithmic modifications. Our results hold for log-smooth posterior densities with and without strong log-concavity and the location-scale variational family. Notably, our analysis reveals that certain algorithm design choices commonly employed in practice, such as nonlinear parameterizations of the scale matrix, can result in suboptimal convergence rates. Fortunately, running BBVI with proximal stochastic gradient descent fixes these limitations and thus achieves the strongest known convergence guarantees. We evaluate this theoretical insight by comparing proximal SGD against other standard implementations of BBVI on large-scale Bayesian inference problems.

Optimization/Zero-order and Black-box Optimization

Kamil Dreczkowski, Antoine Grosnit, Haitham Bou Ammar

This paper introduces a modular framework for Mixed-variable and Combinatorial Bayesian Optimization (MCBO) to address the lack of systematic benchmarking and standardized evaluation in the field. Current MCBO papers often introduce non-diverse or non-standard benchmarks to evaluate their methods, impeding the proper assessment of different MCBO primitives and their combinations. Additionally, papers introducing a solution for a single MCBO primitive often omit benchmarking against baselines that utilize the same methods for the remaining primitives. This omission is primarily due to the significant implementation overhead involved, resulting in a lack of controlled assessments and an inability to showcase the merits of a contribution effectively.To overcome these challenges, our proposed framework enables an effortless combination of Bayesian Optimization components, and provides a diverse set of synthetic and real-world benchmarking tasks. Leveraging this flexibility, we implement 47 novel MCBO algorithms and benchmark them against seven existing MCBO solvers and five standard black-box optimization algorithms on ten tasks, conducting over 4000 experiments. Our findings reveal a superior combination of MCBO primitives outperforming existing approaches and illustrate the significance of model fit and the use of a trust region. We make our MCBO library available under the MIT license at \url{https://github.com/huawei-noah/HEBO/tree/master/MCBO}.

Optimization/Zero-order and Black-box Optimization

Shuang Li, Ke Li, Wei Li

Bayesian Optimization (BO) is a powerful method for tackling expensive black-box optimization problems. As a sequential model-based optimization strategy, BO iteratively explores promising solutions until a predetermined budget, either iterations or time, is exhausted. The decision on when to terminate BO significantly influences both the quality of solutions and its computational efficiency. In this paper, we propose a simple, yet theoretically grounded, two-step method for automatically terminating BO. Our core concept is to proactively identify if the search is within a convex region by examining previously observed samples. BO is halted once the local regret within this convex region falls below a predetermined threshold. To enhance numerical stability, we propose an approximation method for calculating the termination indicator by solving a bilevel optimization problem. We conduct extensive empirical studies on diverse benchmark problems, including synthetic functions, reinforcement learning, and hyperparameter optimization. Experimental results demonstrate that our proposed method saves up to $\approx 80\%$ computational budget yet is with an order of magnitude smaller performance degradation, comparing against the other peer methods. In addition, our proposed termination method is robust in terms of the setting of its termination criterion.

Optimization/Zero-order and Black-box Optimization

Sebastian Ament, Samuel Daulton, David Eriksson, Maximilian Balandat, Eytan Bakshy

Expected Improvement (EI) is arguably the most popular acquisition function in Bayesian optimization and has found countless successful applications, but its performance is often exceeded by that of more recent methods. Notably, EI and its variants, including for the parallel and multi-objective settings, are challenging to optimize because their acquisition values vanish numerically in many regions. This difficulty generally increases as the number of observations, dimensionality of the search space, or the number of constraints grow, resulting in performance that is inconsistent across the literature and most often sub-optimal. Herein, we propose LogEI, a new family of acquisition functions whose members either have identical or approximately equal optima as their canonical counterparts, but are substantially easier to optimize numerically. We demonstrate that numerical pathologies manifest themselves in “classic” analytic EI, Expected Hypervolume Improvement (EHVI), as well as their constrained, noisy, and parallel variants, and propose corresponding reformulations that remedy these pathologies. Our empirical results show that members of the LogEI family of acquisition functions substantially improve on the optimization performance of their canonical counterparts and surprisingly, are on par with or exceed the performance of recent state-of-the-art acquisition functions, highlighting the understated role of numerical optimization in the literature.

Optimization/Zero-order and Black-box Optimization

Carl Hvarfner, Erik Hellsten, Frank Hutter, Luigi Nardi

Gaussian processes are the model of choice in Bayesian optimization and active learning. Yet, they are highly dependent on cleverly chosen hyperparameters to reach their full potential, and little effort is devoted to finding good hyperparameters in the literature. We demonstrate the impact of selecting good hyperparameters for GPs and present two acquisition functions that explicitly prioritize hyperparameter learning. Statistical distance-based Active Learning (SAL) considers the average disagreement between samples from the posterior, as measured by a statistical distance. SAL outperforms the state-of-the-art in Bayesian active learning on several test functions. We then introduce Self-Correcting Bayesian Optimization (SCoreBO), which extends SAL to perform Bayesian optimization and active learning simultaneously. SCoreBO learns the model hyperparameters at improved rates compared to vanilla BO, while outperforming the latest Bayesian optimization methods on traditional benchmarks. Moreover, we demonstrate the importance of self-correction on atypical Bayesian optimization tasks.

Optimization

Yueming LYU

Black-box optimization has gained great attention for its success in recent applications. However, scaling up to high-dimensional problems with good query efficiency remains challenging. This paper proposes a novel Rank-1 Lattice Targeted Sampling (RLTS) technique to address this issue. Our RLTS benefits from random rank-1 lattice Quasi-Monte Carlo, which enables us to perform fast local exact Gaussian processes (GP) training and inference with $O(n \log n)$ complexity w.r.t. $n$ batch samples. Furthermore, we developed a fast coordinate searching method with $O(n \log n)$ time complexity for fast targeted sampling. The fast computation enables us to plug our RLTS into the sampling phase of stochastic optimization methods. This improves the query efficiency while scaling up to higher dimensional problems than Bayesian optimization. Moreover, to construct rank-1 lattices efficiently, we proposed a closed-form construction. Extensive experiments on challenging benchmark test functions and black-box prompt fine-tuning for large language models demonstrate the query efficiency of our RLTS technique.

Optimization/Zero-order and Black-box Optimization

Sebastian Tay, Chuan Sheng Foo, Daisuke Urano, Richalynn Leong, Bryan Kian Hsiang Low

We introduce the problem of Bayesian optimization with cost-varying variable subsets (BOCVS) where in each iteration, the learner chooses a subset of query variables and specifies their values while the rest are randomly sampled. Each chosen subset has an associated cost. This presents the learner with the novel challenge of balancing between choosing more informative subsets for more directed learning versus leaving some variables to be randomly sampled to reduce incurred costs. This paper presents a novel Gaussian process upper confidence bound-based algorithm for solving the BOCVS problem that is provably no-regret. We analyze how the availability of cheaper control sets helps in exploration and reduces overall regret. We empirically show that our proposed algorithm can find significantly better solutions than comparable baselines with the same budget.

Applications/Chemistry and Drug Discovery

Yiheng Zhu, Jialu Wu, Chaowen Hu, Jiahuan Yan, kim hsieh, Tingjun Hou, Jian Wu

Many crucial scientific problems involve designing novel molecules with desired properties, which can be formulated as a black-box optimization problem over the *discrete* chemical space. In practice, multiple conflicting objectives and costly evaluations (e.g., wet-lab experiments) make the *diversity* of candidates paramount. Computational methods have achieved initial success but still struggle with considering diversity in both objective and search space. To fill this gap, we propose a multi-objective Bayesian optimization (MOBO) algorithm leveraging the hypernetwork-based GFlowNets (HN-GFN) as an acquisition function optimizer, with the purpose of sampling a diverse batch of candidate molecular graphs from an approximate Pareto front. Using a single preference-conditioned hypernetwork, HN-GFN learns to explore various trade-offs between objectives. We further propose a hindsight-like off-policy strategy to share high-performing molecules among different preferences in order to speed up learning for HN-GFN. We empirically illustrate that HN-GFN has adequate capacity to generalize over preferences. Moreover, experiments in various real-world MOBO settings demonstrate that our framework predominantly outperforms existing methods in terms of candidate quality and sample efficiency. The code is available at https://github.com/violet-sto/HN-GFN.

Optimization/Zero-order and Black-box Optimization

Zhongxiang Dai, Quoc Phong Nguyen, Sebastian Tay, Daisuke Urano, Richalynn Leong, Bryan Kian Hsiang Low, Patrick Jaillet

Many real-world experimental design problems (a) evaluate multiple experimental conditions in parallel and (b) replicate each condition multiple times due to large and heteroscedastic observation noise. Given a fixed total budget, this naturally induces a trade-off between evaluating more unique conditions while replicating each of them fewer times vs. evaluating fewer unique conditions and replicating each more times. Moreover, in these problems, practitioners may be risk-averse and hence prefer an input with both good average performance and small variability. To tackle both challenges, we propose the Batch Thompson Sampling for Replicable Experimental Design (BTS-RED) framework, which encompasses three algorithms. Our BTS-RED-Known and BTS-RED-Unknown algorithms, for, respectively, known and unknown noise variance, choose the number of replications adaptively rather than deterministically such that an input with a larger noise variance is replicated more times. As a result, despite the noise heteroscedasticity, both algorithms enjoy a theoretical guarantee and are asymptotically no-regret. Our Mean-Var-BTS-RED algorithm aims at risk-averse optimization and is also asymptotically no-regret. We also show the effectiveness of our algorithms in two practical real-world applications: precision agriculture and AutoML.

Optimization/Zero-order and Black-box Optimization

Zhongxiang Dai, Gregory Kang Ruey Lau, Arun Verma, YAO SHU, Bryan Kian Hsiang Low, Patrick Jaillet

Kernelized bandits, also known as Bayesian optimization (BO), has been a prevalent method for optimizing complicated black-box reward functions. Various BO algorithms have been theoretically shown to enjoy upper bounds on their cumulative regret which are sub-linear in the number $T$ of iterations, and a regret lower bound of $\Omega(\sqrt{T})$ has been derived which represents the unavoidable regrets for any classical BO algorithm. Recent works on quantum bandits have shown that with the aid of quantum computing, it is possible to achieve tighter regret upper bounds better than their corresponding classical lower bounds. However, these works are restricted to either multi-armed or linear bandits, and are hence not able to solve sophisticated real-world problems with non-linear reward functions. To this end, we introduce the quantum-Gaussian process-upper confidence bound (Q-GP-UCB) algorithm. To the best of our knowledge, our Q-GP-UCB is the first BO algorithm able to achieve a regret upper bound of $\mathcal{O}(\text{poly}\log T)$, which is significantly smaller than its regret lower bound of $\Omega(\sqrt{T})$ in the classical setting. Moreover, thanks to our novel analysis of the confidence ellipsoid, our Q-GP-UCB with the linear kernel achieves a smaller regret than the quantum linear UCB algorithm from the previous work. We use simulations, as well as an experiment using a real quantum computer, to verify that the theoretical quantum speedup achieved by our Q-GP-UCB is also potentially relevant in practice.

Optimization/Discrete and Combinatorial Optimization

Leonard Papenmeier, Luigi Nardi, Matthias Poloczek

Impactful applications such as materials discovery, hardware design, neural architecture search, or portfolio optimization require optimizing high-dimensional black-box functions with mixed and combinatorial input spaces.While Bayesian optimization has recently made significant progress in solving such problems, an in-depth analysis reveals that the current state-of-the-art methods are not reliable. Their performances degrade substantially when the unknown optima of the function do not have a certain structure. To fill the need for a reliable algorithm for combinatorial and mixed spaces, this paper proposes Bounce that relies on a novel map of various variable types into nested embeddings of increasing dimensionality.Comprehensive experiments show that Bounce reliably achieves and often even improves upon state-of-the-art performance on a variety of high-dimensional problems.

Optimization/Discrete and Combinatorial Optimization

Seunghun Lee, Jaewon Chu, Sihyeon Kim, Juyeon Ko, Hyunwoo Kim

Bayesian optimization is a powerful method for optimizing black-box functions with limited function evaluations. Recent works have shown that optimization in a latent space through deep generative models such as variational autoencoders leads to effective and efficient Bayesian optimization for structured or discrete data. However, as the optimization does not take place in the input space, it leads to an inherent gap that results in potentially suboptimal solutions. To alleviate the discrepancy, we propose Correlated latent space Bayesian Optimization (CoBO), which focuses on learning correlated latent spaces characterized by a strong correlation between the distances in the latent space and the distances within the objective function. Specifically, our method introduces Lipschitz regularization, loss weighting, and trust region recoordination to minimize the inherent gap around the promising areas. We demonstrate the effectiveness of our approach on several optimization tasks in discrete data, such as molecule design and arithmetic expression fitting, and achieve high performance within a small budget.

Optimization/Discrete and Combinatorial Optimization

Xingchen Wan, Pierre Osselin, Henry Kenlay, Binxin Ru, Michael A Osborne, Xiaowen Dong

The increasing availability of graph-structured data motivates the task of optimising over functions defined on the node set of graphs. Traditional graph search algorithms can be applied in this case, but they may be sample-inefficient and do not make use of information about the function values; on the other hand, Bayesian optimisation is a class of promising black-box solvers with superior sample efficiency, but it has scarcely been applied to such novel setups. To fill this gap, we propose a novel Bayesian optimisation framework that optimises over functions defined on generic, large-scale and potentially unknown graphs. Through the learning of suitable kernels on graphs, our framework has the advantage of adapting to the behaviour of the target function. The local modelling approach further guarantees the efficiency of our method. Extensive experiments on both synthetic and real-world graphs demonstrate the effectiveness of the proposed optimisation framework.