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Applications · Computer Vision

Ben Wan, Yan Feng, Zihan Tang, Weizhe Huang, Yuting Zeng, Jia Wang, Tongxuan Liu

DeepSeek-OCR leverages visual–text compression to reduce long-text processing costs and accelerate inference, yet visual tokens remain prone to redundant textual and structural information. Moreover, current token pruning methods for conventional vision–language models (VLMs) fail to preserve textual fidelity due to improper compression mechanisms. By analyzing the decoding process of DeepSeek-OCR, we find that a distinct two-stage reading trajectory: the model initially prioritizes the majority of high-norm tokens, then subsequently redistributes its attention to the remaining ones. Motivated by this insight, we propose *RTPrune*, a two-stage token pruning method tailored for DeepSeek-OCR. In the first stage, we prioritize high-norm visual tokens that capture salient textual and structural information. In the second stage, the remaining tokens are paired and merged based on optimal transport theory to achieve efficient feature aggregation. We further introduce a dynamic pruning ratio that adapts to token similarity and textual density for OCR tasks, enabling a better efficiency–accuracy trade-off. Extensive experiments demonstrate state-of-the-art performance, as evidenced by 99.47\% accuracy and 1.23× faster prefill on OmniDocBench, achieved with 84.25\% token retention when applied to DeepSeek-OCR-Large. Code is released.

Applications · Health / Medicine

Yaowei Jin, Junjie Wang, Cheng Cao, Penglei Wang, Duo An, Qian Shi

Structure-Based Drug Design (SBDD) aims to discover bioactive ligands. Conventional approaches construct probability paths separately in Euclidean and probabilistic spaces for continuous atomic coordinates and discrete chemical categories, leading to a mismatch with the underlying statistical manifolds. We address this issue from an information-geometric perspective by modeling molecules as composite exponential-family distributions and defining generative flows along exponential geodesics under the Fisher–Rao metric. To avoid the instantaneous trajectory collapse induced by geodesics directly targeting Dirac distributions, we propose Evolving Exponential Geodesic Flow for SBDD (EvoEGF-Mol), which replaces static Dirac targets with dynamically concentrating distributions, ensuring stable training via a progressive-parameter-refinement architecture. Our model approaches a reference-level PoseBusters passing rate (93.4%) on CrossDock, demonstrating remarkable geometric precision and interaction fidelity, while outperforming baselines on real-world MolGenBench tasks by recovering bioactive scaffolds and generating candidates that meet established MedChem filters.

General Machine Learning · Causality

Wenxin Chen, Weishen Pan, Kyra Gan, Fei Wang

Comparative evaluation of *multiple* dynamic treatment policies is essential for healthcare and policy decisions, yet conventional longitudinal causal inference methods estimate each in *isolation*, preventing information sharing across counterfactuals. We demonstrate that this separate estimation paradigm induces a structurally uncontrolled second-order bias, inflating finite-sample variance even after standard debiasing with *longitudinal targeted maximum likelihood estimation* (LTMLE). To address this, we propose a policy-aware reparameterization of *Iterative Conditional Expectation* (ICE) Q-functions that enables joint estimation through shared representations. We implement this approach in the **Policy-Encoded Q Network (PEQ-Net)**, an architecture centered on a shared policy encoder. The encoder is trained using kernel mean embeddings, ensuring that the learned representation space reflects population-level policy dissimilarities. After applying an LTMLE correction step, we prove this design imposes a structural constraint on the second-order remainder, thereby stabilizing finite-sample variance. Experiments on semi-synthetic datasets demonstrate that PEQ-Net consistently outperforms existing ICE-based methods, reducing root-mean-square error by 13–62\%.

Xinrui Ruan, Yingfei Wang, Waverly Wei, Jingshen Wang

Semi‑supervised statistical inference plays a key role in biomedical research, where labeled data often have higher quality but are limited due to costly clinical annotation. Yet, existing semi‑supervised statistical inference methods rely heavily on structured variables and strictly matched covariates between labeled and unlabeled datasets -- limitations ill‑suited for the heterogeneity and unstructured nature of real-world biomedical data. Modern biomedical studies increasingly collect unstructured data (clinical notes, patient audio and video recordings), with inconsistent protocols across datasets causing covariate misalignment (for instance, detailed medication histories may be recorded in one study but not another). Recent advances in pre‑trained multimodal large language models (LLMs), which excel at handling unstructured data, present an attractive potential solution. To transform this potential into rigorous semi-supervised statistical inference methods for biomedical research, two key challenges must be addressed: (1) How can we reliably integrate LLMs to enhance semi-supervised inference efficiency without compromising statistical validity? (2) How can those efficiency gains persist despite mismatched covariates between labeled and unlabeled datasets? In this paper, we tackle these challenges by systematically *calibrating pseudo-labels* provided LLMs with a novel *prediction-invariance identification* strategy. Our resulting semi‑supervised inference framework improves parameter estimation efficiency while maintaining full statistical validity, as demonstrated through our theoretical results and illustrated in a case study for identifying key biomarkers in Alzheimer’s disease detection with speech data.

Applications · Time Series

Haoxin Liu, Yichen Zhou, Rajat Sen, B. Aditya Prakash, Abhimanyu Das

We introduce a new context-enriched, multimodal time series forecasting benchmark TimesX. TimesX contains a wide selection of high-quality real-world time series with diverse domains and textual contexts obtained from an automated data generation pipeline, which helps address three main issues of existing multimodal forecasting benchmarks: (1) poor generalization due to the small scale and synthetic nature of benchmark data, (2) very limited types of textual contexts in the benchmarks, and (3) an inability to mitigate data leakage in evaluation. We conduct a thorough empirical study of zero-shot multimodal forecasting approaches on TimesX. Our results suggest that many approaches that perform well on existing benchmarks may fail on TimesX. In contrast, simple ensemble methods that leverage rich textual context accompanying time-series can outperform strong baselines on the TimesX benchmark.

Applications · Robotics

Kunyun Wang, Yuhang Zheng, Jieru Zhao, Yupeng Zheng, Wenchao Ding

Modern robotic policies increasingly rely on action chunking to execute complex tasks in the physical world. While action chunking improves temporal consistency at moderate action frequencies, it becomes insufficient when the action frequency is further increased (e.g., to 60~Hz). At such high frequencies, policies often fail to generate actions that are both temporally smooth and spatially consistent. We address this challenge by shifting high-frequency action learning from the action space to a latent space with variational autoencoder (VAE). This formulation significantly improves both temporal and spatial consistency of high-frequency control. To enable smooth real-time execution, we further introduce Reuse-then-Refine, a chunk-level refine strategy that improves continuity between adjacent action chunks under asynchronous inference. As a result, robots controlled by our policy can execute complex contact-rich tasks continuously, with less pauses and jerky motions. Experiments on three real-world contact-rich robotic tasks show that our approach consistently completes tasks with smooth motions.

Applications · Language, Speech and Dialog

Ziyin Zhang, Zihan Liao, Hang Yu, Peng Di, Rui Wang

The development of high-quality text embeddings is increasingly drifting toward an exclusionary future, defined by three critical barriers: prohibitive computational costs, a narrow linguistic focus that neglects most of the world's languages, and a lack of transparency from closed-source or open-weight models that stifles research. To dismantle these barriers, we introduce ML-Embed, a suite of inclusive and efficient models built upon a new framework: 3-Dimensional Matryoshka Learning (3D-ML). Our framework addresses the computational challenge with comprehensive efficiency across the entire model lifecycle. Beyond the storage benefits of Matryoshka Representation Learning (MRL), we integrate Matryoshka Layer Learning (MLL) for flexible inference-time depth and Matryoshka Embedding Learning (MEL) for enhanced parameter efficiency. To address the linguistic challenge, we curate a massively multilingual dataset and train a suite of models ranging from 140M to 8B parameters. In a direct commitment to transparency, we release all models, data, and code. Extensive evaluation on 430 tasks demonstrates that our models set new records on 9 of 17 evaluated MTEB benchmarks, with particularly strong results in low-resource languages, providing a reproducible blueprint for building globally equitable and computationally efficient AI systems.

Deep Learning · Algorithms

Vladimír Macko, Vladimír Boža

Sparse Matrix-Vector Multiplication (SpMV) is a fundamental operation in the inference of sparse Large Language Models (LLMs). Because existing SpMV methods perform poorly under the low, unstructured sparsity ($30-90\\%$) commonly observed in pruned LLMs, unstructured pruning provides only limited memory reduction and speedup. We propose **DELTA4-SpMV**, a GPU-optimized format and kernel co-designed to reduce storage overhead while remaining compatible with the GPU’s execution model. This enables efficient SpMV for unstructured sparsity without specialized hardware units or precomputation. We identify memory bandwidth as the primary limiting factor of SpMV and analyze the storage overhead of DELTA4. At $50\\%$ sparsity, DELTA4 is the first approach to achieve $1.5\times$ memory reduction and $1.2-1.5\times$ speedup over the dense baseline as well as substantial improvements over other SpMV methods: cuSPARSE ($2.8-13.0\times$), Sputnik ($1.9-2.6\times$), and DASP ($2.2-2.5\times$). An LLM pruned with Wanda to sparsity $50\\%$ requires $1.5\times$ less memory and achieves $1.5\times$ faster inference at fp16 precision. As a result, **unstructured pruning at $50\\%$ sparsity becomes practical** for real-world LLM workloads and **bridges the efficiency gap with structured 2:4 sparsity**.

General Machine Learning · Supervised Learning

Shuai Li, Xinyan Liang, Yuhua Qian, Li Lv

This paper studies a fundamental yet often overlooked premise in evolutionary multi-view classification (EMVC): the impact of label noise on EMVC, such as distorting fitness landscapes shaped by individual fitness values (e.g., test accuracy). Traditional EMVC assumes training labels are noise-free, yet this often fails in practice. As a result, label noise introduces harmful supervision during the training phase, resulting in distorted fitness landscapes and the emergence of fitness evaluation bias (FEB). This bias misguides the evolutionary trajectory, causing the search process to stagnate in local optima. Given that label noise largely stems from the mislabeling of samples near their decision boundaries by human annotators, we thus compared the decision boundaries of human annotators and models, and found discrepancies between the two. Based on this observation, we propose a simple yet effective ``detect-then-calibrate" data purification framework that leverages outlier analysis in the gradient space (i.e., treating outliers as noisy samples) and prototype calibration in the feature space (i.e., utilizing feature prototypes of noise-free samples to correct the labels of noisy samples). Experimental results demonstrate that this strategy can effectively purify the data and alleviate FEB; furthermore, it can improve the performance of various multi-view learning paradigms in label noise scenarios. (The code will be published.)

Applications · Neuroscience, Cognitive Science

Xiubo Liang, Jinxing Han, Yuke Li, Haoqi Zhu, Yu Zhao, Hongzhi Wang

Spiking Neural Networks (SNNs) enable event-driven computation with sparse activations, but building multimodal Transformers on SNNs is hindered by unstable training in deep spiking stacks and a mismatch between dense softmax attention and spike-based communication. We propose SMM Transformer, an SNN-based multimodal Transformer framework that combines (i) a Parallel LIF with Multistage Learnable Parameters (PLMP) neuron and a tailored P-STBP algorithm to stabilize training, (ii) a spike-driven attention approximation (SMSA) with a lightweight self-compensation branch, and (iii) a spiking mixture-of-experts (SMoE) module for modality-aware fusion. Across visual and multimodal benchmarks, SMM Transformer achieves competitive accuracy compared to ANN baselines while reducing the estimated compute energy of the attention module by up to 97\% under a standard MAC/AC cost model.

Deep Learning · Theory

Yoshihiro Maruyama

We develop order-equivariant neural networks (OENN), which generalize standard graph message passing and sheaf neural networks via the face-poset viewpoint. We (i) characterize all linear order-equivariant maps, (ii) build OENN layers, and (iii) prove a universal approximation theorem (UAT) for continuous order-equivariant maps, which is a new result even when restricted to sheaf neural networks (for which no UAT was known before). We illustrate the framework on graph and sheaf models. Our results can also be seen as extending the UAT for graph neural networks to a more general setting that subsumes sheaf neural networks as well.

General Machine Learning · Everything Else

Dang Nguyen, Tu Anh Hoang Nguyen, Thuc Le, Svetha Venkatesh, Trung Le, Sunil Gupta

Anomaly detection (AD) methods often ignore causal dependencies and treat anomalies as outliers, which is brittle when anomalies are primarily mechanism violations rather than extreme values. We propose CausalAno, a causal-aware detector that trains a causal GAN on normal data and leverages its discriminator to learn mechanism-consistent representations. We score test samples by fitting a Gaussian model in this feature space and computing the Mahalanobis distance, measuring deviation from the normal causal manifold. We demonstrate the effectiveness of CausalAno with extensive experiments on 28 tabular datasets (18 continuous-only and 10 mixed-type), comparing against 16 SOTA baselines. Our results show consistent improvements across both mixed-type and numerical-only settings. Our ablation studies further confirm that the gains come from the causal factorization in the causal GAN rather than a generic GAN backbone. Our CausalAno offers a practical and effective solution for real-world applications where anomalies often arise from dependency-breaking behaviors.

Theory · Learning Theory

Xiangchao Li, Xiao Han, Qing Yang, Xin Tong

This paper presents a theoretical investigation into the generalization capabilities of cross-domain knowledge distillation. Utilizing a high-dimensional asymptotic analysis of a linear teacher–student model, we characterize the excess risk while accounting for both model and covariate shifts. Our results provide a formal guarantee for the efficacy of distillation: even when the source and target domains differ substantially, there still may exist a regime where the student model achieves superior generalization ability over the student-only baseline. Moreover, we identify a \textit{crossed double descent} phenomenon: the excess risk can vary non-monotonically with the teacher’s and student’s dimension-to-sample-size ratios. These results provide rigorous insight into when and why distillation helps across domains.

Probabilistic Methods · Everything Else

Matteo Gätzner, Johannes Kirschner

We present a principled framework for uncertainty quantification in computed tomography (CT) reconstruction. Based on the sequential likelihood mixing framework (Kirschner et al., 2025), we establish the first confidence regions with theoretical coverage guarantees for deep learning-based CT reconstructions. In particular, we consider a realistic forward model following the Beer-Lambert law, i.e., a log-linear forward model with Poisson noise, closely reflecting clinical and scientific imaging conditions. The framework is general and applies to both classical algorithms and deep learning reconstruction methods, including U-Nets, U-Net ensembles, and generative Diffusion models. Empirically, we demonstrate that deep reconstruction methods yield substantially tighter confidence regions than classical reconstructions, without sacrificing theoretical coverage guarantees. Our approach allows the detection of hallucinations in reconstructed images and provides interpretable visualizations of confidence regions. This establishes deep models not only as powerful estimators, but also as reliable tools for uncertainty-aware medical imaging.

Deep Learning · Large Language Models

Ruihan Yang, Fanghua Ye, Xiang Wei, Ruoqing Zhao, Kang Luo, Xinbo Xu, Bo Zhao, Ruotian Ma, Shanyi Wang, Zhaopeng Tu 等

Large language models (LLMs) are increasingly deployed as autonomous agents for multi-turn decision-making tasks. However, current agents typically rely on fixed cognitive patterns: non-thinking models generate immediate responses, while thinking models engage in deep reasoning uniformly. This rigidity is inefficient for long-horizon tasks, where cognitive demands vary significantly from step to step, with some requiring strategic planning and others only routine execution. In this paper, we introduce CogRouter, a framework that trains agents to dynamically adapt cognitive depth at each step. Grounded in ACT-R theory, we design four hierarchical cognitive levels ranging from instinctive responses to strategic planning. Our two-stage training approach includes Cognition-aware Supervised Fine-tuning (CogSFT) to instill stable level-specific patterns, and Cognition-aware Policy Optimization (CoPO) for step-level credit assignment via confidence-aware advantage reweighting. The key insight is that appropriate cognitive depth should maximize the confidence of the resulting action. Experiments on ALFWorld and ScienceWorld demonstrate that CogRouter achieves state-of-the-art performance with superior efficiency.

General Machine Learning · Transfer, Multitask and Meta-learning

Yuta Kobayashi, Zilin Jing, Jiayu Yao, Hongseok Namkoong, Shalmali Joshi

Active feature acquisition (AFA) is a sequential decision-making problem where the goal is to improve model performance for test instances by adaptively selecting which features to acquire. In practice, AFA methods often learn from retrospective data with systematic missingness in the features and limited task-specific labels. To address this limitation, we introduce Learning-to-Measure (L2M), which consists of i) reliable uncertainty quantification over unseen tasks, and ii) an uncertainty-guided feature acquisition agent that maximizes conditional mutual information. We demonstrate an autoregressive pre-training approach that underpins reliable uncertainty quantification and acquisition for tasks with arbitrary missingness. L2M operates directly on datasets with retrospective missingness and performs the task in-context, eliminating per-task retraining. Across synthetic and real-world tabular benchmarks, L2M matches or surpasses task-specific baselines, particularly under scarce labels and high missingness.

Deep Learning · Graph Neural Networks

Xuanting Xie, Zhaochen Guo, Bingheng Li, Xingtong Yu, Zhifei Liao, zhao kang, Yuan Fang

Chain-of-Thought (CoT) prompting has shown promise in enhancing the reasoning capabilities of large language models (LLMs) on text-attributed graphs (TAGs). This work reframes CoT-based graph learning through the principle of clustering as reasoning, offering a $k$-means interpretation of how iterative reasoning operates over graph-structured data. We observe that existing graph CoT methods rely on disjoint architectures and fixed graph representations, limiting step-by-step semantic-topological interaction and interpretability. To overcome this limitation, we propose a unified framework named KCoT that integrates CoT reasoning with graph representation learning. Our key theoretical result reveals a formal mathematical correspondence between a Transformer block and the $k$-means algorithm, allowing reasoning to be interpreted as iterative assignment and update steps. Based on this insight, we introduce a Semantic Discriminating Prompt that explicitly formulates these steps as structured CoT reasoning, together with a structure-grounded alignment strategy to fuse topological priors with evolving thought-conditioned representations. Experiments on standard benchmarks demonstrate consistent improvements over state-of-the-art methods, validating clustering as a principled mechanism for CoT-based graph learning.

General Machine Learning · Supervised Learning

Wei Liu, Yufei Chen, Jie Shi, Xiaodong Yue

Evidential Deep Learning (EDL) enables trustworthy multi-view classification, yet suffers from a critical vulnerability: the Scale Mismatch Problem. We theoretically demonstrate that existing evidential fusion rules erroneously equate logit magnitude with semantic confidence, rendering them susceptible to semantic hijacking by inflated but uninformative views. To resolve this, we propose Scale-Invariant Evidential Fusion (SAEF), a framework utilizing instance-wise standardization to strictly decouple confidence from scale. Instead of relying on magnitude dominance, SAEF aggregates views based on statistical consensus. Theoretically, SAEF guarantees invariance to global scaling and robustness to asymmetric dominance. Experiments on four diverse datasets confirm that SAEF outperforms state-of-the-art baselines in accuracy and robustness to semantic conflicts and noise, ensuring stability against severe scale perturbations.

Deep Learning · Large Language Models

Shuo Yang, Jinda Lu, Chiyu Ma, Kexin Huang, Haoming Meng, Qihui Zhang, Yuyang Liu, Bolin Ding, Guoyin Wang, Li Yuan 等

Reinforcement Learning with Verifiable Rewards (RLVR) has emerged as a central paradigm for scaling LLM reasoning, yet its optimization often suffers from training instability and suboptimal convergence. Through a systematic dissection of the GRPO-based objective, we reveal that the rigid clipping decision inherent to the hard-clipping mechanism is the primary bottleneck. Specifically, we find that many high-value signals lie in the **near-boundary** region just beyond the clipping threshold, and are thus discarded. Motivated by this diagnosis, we propose **Near-boundary Stochastic Rescue (NSR)**, a minimal, plug-and-play modification that stochastically retains these slightly out-of-bound tokens to recover lost signals. While NSR, via stochastic sampling, can be interpreted as inducing an implicit gradient decay in expectation, our ablations reveal that its stochastic, boundary-local rescue mechanism is consistently more effective than deterministic gradient decay. Validated by extensive experiments across model sizes from 7B to 30B and both dense and MoE architectures, as a plug-and-play solution, NSR substantially improves training stability and delivers consistent gains over strong baselines such as DAPO and GSPO.

Deep Learning · Large Language Models

Yifan Yu, Moyan Li, Shaoyuan Xu, Jinmiao Fu, Xinhai Hou, Fan Lai, Bryan Wang

Multi-agent systems (MAS) are increasingly capable of tackling complex real-world tasks, yet their reliance on inter-agent coordination, tool use, and long-horizon reasoning makes error recognition particularly challenging. Minor errors can propagate across agents, escalating into task failures while producing long, intertwined execution trajectories that impose significant costs for both human developers and automated systems to debug and analyze. Our key insight is that, despite surface differences in failure trajectories (e.g., logs), MAS errors often recur with similar structural patterns. This paper presents CORRECT, the first lightweight, training-free framework that leverages an online cache of distilled error schemata to recognize and transfer knowledge of failure structures across new requests. This cache-based reuse allows LLMs to perform targeted error localization at inference time, avoiding the need for expensive retraining while adapting to dynamic MAS deployments in subseconds. To support rigorous study in this domain, we also introduce CORRECT-Error, a large-scale dataset of over 2,000 annotated trajectories collected through a novel error-injection pipeline guided by real-world distributions, and further validated through human evaluation to ensure alignment with natural failure patterns. Experiments across seven diverse MAS applications show that CORRECT improves step-level error localization up to 19.8% over existing advances while at near-zero overhead, substantially narrowing the gap between automated and human-level error recognition.