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General Machine Learning · Everything Else

Yaxin Hou, Bo Han, Yuheng Jia, Hui LIU, Junhui Hou

Current long-tailed semi-supervised learning methods assume that labeled data exhibit a long-tailed distribution, and unlabeled data adhere to a typical predefined distribution (i.e., long-tailed, uniform, or inverse long-tailed). However, the distribution of the unlabeled data is generally unknown and may follow an arbitrary distribution. To tackle this challenge, we propose a Controllable Pseudo-label Generation (CPG) framework, expanding the labeled dataset with the progressively identified reliable pseudo-labels from the unlabeled dataset and training the model on the updated labeled dataset with a known distribution, making it unaffected by the unlabeled data distribution. Specifically, CPG operates through a controllable self-reinforcing optimization cycle: (i) at each training step, our dynamic controllable filtering mechanism selectively incorporates reliable pseudo-labels from the unlabeled dataset into the labeled dataset, ensuring that the updated labeled dataset follows a known distribution; (ii) we then construct a Bayes-optimal classifier using logit adjustment based on the updated labeled data distribution; (iii) this improved classifier subsequently helps identify more reliable pseudo-labels in the next training step. We further theoretically prove that this optimization cycle can significantly reduce the generalization error under some conditions. Additionally, we propose a class-aware adaptive augmentation module to further improve the representation of minority classes, and an auxiliary branch to maximize data utilization by leveraging all labeled and unlabeled samples. Comprehensive evaluations on various commonly used benchmark datasets show that CPG achieves consistent improvements, surpassing state-of-the-art methods by up to **15.97\%** in accuracy. The code is available at https://github.com/yaxinhou/CPG.

Applications · Neuroscience, Cognitive Science

Nicholas Tacca, Bryan Schlink, Jackson Levine, Mary K. Heimann, Collin Dunlap, Sam Colachis, Philip Putnam, Matthew Zeglen, Daniel Brobston, Austin Bollinger 等

Extracting neural signals at the single motor neuron level provides an optimal control signal for neuroprosthetic applications. However, current algorithms to decompose motor units from high-density electromyography (HD-EMG) are time-consuming and inconsistent, limiting their application to controlled scenarios in a research setting. We introduce MUelim, an algorithm for efficient motor unit decomposition that uses approximate joint diagonalization with a subtractive approach to rapidly identify and refine candidate sources. The algorithm incorporates an extend-lag procedure to augment data for enhanced source separability prior to diagonalization. By systematically iterating and eliminating redundant or noisy sources, MUelim achieves high decomposition accuracy while significantly reducing computational complexity, making it well-suited for real-time applications. We validate MUelim by demonstrating its ability to extract motor units in both simulated and physiological HD-EMG grid data. Across six healthy participants performing ramp and maximum voluntary contraction paradigms, MUelim achieves up to a 36$\times$ speed increase compared to existing state-of-the-art methods while decomposing a similar number of high signal-to-noise sources. Furthermore, we showcase a real-world application of MUelim in a clinical setting in which an individual with spinal cord injury controlled an EMG-driven neuroprosthetic to perform functional tasks. We demonstrate the ability to decode motor intent in real-time using a spiking neural network trained on the decomposed motor unit spike trains to trigger functional electrical stimulation patterns that evoke hand movements during task practice therapy. We show that motor unit-based decoding enables nuanced motor control, highlighting the potential of MUelim to advance assistive neurotechnology and rehabilitation through precise, intention-driven neuroprosthetic systems.

Reinforcement Learning · Everything Else

Rajesh Mangannavar, Stefan Lee, Alan Fern, Prasad Tadepalli

We propose a novel approach to learn relational policies for classical planning based on learning to rank actions. We introduce a new graph representation that explicitly captures action information and propose a Graph Neural Network (GNN) architecture augmented with Gated Recurrent Units (GRUs) to learn action rankings. Unlike value-function based approaches that must learn a globally consistent function, our action ranking method only needs to learn locally consistent ranking. Our model is trained on data generated from small problem instances that are easily solved by planners and is applied to significantly larger instances where planning is computationally prohibitive. Experimental results across standard planning benchmarks demonstrate that our action-ranking approach not only achieves better generalization to larger problems than those used in training but also outperforms multiple baselines (value function and action ranking) methods in terms of success rate and plan quality.

General Machine Learning · Representation Learning

Sean Lamont, Christian Walder, Amir Dezfouli, Paul Montague, Michael Norrish

A key challenge in automated formal reasoning is the intractable search space, which grows exponentially with the depth of the proof. This branching is caused by the large number of candidate proof tactics which can be applied to a given goal. Nonetheless, many of these tactics are semantically similar or lead to an execution error, wasting valuable resources in both cases. We address the problem of effectively pruning this search, using only synthetic data generated from previous proof attempts. We first demonstrate that it is possible to generate semantically aware tactic representations which capture the effect on the proving environment, likelihood of success, and execution time. We then propose a novel filtering mechanism which leverages these representations to select semantically diverse and high quality tactics, using Determinantal Point Processes. Our approach, 3D-Prover, is designed to be general, and to augment any underlying tactic generator. We demonstrate the effectiveness of 3D-Prover on the miniF2F and LeanDojo benchmarks by augmenting popular open source proving LLMs. We show that our approach leads to an increase in the overall proof rate, as well as a significant improvement in the tactic success rate, execution time and diversity. We make our code available at https://github.com/sean-lamont/3D-Prover.

Data-centric AI · Data-centric AI methods and tools

Haoyu Zhang, WentaoZhang, Hao Miao, Xinke Jiang, Yuchen Fang, Yifan Zhang

Spatio-Temporal Graph Neural Networks (STGNNs) have emerged as a powerful tool for modeling dynamic graph-structured data across diverse domains. However, they often fail to generalize in Spatio-Temporal Out-of-Distribution (STOOD) scenarios, where both temporal dynamics and spatial structures evolve beyond the training distribution. To address this problem, we propose an innovative Spatio-Temporal Retrieval-Augmented Pattern Learning framework, STRAP, which enhances model generalization by integrating retrieval-augmented learning into the STGNN continue learning pipeline. The core of STRAP is a compact and expressive pattern library that stores representative spatio-temporal patterns enriched with historical, structural, and semantic information, which is obtained and optimized during the training phase. During inference, STRAP retrieves relevant patterns from this library based on similarity to the current input and injects them into the model via a plug-and-play prompting mechanism. This not only strengthens spatio-temporal representations but also mitigates catastrophic forgetting. Moreover, STRAP introduces a knowledge-balancing objective to harmonize new information with retrieved knowledge. Extensive experiments across multiple real-world streaming graph datasets show that STRAP consistently outperforms state-of-the-art STGNN baselines on STOOD tasks, demonstrating its robustness, adaptability, and strong generalization capability without task-specific fine-tuning.

Applications · Neuroscience, Cognitive Science

Antoine Collas, Ce Ju, Nicolas Salvy, Bertrand Thirion

Generating realistic brain connectivity matrices is key to analyzing population heterogeneity in brain organization, understanding disease, and augmenting data in challenging classification problems. Functional connectivity matrices lie in constrained spaces—such as the set of symmetric positive definite or correlation matrices—that can be modeled as Riemannian manifolds. However, using Riemannian tools typically requires redefining core operations (geodesics, norms, integration), making generative modeling computationally inefficient. In this work, we propose DiffeoCFM, an approach that enables conditional flow matching (CFM) on matrix manifolds by exploiting pullback metrics induced by global diffeomorphisms on Euclidean spaces. We show that Riemannian CFM with such metrics is equivalent to applying standard CFM after data transformation. This equivalence allows efficient vector field learning, and fast sampling with standard ODE solvers. We instantiate DiffeoCFM with two different settings: the matrix logarithm for covariance matrices and the normalized Cholesky decomposition for correlation matrices. We evaluate DiffeoCFM on three large-scale fMRI datasets with more than $4600$ scans from $2800$ subjects (ADNI, ABIDE, OASIS‑3) and two EEG motor imagery datasets with over $30000$ trials from $26$ subjects (BNCI2014‑002 and BNCI2015‑001). It enables fast training and achieves state-of-the-art performance, all while preserving manifold constraints. Code: https://github.com/antoinecollas/DiffeoCFM

Computer Vision · Vision Models & Multimodal

Yongdong Luo, Xiawu Zheng, Guilin Li, Shukang Yin, Haojia Lin, Chaoyou Fu, Jinfa Huang, Jiayi Ji, Fei Chao, Jiebo Luo 等

Existing large video-language models (LVLMs) struggle to comprehend long videos correctly due to limited context. To address this problem, fine-tuning long-context LVLMs and employing GPT-based agents have emerged as promising solutions. However, fine-tuning LVLMs would require extensive high-quality data and substantial GPU resources, while GPT-based agents would rely on proprietary models (e.g., GPT-4o). In this paper, we propose Video Retrieval-Augmented Generation (Video-RAG), a training-free and cost-effective pipeline that employs visually-aligned auxiliary texts to help facilitate cross-modality alignment while providing additional information beyond the visual content. Specifically, we leverage open-source external tools to extract visually-aligned information from pure video data (e.g., audio, optical character, and object detection), and incorporate the extracted information into an existing LVLM as auxiliary texts, alongside video frames and queries, in a plug-and-play manner. Our Video-RAG offers several key advantages: (i) lightweight with low computing overhead due to single-turn retrieval; (ii) easy implementation and compatibility with any LVLM; and (iii) significant, consistent performance gains across long video understanding benchmarks, including Video-MME, MLVU, and LongVideoBench. Notably, our model demonstrates superior performance over proprietary models like Gemini-1.5-Pro and GPT-4o when utilized with a 72B model.

Applications · Robotics

Kefei Zhu, Fengshuo Bai, YuanHao Xiang, Yishuai Cai, Xinglin Chen, Ruochong Li, Xingtao Wang, Hao Dong, Yaodong Yang, Xiaopeng Fan 等

Dexterous manipulation is critical for advancing robot capabilities in real-world applications, yet diverse and high-quality datasets remain scarce. Existing data collection methods either rely on human teleoperation or require significant human engineering, or generate data with limited diversity, which restricts their scalability and generalization. In this paper, we introduce DexFlyWheel, a scalable data generation framework that employs a self-improving cycle to continuously enrich data diversity. Starting from efficient seed demonstrations warmup, DexFlyWheel expands the dataset through iterative cycles. Each cycle follows a closed-loop pipeline that integrates Imitation Learning (IL), residual Reinforcement Learning (RL), rollout trajectory collection, and data augmentation. Specifically, IL extracts human-like behaviors from demonstrations, and residual RL enhances policy generalization. The learned policy is then used to generate trajectories in simulation, which are further augmented across diverse environments and spatial configurations before being fed back into the next cycle. Over successive iterations, a self-improving data flywheel effect emerges, producing datasets that cover diverse scenarios and thereby scaling policy performance. Experimental results demonstrate that DexFlyWheel generates over 2,000 diverse demonstrations across four challenging tasks. Policies trained on our dataset achieve an average success rate of 81.9\% on the challenge test sets and successfully transfer to the real world through digital twin, achieving a 78.3\% success rate on dual-arm lift tasks.

Applications · Genetics, Cell Biology, etc

Jianle Sun, Chaoqi Liang, Ran Wei, Peng Zheng, LEI BAI, Wanli Ouyang, Hongliang Yan, Peng Ye

Advances in single-cell sequencing have enabled high-resolution profiling of diverse molecular modalities, while integrating unpaired multi-omics single-cell data remains challenging. Existing approaches either rely on pair information or prior correspondences, or require computing a global pairwise coupling matrix, limiting their scalability and flexibility. In this paper, we introduce a scalable and flexible generative framework called single-cell Multi-omics Regularized Disentangled Representations (scMRDR) for unpaired multi-omics integration. Specifically, we disentangle each cell’s latent representations into modality-shared and modality-specific components using a well-designed $\beta$-VAE architecture, which are augmented with isometric regularization to preserve intra-omics biological heterogeneity, adversarial objective to encourage cross-modal alignment, and masked reconstruction loss strategy to address the issue of missing features across modalities. Our method achieves excellent performance on benchmark datasets in terms of batch correction, modality alignment, and biological signal preservation. Crucially, it scales effectively to large-level datasets and supports integration of more than two omics, offering a powerful and flexible solution for large-scale multi-omics data integration and downstream biological discovery.

Haowei Zhu, Tianxiang Pan, Rui Qin, Jun-Hai Yong, Bin Wang

The scale and quality of datasets are crucial for training robust perception models. However, obtaining large-scale annotated data is both costly and time-consuming. Generative models have emerged as a powerful tool for data augmentation by synthesizing samples that adhere to desired distributions. However, current generative approaches often rely on complex post-processing or extensive fine-tuning on massive datasets to achieve satisfactory results, and they remain prone to content–position mismatches and semantic leakage. To overcome these limitations, we introduce ReCon, a novel augmentation framework that enhances the capacity of structure-controllable generative models for object detection. ReCon integrates region-guided rectification into the diffusion sampling process, using feedback from a pre-trained perception model to rectify misgenerated regions within diffusion sampling process. We further propose region-aligned cross-attention to enforce spatial–semantic alignment between image regions and their textual cues, thereby improving both semantic consistency and overall image fidelity. Extensive experiments demonstrate that ReCon substantially improve the quality and trainability of generated data, achieving consistent performance gains across various datasets, backbone architectures, and data scales.

Data-centric AI · Everything Else

Xiaoyang Liu, Kangjie Bao, Jiashuo Zhang, Yunqi Liu, Yu Chen, Yuntian Liu, Yang Jiao, Tao Luo

Autoformalization, the automatic translation of mathematical content from natural language into machine-verifiable formal languages, has seen significant progress driven by advances in large language models (LLMs). Nonetheless, a primary barrier to further improvements is the limited availability of parallel corpora that map informal mathematical text to its formal counterpart. To address this limitation, we propose ATLAS (Autoformalizing Theorems through Lifting, Augmentation, and Synthesis of Data), a novel data generation framework designed to produce large-scale, high-quality parallel corpora of theorem statements. Distinct from prior approaches, ATLAS begins with a concept repository, accelerates the improvement of the student model through expert iteration combined with knowledge distillation, and introduces two novel augmentation strategies that exploit the structural characteristics of formal languages. Running the proposed ATLAS framework for 10 iterations, we construct an undergraduate-level dataset of 117k theorem statements and develop the ATLAS Translator by fine-tuning Llama3.1-8B-Instruct with LoRA. This model establishes a new state of the art, demonstrating statistically significant improvements over both the Herald Translator and the Kimina-Autoformalizer across all benchmarks (p<0.05, two-sided t-test). Furthermore, we demonstrate that the full-parameter fine-tuning of a stronger base model on the ATLAS dataset leads to superior performance. The datasets, model, and code are available at https://github.com/XiaoyangLiu-sjtu/ATLAS.

Applications · Neuroscience, Cognitive Science

Lucas Piper, Arlindo L Oliveira, Tiago Marques

Convolutional neural networks (CNNs) trained on object recognition achieve high task performance but continue to exhibit vulnerability under a range of visual perturbations and out-of-domain images, when compared with biological vision. Prior work has demonstrated that coupling a standard CNN with a front-end (VOneBlock) that mimics the primate primary visual cortex (V1) can improve overall model robustness. Expanding on this, we introduce Early Vision Networks (EVNets), a new class of hybrid CNNs that combine the VOneBlock with a novel SubcorticalBlock, whose architecture draws from computational models in neuroscience and is parameterized to maximize alignment with subcortical responses reported across multiple experimental studies. Without being optimized to do so, the assembly of the SubcorticalBlock with the VOneBlock improved V1 alignment across most standard V1 benchmarks, and better modeled extra-classical receptive field phenomena. In addition, EVNets exhibit stronger emergent shape bias and outperform the base CNN architecture by 9.3\% on an aggregate benchmark of robustness evaluations, including adversarial perturbations, common corruptions, and domain shifts. Finally, we show that EVNets can be further improved when paired with a state-of-the-art data augmentation technique, surpassing the performance of the isolated data augmentation approach by 6.2\% on our robustness benchmark. This result reveals complementary benefits between changes in architecture to better mimic biology and training-based machine learning approaches.

Deep Learning · Generative Models and Autoencoders

Vinh Tong, Trung-Dung Hoang, Anji Liu, Guy Van den Broeck, Mathias Niepert

In domains such as molecular and protein generation, physical systems exhibit inherent symmetries that are critical to model. Two main strategies have emerged for learning invariant distributions: designing equivariant network architectures and using data augmentation to approximate equivariance. While equivariant architectures preserve symmetry by design, they often involve greater complexity and pose optimization challenges. Data augmentation, on the other hand, offers flexibility but may fall short in fully capturing symmetries. Our framework enhances both approaches by reducing training variance and providing a provably lower-variance gradient estimator. We achieve this by interpreting data augmentation as a Monte Carlo estimator of the training gradient and applying Rao–Blackwellization. This leads to more stable optimization, faster convergence, and reduced variance, all while requiring only a single forward and backward pass per sample. We also present a practical implementation of this estimator—incorporating the loss and sampling procedure—through a method we call Orbit Diffusion. Theoretically, we guarantee that our loss admits equivariant minimizers. Empirically, Orbit Diffusion achieves state-of-the-art results on GEOM-QM9 for molecular conformation generation, improves crystal structure prediction, and advances text-guided crystal generation on the Perov-5 and MP-20 benchmarks. Additionally, it enhances protein designability in protein structure generation. Code is available at https://github.com/vinhsuhi/Orbit-Diffusion.git.

Data-centric AI · Data augmentation

Wanru Zhao, Lucas Page-Caccia, Zhengyan Shi, Minseon Kim, Weijia Xu, Alessandro Sordoni

Curriculum learning is a class of training strategies that organizes the data being exposed to a model by difficulty, gradually from simpler to more complex examples. This research explores a reverse curriculum generation approach that recursively decomposes complex datasets into simpler, more learnable components. We propose a teacher-student framework where the teacher is equipped with the ability to reason step-by-step, which is used to recursively generate easier versions of examples, enabling the student model to progressively master difficult tasks. We propose a novel scoring system to measure data difficulty based on its structural complexity and conceptual depth, allowing curriculum construction over decomposed data. Experiments on math datasets (MATH and AIME) and code generation datasets demonstrate that models trained with curricula generated by our approach exhibit superior performance compared to standard training on original datasets.

Applications · Robotics

Yuxin Liu, Zhenghao (Mark) Peng, Xuanhao Cui, Bolei Zhou

Scenario-based testing is essential for validating the performance of autonomous driving (AD) systems. However, such testing is limited by the scarcity of long-tailed, safety-critical scenarios in existing datasets collected in the real world. To tackle the data issue, we propose the Adv-BMT framework, which augments real-world scenarios with diverse and realistic adversarial interactions. The core component of Adv-BMT is a bidirectional motion transformer (BMT) model to perform inverse traffic motion predictions, which takes the last frame of the scenario as input and reconstruct the traffic in the inverse of chronological order, till the initial time step. The Adv-BMT framework is a two-stage pipeline: it first conducts adversarial initializations and then inverse motion predictions. Different from previous work, we do not need any collision data for pretraining and are still able to generate realistic and diverse collision interactions. Our experimental results validate the quality of generated collision scenarios by Adv-BMT: training in our augmented dataset would reduce episode collision rates by 20\% compared to previous work. The code will be made available.

Data-centric AI · Data augmentation

Jaehun Jung, Seungju Han, Ximing Lu, Skyler Hallinan, David Acuna, Shrimai Prabhumoye, Mostofa Patwary, Mohammad Shoeybi, Bryan Catanzaro, Yejin Choi

Data diversity is crucial for training a strong language model. Yet metrics of diversity often diverge from this goal, measuring variations in heuristic features—like n-grams or embeddings—that are detached from how the model actually performs on a target task. This motivates us to ask: *Can we redefine data diversity—beyond measuring variations in heuristic features—in a way that better predicts model generalization?* Through large-scale empirical analyses spanning over 300 training runs, carefully controlled for data scale and quality, we show that data diversity can be a strong predictor of generalization in LLM reasoning—as measured by average model performance on unseen out-of-distribution benchmarks. We introduce **G-Vendi**, a metric that quantifies diversity via the entropy of model-induced loss gradients. G-Vendi scales to million-sample datasets and yet consistently outperforms heuristic alternatives, achieving strong correlation ($\text{Spearman's } \rho \approx 0.9$) with out-of-distribution (OOD) performance across both natural language inference (NLI) and math reasoning tasks. Building on this insight, we present **Prismatic Synthesis**, a framework for generating diverse synthetic data by targeting underrepresented regions in gradient space. Experimental results show that Prismatic Synthesis consistently improves model performance as we scale synthetic data—not just on in-distribution test but across unseen, out-of-distribution benchmarks—significantly outperforming state-of-the-art models in both domains. For example, PrismMath-7B, our model distilled from a 32B LLM without human verification, outperforms R1-Distill-Qwen-7B—trained on proprietary data generated by 671B R1—on 6 out of 7 challenging math benchmarks.

Computer Vision · Vision Models & Multimodal

Haidong Xu, Guangwei Xu, Zhedong Zheng, Xiatian Zhu, Wei Ji, Xiangtai Li, Ruijie Guo, Meishan Zhang, Min Zhang, Hao Fei

This paper introduces **VimoRAG**, a novel video-based retrieval-augmented motion generation framework for motion large language models (LLMs). As motion LLMs face severe out-of-domain/out-of-vocabulary issues due to limited annotated data, **VimoRAG** leverages large-scale in-the-wild video databases to enhance 3D motion generation by retrieving relevant 2D human motion signals. While video-based motion RAG is nontrivial, we address two key bottlenecks: (1) developing an effective motion-centered video retrieval model that distinguishes human poses and actions, and (2) mitigating the issue of error propagation caused by suboptimal retrieval results. We design the Gemini Motion Video Retriever mechanism and the Motion-centric Dual-alignment DPO Trainer, enabling effective retrieval and generation processes. Experimental results show that **VimoRAG** significantly boosts the performance of motion LLMs constrained to text-only input.

Social Aspects · Trustworthy Machine Learning

Longwei Wang, Ifrat Ikhtear Uddin, Prof. KC Santosh (PhD), Chaowei Zhang, Xiao Qin, Yang Zhou

Adversarial examples reveal critical vulnerabilities in deep neural networks by exploiting their sensitivity to imperceptible input perturbations. While adversarial training remains the predominant defense strategy, it often incurs significant computational cost and may compromise clean-data accuracy. In this work, we investigate an architectural approach to adversarial robustness by embedding group-equivariant convolutions—specifically, rotation- and scale-equivariant layers—into standard convolutional neural networks (CNNs). These layers encode symmetry priors that align model behavior with structured transformations in the input space, promoting smoother decision boundaries and greater resilience to adversarial attacks. We propose and evaluate two symmetry-aware architectures: a parallel design that processes standard and equivariant features independently before fusion, and a cascaded design that applies equivariant operations sequentially. Theoretically, we demonstrate that such models reduce hypothesis space complexity, regularize gradients, and yield tighter certified robustness bounds under the CLEVER (Cross Lipschitz Extreme Value for nEtwork Robustness) framework. Empirically, our models consistently improve adversarial robustness and generalization across CIFAR-10, CIFAR-100, and CIFAR-10C under both FGSM and PGD attacks, without requiring adversarial training. These findings underscore the potential of symmetry-enforcing architectures as efficient and principled alternatives to data augmentation-based defenses.

Deep Learning · Graph Neural Networks

Niklas Freymuth, Tobias Würth, Nicolas Schreiber, Balázs Gyenes, Andreas Boltres, Johannes Mitsch, Aleksandar Taranovic, Tai Hoang, Philipp Dahlinger, Philipp Becker 等

The cost and accuracy of simulating complex physical systems using the Finite Element Method (FEM) scales with the resolution of the underlying mesh. Adaptive meshes improve computational efficiency by refining resolution in critical regions, but typically require task-specific heuristics or cumbersome manual design by a human expert. We propose Adaptive Meshing By Expert Reconstruction (AMBER), a supervised learning approach to mesh adaptation. Starting from a coarse mesh, AMBER iteratively predicts the sizing field, i.e., a function mapping from the geometry to the local element size of the target mesh, and uses this prediction to produce a new intermediate mesh using an out-of-the-box mesh generator. This process is enabled through a hierarchical graph neural network, and relies on data augmentation by automatically projecting expert labels onto AMBER-generated data during training. We evaluate AMBER on 2D and 3D datasets, including classical physics problems, mechanical components, and real-world industrial designs with human expert meshes. AMBER generalizes to unseen geometries and consistently outperforms multiple recent baselines, including ones using Graph and Convolutional Neural Networks, and Reinforcement Learning-based approaches.

Computer Vision · 3D Rendering & Reconstruction

Sayan Deb Sarkar, Sinisa Stekovic, Vincent Lepetit, Iro Armeni

Transferring appearance to 3D assets using different representations of the appearance object - such as images or text - has garnered interest due to its wide range of applications in industries like gaming, augmented reality, and digital content creation. However, state-of-the-art methods still fail when the geometry between the input and appearance objects is significantly different. A straightforward approach is to directly apply a 3D generative model, but we show that this ultimately fails to produce appealing results. Instead, we propose a principled approach inspired by universal guidance. Given a pretrained rectified flow model conditioned on image or text, our training-free method interacts with the sampling process by periodically adding guidance. This guidance can be modeled as a differentiable loss function, and we experiment with two different types of guidance including part-aware losses for appearance and self-similarity. Our experiments show that our approach successfully transfers texture and geometric details to the input 3D asset, outperforming baselines both qualitatively and quantitatively. We also show that traditional metrics are not suitable for evaluating the task due to their inability of focusing on local details and comparing dissimilar inputs, in absence of ground truth data. We thus evaluate appearance transfer quality with a GPT-based system objectively ranking outputs, ensuring robust and human-like assessment, as further confirmed by our user study. Beyond showcased scenarios, our method is general and could be extended to different types of diffusion models and guidance functions. Project Page: *[https://sayands.github.io/guideflow3d](https://sayands.github.io/guideflow3d)*