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Miscellaneous Aspects of Machine Learning/Causality

Adrián Javaloy, Pablo Sanchez-Martin, Isabel Valera

In this work, we deepen on the use of normalizing flows for causal reasoning. Specifically, we first leverage recent results on non-linear ICA to show that causal models are identifiable from observational data given a causal ordering, and thus can be recovered using autoregressive normalizing flows (NFs). Second, we analyze different design and learning choices for *causal normalizing flows* to capture the underlying causal data-generating process. Third, we describe how to implement the *do-operator* in causal NFs, and thus, how to answer interventional and counterfactual questions. Finally, in our experiments, we validate our design and training choices through a comprehensive ablation study; compare causal NFs to other approaches for approximating causal models; and empirically demonstrate that causal NFs can be used to address real-world problems—where the presence of mixed discrete-continuous data and partial knowledge on the causal graph is the norm. The code for this work can be found at https://github.com/psanch21/causal-flows.

Miscellaneous Aspects of Machine Learning/Causality

Moritz Willig, Matej Zečević, Devendra Dhami, Kristian Kersting

Structural causal models (SCMs) are a powerful tool for understanding the complex causal relationships that underlie many real-world systems. As these systems grow in size, the number of variables and complexity of interactions between them does, too. Thus, becoming convoluted and difficult to analyze. This is particularly true in the context of machine learning and artificial intelligence, where an ever increasing amount of data demands for new methods to simplify and compress large scale SCM. While methods for marginalizing and abstracting SCM already exist today, they may destroy the causality of the marginalized model. To alleviate this, we introduce the concept of consolidating causal mechanisms to transform large-scale SCM while preserving consistent interventional behaviour. We show consolidation is a powerful method for simplifying SCM, discuss reduction of computational complexity and give a perspective on generalizing abilities of consolidated SCM.

Miscellaneous Aspects of Machine Learning/Causality

Lingjing Kong, Biwei Huang, Feng Xie, Eric Xing, Yuejie Chi, Kun Zhang

Identifying latent variables and causal structures from observational data is essential to many real-world applications involving biological data, medical data, and unstructured data such as images and languages. However, this task can be highly challenging, especially when observed variables are generated by causally related latent variables and the relationships are nonlinear. In this work, we investigate the identification problem for nonlinear latent hierarchical causal models in which observed variables are generated by a set of causally related latent variables, and some latent variables may not have observed children. We show that the identifiability of causal structures and latent variables (up to invertible transformations) can be achieved under mild assumptions: on causal structures, we allow for multiple paths between any pair of variables in the graph, which relaxes latent tree assumptions in prior work; on structural functions, we permit general nonlinearity and multi-dimensional continuous variables, alleviating existing work's parametric assumptions. Specifically, we first develop an identification criterion in the form of novel identifiability guarantees for an elementary latent variable model. Leveraging this criterion, we show that both causal structures and latent variables of the hierarchical model can be identified asymptotically by explicitly constructing an estimation procedure. To the best of our knowledge, our work is the first to establish identifiability guarantees for both causal structures and latent variables in nonlinear latent hierarchical models.

Miscellaneous Aspects of Machine Learning/Causality

Stratis Tsirtsis, Manuel Rodriguez

Whenever a clinician reflects on the efficacy of a sequence of treatment decisions for a patient, they may try to identify critical time steps where, had they made different decisions, the patient's health would have improved. While recent methods at the intersection of causal inference and reinforcement learning promise to aid human experts, as the clinician above, to *retrospectively* analyze sequential decision making processes, they have focused on environments with finitely many discrete states. However, in many practical applications, the state of the environment is inherently continuous in nature. In this paper, we aim to fill this gap. We start by formally characterizing a sequence of discrete actions and continuous states using finite horizon Markov decision processes and a broad class of bijective structural causal models. Building upon this characterization, we formalize the problem of finding counterfactually optimal action sequences and show that, in general, we cannot expect to solve it in polynomial time. Then, we develop a search method based on the A* algorithm that, under a natural form of Lipschitz continuity of the environment’s dynamics, is guaranteed to return the optimal solution to the problem. Experiments on real clinical data show that our method is very efficient in practice, and it has the potential to offer interesting insights for sequential decision making tasks.

Miscellaneous Aspects of Machine Learning/Causality

Hengrui Cai, Yixin Wang, Michael Jordan, Rui Song

The causal revolution has stimulated interest in understanding complex relationships in various fields. Most of the existing methods aim to discover causal relationships among all variables within a complex large-scale graph. However, in practice, only a small subset of variables in the graph are relevant to the outcomes of interest. Consequently, causal estimation with the full causal graph---particularly given limited data---could lead to numerous *falsely discovered, spurious* variables that exhibit high correlation with, but exert no causal impact on, the target outcome. In this paper, we propose learning a class of *necessary and sufficient causal graphs (NSCG)* that exclusively comprises causally relevant variables for an outcome of interest, which we term *causal features*. The key idea is to employ *probabilities of causation* to systematically evaluate the importance of features in the causal graph, allowing us to identify a subgraph relevant to the outcome of interest. To learn NSCG from data, we develop a *necessary and sufficient causal structural learning (NSCSL)* algorithm, by establishing theoretical properties and relationships between probabilities of causation and natural causal effects of features. Across empirical studies of simulated and real data, we demonstrate that NSCSL outperforms existing algorithms and can reveal crucial yeast genes for target heritable traits of interest.

Miscellaneous Aspects of Machine Learning/Causality

Jann Spiess, guido imbens, Amar Venugopal

Motivated by a recent literature on the double-descent phenomenon in machine learning, we consider highly over-parameterized models in causal inference, including synthetic control with many control units. In such models, there may be so many free parameters that the model fits the training data perfectly. We first investigate high-dimensional linear regression for imputing wage data and estimating average treatment effects, where we find that models with many more covariates than sample size can outperform simple ones. We then document the performance of high-dimensional synthetic control estimators with many control units. We find that adding control units can help improve imputation performance even beyond the point where the pre-treatment fit is perfect. We provide a unified theoretical perspective on the performance of these high-dimensional models. Specifically, we show that more complex models can be interpreted as model-averaging estimators over simpler ones, which we link to an improvement in average performance. This perspective yields concrete insights into the use of synthetic control when control units are many relative to the number of pre-treatment periods.

Miscellaneous Aspects of Machine Learning/Causality

Andrew Lampinen, Stephanie Chan, Ishita Dasgupta, Andrew Nam, Jane Wang

What can be learned about causality and experimentation from passive data? This question is salient given recent successes of passively-trained language models in interactive domains such as tool use. Passive learning is inherently limited. However, we show that purely passive learning can in fact allow an agent to learn generalizable strategies for determining and using causal structures, as long as the agent can intervene at test time. We formally illustrate that learning a strategy of first experimenting, then seeking goals, can allow generalization from passive learning in principle. We then show empirically that agents trained via imitation on expert data can indeed generalize at test time to infer and use causal links which are never present in the training data; these agents can also generalize experimentation strategies to novel variable sets never observed in training.We then show that strategies for causal intervention and exploitation can be generalized from passive data even in a more complex environment with high-dimensional observations, with the support of natural language explanations. Explanations can even allow passive learners to generalize out-of-distribution from perfectly-confounded training data. Finally, we show that language models, trained only on passive next-word prediction, can generalize causal intervention strategies from a few-shot prompt containing explanations and reasoning. These results highlight the surprising power of passive learning of active causal strategies, and have implications for understanding the behaviors and capabilities of language models.

Miscellaneous Aspects of Machine Learning/Causality

Naoki Egami, Musashi Hinck, Brandon Stewart, Hanying Wei

In computational social science (CSS), researchers analyze documents to explain social and political phenomena. In most scenarios, CSS researchers first obtain labels for documents and then explain labels using interpretable regression analyses in the second step. One increasingly common way to annotate documents cheaply at scale is through large language models (LLMs). However, like other scalable ways of producing annotations, such surrogate labels are often imperfect and biased. We present a new algorithm for using imperfect annotation surrogates for downstream statistical analyses while guaranteeing statistical properties—like asymptotic unbiasedness and proper uncertainty quantification—which are fundamental to CSS research. We show that direct use of surrogate labels in downstream statistical analyses leads to substantial bias and invalid confidence intervals, even with high surrogate accuracy of 80-90\%. To address this, we build on debiased machine learning to propose the design-based supervised learning (DSL) estimator. DSL employs a doubly-robust procedure to combine surrogate labels with a smaller number of high-quality, gold-standard labels. Our approach guarantees valid inference for downstream statistical analyses, even when surrogates are arbitrarily biased and without requiring stringent assumptions, by controlling the probability of sampling documents for gold-standard labeling. Both our theoretical analysis and experimental results show that DSL provides valid statistical inference while achieving root mean squared errors comparable to existing alternatives that focus only on prediction without inferential guarantees.

Miscellaneous Aspects of Machine Learning/Causality

Shanyun Gao, Raghavendra Addanki, Tong Yu, Ryan Rossi, Murat Kocaoglu

Discovering causal relations from observational time series without making the stationary assumption is a significant challenge. In practice, this challenge is common in many areas, such as retail sales, transportation systems, and medical science. Here, we consider this problem for a class of non-stationary time series. The structural causal model (SCM) of this type of time series, called the semi-stationary time series, exhibits that a finite number of different causal mechanisms occur sequentially and periodically across time. This model holds considerable practical utility because it can represent periodicity, including common occurrences such as seasonality and diurnal variation. We propose a constraint-based, non-parametric algorithm for discovering causal relations in this setting. The resulting algorithm, PCMCI$_{\Omega}$, can capture the alternating and recurring changes in the causal mechanisms and then identify the underlying causal graph with conditional independence (CI) tests. We show that this algorithm is sound in identifying causal relations on discrete time series. We validate the algorithm with extensive experiments on continuous and discrete simulated data. We also apply our algorithm to a real-world climate dataset.

Miscellaneous Aspects of Machine Learning/Causality

Ahmed Alaa, Zaid Ahmad, Mark van der Laan

We investigate the problem of machine learning-based (ML) predictive inference on individual treatment effects (ITEs). Previous work has focused primarily on developing ML-based “meta-learners” that can provide point estimates of the conditional average treatment effect (CATE)—these are model-agnostic approaches for combining intermediate nuisance estimates to produce estimates of CATE. In this paper, we develop conformal meta-learners, a general framework for issuing predictive intervals for ITEs by applying the standard conformal prediction (CP) procedure on top of CATE meta-learners. We focus on a broad class of meta-learners based on two-stage pseudo-outcome regression and develop a stochastic ordering framework to study their validity. We show that inference with conformal meta-learners is marginally valid if their (pseudo-outcome) conformity scores stochastically dominate “oracle” conformity scores evaluated on the unobserved ITEs. Additionally, we prove that commonly used CATE meta-learners, such as the doubly-robust learner, satisfy a model- and distribution-free stochastic (or convex) dominance condition, making their conformal inferences valid for practically-relevant levels of target coverage. Whereas existing procedures conduct inference on nuisance parameters (i.e., potential outcomes) via weighted CP, conformal meta-learners enable direct inference on the target parameter (ITE). Numerical experiments show that conformal meta-learners provide valid intervals with competitive efficiency while retaining the favorable point estimation properties of CATE meta-learners.

Miscellaneous Aspects of Machine Learning/Causality

Drago Plecko, Elias Bareinboim

One of the fundamental challenges found throughout the data sciences is to explain why things happen in specific ways, or through which mechanisms a certain variable $X$ exerts influences over another variable $Y$. In statistics and machine learning, significant efforts have been put into developing machinery to estimate correlations across variables efficiently. In causal inference, a large body of literature is concerned with the decomposition of causal effects under the rubric of mediation analysis. However, many variations are spurious in nature, including different phenomena throughout the applied sciences. Despite the statistical power to estimate correlations and the identification power to decompose causal effects, there is still little understanding of the properties of spurious associations and how they can be decomposed in terms of the underlying causal mechanisms. In this manuscript, we develop formal tools for decomposing spurious variations in both Markovian and Semi-Markovian models. We prove the first results that allow a non-parametric decomposition of spurious effects and provide sufficient conditions for the identification of such decompositions. The described approach has several applications, ranging from explainable and fair AI to questions in epidemiology and medicine, and we empirically demonstrate its use.

Miscellaneous Aspects of Machine Learning/Causality

Yashas Annadani, Nick Pawlowski, Joel Jennings, Stefan Bauer, Cheng Zhang, Wenbo Gong

Bayesian causal discovery aims to infer the posterior distribution over causal models from observed data, quantifying epistemic uncertainty and benefiting downstream tasks. However, computational challenges arise due to joint inference over combinatorial space of Directed Acyclic Graphs (DAGs) and nonlinear functions. Despite recent progress towards efficient posterior inference over DAGs, existing methods are either limited to variational inference on node permutation matrices for linear causal models, leading to compromised inference accuracy, or continuous relaxation of adjacency matrices constrained by a DAG regularizer, which cannot ensure resulting graphs are DAGs. In this work, we introduce a scalable Bayesian causal discovery framework based on a combination of stochastic gradient Markov Chain Monte Carlo (SG-MCMC) and Variational Inference (VI) that overcomes these limitations. Our approach directly samples DAGs from the posterior without requiring any DAG regularization, simultaneously draws function parameter samples and is applicable to both linear and nonlinear causal models. To enable our approach, we derive a novel equivalence to the permutation-based DAG learning, which opens up possibilities of using any relaxed gradient estimator defined over permutations. To our knowledge, this is the first framework applying gradient-based MCMC sampling for causal discovery. Empirical evaluation on synthetic and real-world datasets demonstrate our approach's effectiveness compared to state-of-the-art baselines.

Miscellaneous Aspects of Machine Learning/Causality

Yaroslav Kivva, Saber Salehkaleybar, Negar Kiyavash

We consider the problem of estimating the causal effect of a treatment on an outcome in linear structural causal models (SCM) with latent confounders when we have access to a single proxy variable.Several methods (such as difference-in-difference (DiD) estimator or negative outcome control) have been proposed in this setting in the literature. However, these approaches require either restrictive assumptions on the data generating model or having access to at least two proxy variables.We propose a method to estimate the causal effect using cross moments between the treatment, the outcome, and the proxy variable. In particular, we show that the causal effect can be identified with simple arithmetic operations on the cross moments if the latent confounder in linear SCM is non-Gaussian.In this setting, DiD estimator provides an unbiased estimate only in the special case where the latent confounder has exactly the same direct causal effects on the outcomes in the pre-treatment and post-treatment phases. This translates to the common trend assumption in DiD, which we effectively relax.Additionally, we provide an impossibility result that shows the causal effect cannot be identified if the observational distribution over the treatment, the outcome, and the proxy is jointly Gaussian. Our experiments on both synthetic and real-world datasets showcase the effectivenessof the proposed approach in estimating the causal effect.

Miscellaneous Aspects of Machine Learning/Causality

Mingzhou Liu, Xinwei Sun, Lingjing Hu, Yizhou Wang

Inferring causal structures from time series data is the central interest of many scientific inquiries. A major barrier to such inference is the problem of subsampling, *i.e.*, the frequency of measurement is much lower than that of causal influence. To overcome this problem, numerous methods have been proposed, yet either was limited to the linear case or failed to achieve identifiability. In this paper, we propose a constraint-based algorithm that can identify the entire causal structure from subsampled time series, without any parametric constraint. Our observation is that the challenge of subsampling arises mainly from hidden variables at the unobserved time steps. Meanwhile, every hidden variable has an observed proxy, which is essentially itself at some observable time in the future, benefiting from the temporal structure. Based on these, we can leverage the proxies to remove the bias induced by the hidden variables and hence achieve identifiability. Following this intuition, we propose a proxy-based causal discovery algorithm. Our algorithm is nonparametric and can achieve full causal identification. Theoretical advantages are reflected in synthetic and real-world experiments.

Miscellaneous Aspects of Machine Learning/Causality

Dennis Frauen, Valentyn Melnychuk, Stefan Feuerriegel

Causal inference from observational data is crucial for many disciplines such as medicine and economics. However, sharp bounds for causal effects under relaxations of the unconfoundedness assumption (causal sensitivity analysis) are subject to ongoing research. So far, works with sharp bounds are restricted to fairly simple settings (e.g., a single binary treatment). In this paper, we propose a unified framework for causal sensitivity analysis under unobserved confounding in various settings. For this, we propose a flexible generalization of the marginal sensitivity model (MSM) and then derive sharp bounds for a large class of causal effects. This includes (conditional) average treatment effects, effects for mediation analysis and path analysis, and distributional effects. Furthermore, our sensitivity model is applicable to discrete, continuous, and time-varying treatments. It allows us to interpret the partial identification problem under unobserved confounding as a distribution shift in the latent confounders while evaluating the causal effect of interest. In the special case of a single binary treatment, our bounds for (conditional) average treatment effects coincide with recent optimality results for causal sensitivity analysis. Finally, we propose a scalable algorithm to estimate our sharp bounds from observational data.

Miscellaneous Aspects of Machine Learning/Causality

Xiangyu Sun, Oliver Schulte

A fundamental problem of causal discovery is cause-effect inference, to learn the correct causal direction between two random variables. Significant progress has been made through modelling the effect as a function of its cause and a noise term, which allows us to leverage assumptions about the generating function class. The recently introduced heteroscedastic location-scale noise functional models (LSNMs) combine expressive power with identifiability guarantees. LSNM model selection based on maximizing likelihood achieves state-of-the-art accuracy, when the noise distributions are correctly specified. However, through an extensive empirical evaluation, we demonstrate that the accuracy deteriorates sharply when the form of the noise distribution is misspecified by the user. Our analysis shows that the failure occurs mainly when the conditional variance in the anti-causal direction is smaller than that in the causal direction. As an alternative, we find that causal model selection through residual independence testing is much more robust to noise misspecification and misleading conditional variance.

Miscellaneous Aspects of Machine Learning/Causality

Shuai Li, Yingjie Zhang, Hongtu Zhu, Christina Wang, Hai Shu, Ziqi Chen, Zhuoran Sun, Yanfeng Yang

Conditional independence (CI) testing is a fundamental task in statistics and machine learning, but its effectiveness is hindered by the challenges posed by high-dimensional conditioning variables and limited data samples. This article introduces a novel testing approach to address these challenges and enhance control of the type I error while achieving high power under alternative hypotheses. The proposed approach incorporates a computationally efficient classifier-based conditional mutual information (CMI) estimator, capable of capturing intricate dependence structures among variables. To approximate a distribution encoding the null hypothesis, a $k$-nearest-neighbor local sampling strategy is employed. An important advantage of this approach is its ability to operate without assumptions about distribution forms or feature dependencies. Furthermore, it eliminates the need to derive asymptotic null distributions for the estimated CMI and avoids dataset splitting, making it particularly suitable for small datasets. The method presented in this article demonstrates asymptotic control of the type I error and consistency against all alternative hypotheses. Extensive analyses using both synthetic and real data highlight the computational efficiency of the proposed test. Moreover, it outperforms existing state-of-the-art methods in terms of type I and II errors, even in scenarios with high-dimensional conditioning sets. Additionally, the proposed approach exhibits robustness in the presence of heavy-tailed data.

Miscellaneous Aspects of Machine Learning/Causality

Qianyi Chen, Bo Li, Lu Deng, Yong Wang

Online A/B tests have become increasingly popular and important for social platforms. However, accurately estimating the global average treatment effect (GATE) has proven to be challenging due to network interference, which violates the Stable Unit Treatment Value Assumption (SUTVA) and poses great challenge to experimental design. Existing network experimental design research was mostly based on the unbiased Horvitz-Thompson (HT) estimator with substantial data trimming to ensure unbiasedness at the price of high resultant estimation variance. In this paper, we strive to balance the bias and variance in designing randomized network experiments. Under a potential outcome model with 1-hop interference, we derive the bias and variance of the standard HT estimator and reveal their relation to the network topological structure and the covariance of the treatment assignment vector. We then propose to formulate the experimental design problem as to optimize the covariance matrix of the treatment assignment vector to achieve the bias and variance balance by minimizing the mean squared error (MSE) of the estimator. An efficient projected gradient descent algorithm is presented to the implement of the desired randomization scheme. Finally, we carry out extensive simulation studies to demonstrate the advantages of our proposed method over other existing methods in many settings, with different levels of model misspecification.

Miscellaneous Aspects of Machine Learning/Causality

Mateusz Olko, Michał Zając, Aleksandra Nowak, Nino Scherrer, Yashas Annadani, Stefan Bauer, Łukasz Kuciński, Piotr Miłoś

Inferring causal structure from data is a challenging task of fundamental importance in science. Often, observational data alone is not enough to uniquely identify a system’s causal structure. The use of interventional data can address this issue, however, acquiring these samples typically demands a considerable investment of time and physical or financial resources. In this work, we are concerned with the acquisition of interventional data in a targeted manner to minimize the number of required experiments. We propose a novel Gradient-based Intervention Targeting method, abbreviated GIT, that ’trusts’ the gradient estimator of a gradient-based causal discovery framework to provide signals for the intervention targeting function. We provide extensive experiments in simulated and real-world datasets and demonstrate that GIT performs on par with competitive baselines, surpassing them in the low-data regime.

Miscellaneous Aspects of Machine Learning/Causality

Murat Kocaoglu

Constraint-based causal discovery algorithms learn part of the causal graph structure by systematically testing conditional independences observed in the data. These algorithms, such as the PC algorithm and its variants, rely on graphical characterizations of the so-called equivalence class of causal graphs proposed by Pearl. However, constraint-based causal discovery algorithms struggle when data is limited since conditional independence tests quickly lose their statistical power, especially when the conditioning set is large. To address this, we propose using conditional independence tests where the size of the conditioning set is upper bounded by some integer k for robust causal discovery. The existing graphical characterizations of the equivalence classes of causal graphs are not applicable when we cannot leverage all the conditional independence statements. We first define the notion of k-Markov equivalence: Two causal graphs are k-Markov equivalent if they entail the same conditional independence constraints where the conditioning set size is upper bounded by k. We propose a novel representation that allows us to graphically characterize k-Markov equivalence between two causal graphs. We propose a sound constraint-based algorithm called the k-PC algorithm for learning this equivalence class. Finally, we conduct synthetic, and semi-synthetic experiments to demonstrate that the k-PC algorithm enables more robust causal discovery in the small sample regime compared to the baseline algorithms.