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Xuzhe Zhang, Yuhao Wu, Elsa Angelini, Ang Li, Jia Guo, Jerod M. Rasmussen, Thomas G. O'Connor, Pathik D. Wadhwa, Andrea Parolin Jackowski, Hai Li 等

Robust segmentation is critical for deriving quantitative measures from large-scale multi-center and longitudinal medical scans. Manually annotating medical scans however is expensive and labor-intensive and may not always be available in every domain. Unsupervised domain adaptation (UDA) is a well-studied technique that alleviates this label-scarcity problem by leveraging available labels from another domain. In this study we introduce Masked Autoencoding and Pseudo-Labeling Segmentation (MAPSeg) a unified UDA framework with great versatility and superior performance for heterogeneous and volumetric medical image segmentation. To the best of our knowledge this is the first study that systematically reviews and develops a framework to tackle four different domain shifts in medical image segmentation. More importantly MAPSeg is the first framework that can be applied to centralized federated and test-time UDA while maintaining comparable performance. We compare MAPSeg with previous state-of-the-art methods on a private infant brain MRI dataset and a public cardiac CT-MRI dataset and MAPSeg outperforms others by a large margin (10.5 Dice improvement on the private MRI dataset and 5.7 on the public CT-MRI dataset). MAPSeg poses great practical value and can be applied to real-world problems. GitHub: https://github.com/XuzheZ/MAPSeg/.

Zhe Li, Zhangyang Gao, Cheng Tan, Bocheng Ren, Laurence T. Yang, Stan Z. Li

The pre-training architectures of large language models encompass various types including autoencoding models autoregressive models and encoder-decoder models. We posit that any modality can potentially benefit from a large language model as long as it undergoes vector quantization to become discrete tokens. Inspired by the General Language Model we propose a General Point Model (GPM) that seamlessly integrates autoencoding and autoregressive tasks in a point cloud transformer. This model is versatile allowing fine-tuning for downstream point cloud representation tasks as well as unconditional and conditional generation tasks. GPM enhances masked prediction in autoencoding through various forms of mask padding tasks leading to improved performance in point cloud understanding. Additionally GPM demonstrates highly competitive results in unconditional point cloud generation tasks even exhibiting the potential for conditional generation tasks by modifying the input's conditional information. Compared to models like Point-BERT MaskPoint and PointMAE our GPM achieves superior performance in point cloud understanding tasks. Furthermore the integration of autoregressive and autoencoding within the same transformer underscores its versatility across different downstream tasks.

Kejia Yin, Varshanth Rao, Ruowei Jiang, Xudong Liu, Parham Aarabi, David B. Lindell

Self-supervised landmark estimation is a challenging task that demands the formation of locally distinct feature representations to identify sparse facial landmarks in the absence of annotated data. To tackle this task existing state-of-the-art (SOTA) methods (1) extract coarse features from backbones that are trained with instance-level self-supervised learning (SSL) paradigms which neglect the dense prediction nature of the task (2) aggregate them into memory-intensive hypercolumn formations and (3) supervise lightweight projector networks to naively establish full local correspondences among all pairs of spatial features. In this paper we introduce SCE-MAE a framework that (1) leverages the MAE [??] a region-level SSL method that naturally better suits the landmark prediction task (2) operates on the vanilla feature map instead of on expensive hypercolumns and (3) employs a Correspondence Approximation and Refinement Block (CARB) that utilizes a simple density peak clustering algorithm and our proposed Locality-Constrained Repellence Loss to directly hone only select local correspondences. We demonstrate through extensive experiments that SCE-MAE is highly effective and robust outperforming existing SOTA methods by large margins of 20%-44% on the landmark matching and 9%-15% on the landmark detection tasks.

Pritom Saha Akash, Kevin Chen-Chuan Chang

Topic modeling is a powerful technique for uncovering hidden themes within a collection of documents. However, the effectiveness of traditional topic models often relies on sufficient word co-occurrence, which is lacking in short texts. Therefore, existing approaches, whether probabilistic or neural, frequently struggle to extract meaningful patterns from such data, resulting in incoherent topics. To address this challenge, we propose a novel approach that leverages large language models (LLMs) to extend short texts into more detailed sequences before applying topic modeling. To further improve the efficiency and solve the problem of semantic inconsistency from LLM-generated texts, we propose to use prefix tuning to train a smaller language model coupled with a variational autoencoder for short-text topic modeling. Our method significantly improves short-text topic modeling performance, as demonstrated by extensive experiments on real-world datasets with extreme data sparsity, outperforming current state-of-the-art topic models.

Yongjing Yin, Wenyang Gao, Haodong Wu, Jianhao Yan, Yue Zhang

This paper explores the application of Variational Autoencoders (VAE) in text generation, focusing on overcoming challenges like posterior collapse and the limitations of simplistic prior distributions. We investigate a transition from VAE to text autoencoders (AE), which model a compact latent space and preserves the capability of the language model itself. Our method involves layer-wise latent vectors regularized by orthogonal constraints to encourage distinct semantic spaces. In particular, we estimate an empirical prior online from the learned latent vectors to support sampling during generation like VAE. Experimental results on standard benchmarks demonstrate that the autoencoders generate higher quality and more diverse text than the VAE-based Transformer baselines, offering an effective alternative for generative language modeling.

Yuncheng Hua, Yujin Huang, Shuo Huang, Tao Feng, Lizhen Qu, Christopher Bain, Richard Bassed, Reza Haf

This paper tackles the task of emotion-cause pair extraction in the unsupervised domain adaptation setting.The problem is challenging as the distributions of the events causing emotions in target domains are dramatically different than those in source domains, despite the distributions of emotional expressions between domains are overlapped. Inspired by causal discovery,we propose a novel deep latent model in the variational autoencoder (VAE) framework, which not only captures the underlying latent structures of data but also utilizes the easily transferable knowledge of emotions as the bridge to link the distributions of events in different domains. To facilitate knowledge transfer across domains, we also propose a novel variational posterior regularization technique to disentangle the latent representations of emotions from those of events in order to mitigate the damage caused by the spurious correlations related to the events in source domains. Through extensive experiments, we demonstrate that our model outperforms the strongest baseline by approximately 11.05% on a Chinese benchmark and 2.45% on a English benchmark in terms of weighted-average F1 score. We have released our source code and the generated dataset publicly at: https://github.com/tk1363704/CAREL-VAE.

Yinhan He, Zaiyi Zheng, Patrick Soga, Yaochen Zhu, Yushun Dong, Jundong Li

In recent years, Graph Neural Networks (GNNs) have become successful in molecular property prediction tasks such as toxicity analysis. However, due to the black-box nature of GNNs, their outputs can be concerning in high-stakes decision-making scenarios, e.g., drug discovery. Facing such an issue, Graph Counterfactual Explanation (GCE) has emerged as a promising approach to improve GNN transparency. However, current GCE methods usually fail to take domain-specific knowledge into consideration, which can result in outputs that are not easily comprehensible by humans. To address this challenge, we propose a novel GCE method, LLM-GCE, to unleash the power of large language models (LLMs) in explaining GNNs for molecular property prediction. Specifically, we utilize an autoencoder to generate the counterfactual graph topology from a set of counterfactual text pairs (CTPs) based on an input graph. Meanwhile, we also incorporate a CTP dynamic feedback module to mitigate LLM hallucination, which provides intermediate feedback derived from the generated counterfactuals as an attempt to give more faithful guidance. Extensive experiments demonstrate the superior performance of LLM-GCE. Our code is released on https://github.com/YinhanHe123/new_LLM4GNNExplanation.

Causality

Hongyuan Tao, Hang Yu, Jianguo Li

Intervention Target Estimation (ITE) is vital for both understanding and decision-making in complex systems, yet it remains underexplored. Current ITE methods are hampered by their inability to learn from distinct intervention instances collaboratively and to incorporate rich insights from labeled data, which leads to inefficiencies such as the need for re-estimation of intervention targets with minor data changes or alterations in causal graphs. In this paper, we propose DeepITE, an innovative deep learning framework designed around a variational graph autoencoder. DeepITE can concurrently learn from both unlabeled and labeled data with different intervention targets and causal graphs, harnessing correlated information in a self or semi-supervised manner. The model's inference capabilities allow for the immediate identification of intervention targets on unseen samples and novel causal graphs, circumventing the need for retraining. Our extensive testing confirms that DeepITE not only surpasses 13 baseline methods in the Recall@k metric but also demonstrates expeditious inference times, particularly on large graphs. Moreover, incorporating a modest fraction of labeled data (5-10\%) substantially enhances DeepITE's performance, further solidifying its practical applicability. Our source code is available at https://github.com/alipay/DeepITE.

Computer Vision

Seunggeun Chi, Pin-Hao Huang, Enna Sachdeva, Hengbo Ma, Karthik Ramani, Kwonjoon Lee

We study the problem of estimating the body movements of a camera wearer from egocentric videos. Current methods for ego-body pose estimation rely on temporally dense sensor data, such as IMU measurements from spatially sparse body parts like the head and hands. However, we propose that even temporally sparse observations, such as hand poses captured intermittently from egocentric videos during natural or periodic hand movements, can effectively constrain overall body motion. Naively applying diffusion models to generate full-body pose from head pose and sparse hand pose leads to suboptimal results. To overcome this, we develop a two-stage approach that decomposes the problem into temporal completion and spatial completion. First, our method employs masked autoencoders to impute hand trajectories by leveraging the spatiotemporal correlations between the head pose sequence and intermittent hand poses, providing uncertainty estimates. Subsequently, we employ conditional diffusion models to generate plausible full-body motions based on these temporally dense trajectories of the head and hands, guided by the uncertainty estimates from the imputation. The effectiveness of our methods was rigorously tested and validated through comprehensive experiments conducted on various HMD setup with AMASS and Ego-Exo4D datasets. Project page: https://sgchi.github.io/dsposer

Deep Learning · Self-Supervised Learning

Jeongwoo Shin, Inseo Lee, Junho Lee, Joonseok Lee

Masked Autoencoder (MAE) is a self-supervised approach for representation learning, widely applicable to a variety of downstream tasks in computer vision. In spite of its success, it is still not fully uncovered what and how MAE exactly learns. In this paper, with an in-depth analysis, we discover that MAE intrinsically learns pattern-based patch-level clustering from surprisingly early stages of pre-training. Upon this understanding, we propose self-guided masked autoencoder, which internally generates informed mask by utilizing its progress in patch clustering, substituting the naive random masking of the vanilla MAE. Our approach significantly boosts its learning process without relying on any external models or supplementary information, keeping the benefit of self-supervised nature of MAE intact. Comprehensive experiments on various downstream tasks verify the effectiveness of the proposed method.

Deep Learning · Self-Supervised Learning

Zhiqiang Chen, Guofan Fan, Jinying Gao, Lei Ma, Bo Lei, Tiejun Huang, Shan Yu

The human brain exhibits a strong ability to spontaneously associate different visual attributes of the same or similar visual scene, such as associating sketches and graffiti with real-world visual objects, usually without supervising information. In contrast, in the field of artificial intelligence, controllable generation methods like ControlNet heavily rely on annotated training datasets such as depth maps, semantic segmentation maps, and poses, which limits the method’s scalability. Inspired by the neural mechanisms that may contribute to the brain’s associative power, specifically the cortical modularization and hippocampal pattern completion, here we propose a self-supervised controllable generation (SCG) framework. Firstly, we introduce an equivariance constraint to promote inter-module independence and intra-module correlation in a modular autoencoder network, thereby achieving functional specialization. Subsequently, based on these specialized modules, we employ a self-supervised pattern completion approach for controllable generation training. Experimental results demonstrate that the proposed modular autoencoder effectively achieves functional specialization, including the modular processing of color, brightness, and edge detection, and exhibits brain-like features including orientation selectivity, color antagonism, and center-surround receptive fields. Through self-supervised training, associative generation capabilities spontaneously emerge in SCG, demonstrating excellent zero-shot generalization ability to various tasks such as superresolution, dehaze and associative or conditional generation on painting, sketches, and ancient graffiti. Compared to the previous representative method ControlNet, our proposed approach not only demonstrates superior robustness in more challenging high-noise scenarios but also possesses more promising scalability potential due to its self-supervised manner. Codes are released on Github and Gitee.

Computer Vision · Video Generation

Sijie Zhao, Yong Zhang, Xiaodong Cun, Shaoshu Yang, Muyao Niu, Xiaoyu Li, Wenbo HU, Ying Shan

Spatio-temporal compression of videos, utilizing networks such as Variational Autoencoders (VAE), plays a crucial role in OpenAI's SORA and numerous other video generative models. For instance, many LLM-like video models learn the distribution of discrete tokens derived from 3D VAEs within the VQVAE framework, while most diffusion-based video models capture the distribution of continuous latent extracted by 2D VAEs without quantization. The temporal compression is simply realized by uniform frame sampling which results in unsmooth motion between consecutive frames. Currently, there lacks of a commonly used continuous video (3D) VAE for latent diffusion-based video models in the research community. Moreover, since current diffusion-based approaches are often implemented using pre-trained text-to-image (T2I) models, directly training a video VAE without considering the compatibility with existing T2I models will result in a latent space gap between them, which will take huge computational resources for training to bridge the gap even with the T2I models as initialization. To address this issue, we propose a method for training a video VAE of latent video models, namely CV-VAE, whose latent space is compatible with that of a given image VAE, e.g., image VAE of Stable Diffusion (SD). The compatibility is achieved by the proposed novel latent space regularization, which involves formulating a regularization loss using the image VAE. Benefiting from the latent space compatibility, video models can be trained seamlessly from pre-trained T2I or video models in a truly spatio-temporally compressed latent space, rather than simply sampling video frames at equal intervals. To improve the training efficiency, we also design a novel architecture for the video VAE. With our CV-VAE, existing video models can generate four times more frames with minimal finetuning. Extensive experiments are conducted to demonstrate the effectiveness of the proposed video VAE.

Interpretability

Jacob Dunefsky, Philippe Chlenski, Neel Nanda

A key goal in mechanistic interpretability is circuit analysis: finding sparse subgraphs of models corresponding to specific behaviors or capabilities. However, MLP sublayers make fine-grained circuit analysis on transformer-based language models difficult. In particular, interpretable features—such as those found by sparse autoencoders (SAEs)—are typically linear combinations of extremely many neurons, each with its own nonlinearity to account for. Circuit analysis in this setting thus either yields intractably large circuits or fails to disentangle local and global behavior. To address this we explore **transcoders**, which seek to faithfully approximate a densely activating MLP layer with a wider, sparsely-activating MLP layer. We introduce a novel method for using transcoders to perform weights-based circuit analysis through MLP sublayers. The resulting circuits neatly factorize into input-dependent and input-invariant terms. We then successfully train transcoders on language models with 120M, 410M, and 1.4B parameters, and find them to perform at least on par with SAEs in terms of sparsity, faithfulness, and human-interpretability. Finally, we apply transcoders to reverse-engineer unknown circuits in the model, and we obtain novel insights regarding the "greater-than circuit" in GPT2-small. Our results suggest that transcoders can prove effective in decomposing model computations involving MLPs into interpretable circuits. Code is available at https://github.com/jacobdunefsky/transcoder_circuits/

Deep Learning · Self-Supervised Learning

Xiangdong Zhang, Shaofeng Zhang, Junchi Yan

Masked autoencoder has been widely explored in point cloud self-supervised learning, whereby the point cloud is generally divided into visible and masked parts. These methods typically include an encoder accepting visible patches (normalized) and corresponding patch centers (position) as input, with the decoder accepting the output of the encoder and the centers (position) of the masked parts to reconstruct each point in the masked patches. Then, the pre-trained encoders are used for downstream tasks. In this paper, we show a motivating empirical result that when directly feeding the centers of masked patches to the decoder without information from the encoder, it still reconstructs well. In other words, the centers of patches are important and the reconstruction objective does not necessarily rely on representations of the encoder, thus preventing the encoder from learning semantic representations. Based on this key observation, we propose a simple yet effective method, $i.e.$, learning to \textbf{P}redict \textbf{C}enters for \textbf{P}oint \textbf{M}asked \textbf{A}uto\textbf{E}ncoders (\textbf{PCP-MAE}) which guides the model to learn to predict the significant centers and use the predicted centers to replace the directly provided centers. Specifically, we propose a Predicting Center Module (PCM) that shares parameters with the original encoder with extra cross-attention to predict centers. Our method is of high pre-training efficiency compared to other alternatives and achieves great improvement over Point-MAE, particularly surpassing it by \textbf{5.50\% on OBJ-BG, 6.03\% on OBJ-ONLY, and 5.17\% on PB-T50-RS} for 3D object classification on the ScanObjectNN dataset. The code is available at \url{https://github.com/aHapBean/PCP-MAE}.

Interpretability

Adam Karvonen, Benjamin Wright, Can Rager, Rico Angell, Jannik Brinkmann, Logan Smith, Claudio Mayrink Verdun, David Bau, Samuel Marks

What latent features are encoded in language model (LM) representations? Recent work on training sparse autoencoders (SAEs) to disentangle interpretable features in LM representations has shown significant promise. However, evaluating the quality of these SAEs is difficult because we lack a ground-truth collection of interpretable features which we expect good SAEs to identify. We thus propose to measure progress in interpretable dictionary learning by working in the setting of LMs trained on Chess and Othello transcripts. These settings carry natural collections of interpretable features—for example, “there is a knight on F3”—which we leverage into metrics for SAE quality. To guide progress in interpretable dictionary learning, we introduce a new SAE training technique, $p$-annealing, which demonstrates improved performance on our metric.

Graph Neural Networks

Shijin Duan, Ruyi Ding, Jiaxing He, Aidong Ding, Yunsi Fei, Xiaolin Xu

Graph-structured data is integral to many applications, prompting the development of various graph representation methods. Graph autoencoders (GAEs), in particular, reconstruct graph structures from node embeddings. Current GAE models primarily utilize self-correlation to represent graph structures and focus on node-level tasks, often overlooking multi-graph scenarios. Our theoretical analysis indicates that self-correlation generally falls short in accurately representing specific graph features such as islands, symmetrical structures, and directional edges, particularly in smaller or multiple graph contexts.To address these limitations, we introduce a cross-correlation mechanism that significantly enhances the GAE representational capabilities. Additionally, we propose the GraphCroc, a new GAE that supports flexible encoder architectures tailored for various downstream tasks and ensures robust structural reconstruction, through a mirrored encoding-decoding process. This model also tackles the challenge of representation bias during optimization by implementing a loss-balancing strategy. Both theoretical analysis and numerical evaluations demonstrate that our methodology significantly outperforms existing self-correlation-based GAEs in graph structure reconstruction.

Computer Vision

Xueying Jiang, Sheng Jin, Xiaoqin Zhang, Ling Shao, Shijian Lu

Monocular 3D object detection aims for precise 3D localization and identification of objects from a single-view image. Despite its recent progress, it often struggles while handling pervasive object occlusions that tend to complicate and degrade the prediction of object dimensions, depths, and orientations. We design MonoMAE, a monocular 3D detector inspired by Masked Autoencoders that addresses the object occlusion issue by masking and reconstructing objects in the feature space. MonoMAE consists of two novel designs. The first is depth-aware masking that selectively masks certain parts of non-occluded object queries in the feature space for simulating occluded object queries for network training. It masks non-occluded object queries by balancing the masked and preserved query portions adaptively according to the depth information. The second is lightweight query completion that works with the depth-aware masking to learn to reconstruct and complete the masked object queries. With the proposed feature-space occlusion and completion, MonoMAE learns enriched 3D representations that achieve superior monocular 3D detection performance qualitatively and quantitatively for both occluded and non-occluded objects. Additionally, MonoMAE learns generalizable representations that can work well in new domains.

Generative Models

Yongxin Zhu, Bocheng Li, Hang Zhang, Xin Li, Linli Xu, Lidong Bing

Latent-based image generative models, such as Latent Diffusion Models (LDMs) and Mask Image Models (MIMs), have achieved notable success in image generation tasks. These models typically leverage reconstructive autoencoders like VQGAN or VAE to encode pixels into a more compact latent space and learn the data distribution in the latent space instead of directly from pixels. However, this practice raises a pertinent question: Is it truly the optimal choice? In response, we begin with an intriguing observation: despite sharing the same latent space, autoregressive models significantly lag behind LDMs and MIMs in image generation. This finding contrasts sharply with the field of NLP, where the autoregressive model GPT has established a commanding presence. To address this discrepancy, we introduce a unified perspective on the relationship between latent space and generative models, emphasizing the stability of latent space in image generative modeling. Furthermore, we propose a simple but effective discrete image tokenizer to stabilize the latent space for image generative modeling by applying K-Means on the latent features of self-supervised learning models. Experimental results show that image autoregressive modeling with our tokenizer (DiGIT) benefits both image understanding and image generation with the next token prediction principle, which is inherently straightforward for GPT models but challenging for other generative models. Remarkably, for the first time, a GPT-style autoregressive model for images outperforms LDMs, which also exhibits substantial improvement akin to GPT when scaling up model size. Our findings underscore the potential of an optimized latent space and the integration of discrete tokenization in advancing the capabilities of image generative models. The code is available at \url{https://github.com/DAMO-NLP-SG/DiGIT}.

Interpretability

Senthooran Rajamanoharan, Arthur Conmy, Lewis Smith, Tom Lieberum, Vikrant Varma, Janos Kramar, Rohin Shah, Neel Nanda

Recent work has found that sparse autoencoders (SAEs) are an effective technique for unsupervised discovery of interpretable features in language models' (LMs) activations, by finding sparse, linear reconstructions of those activations. We introduce the Gated Sparse Autoencoder (Gated SAE), which achieves a Pareto improvement over training with prevailing methods. In SAEs, the L1 penalty used to encourage sparsity introduces many undesirable biases, such as shrinkage -- systematic underestimation of feature activations. The key insight of Gated SAEs is to separate the functionality of (a) determining which directions to use and (b) estimating the magnitudes of those directions: this enables us to apply the L1 penalty only to the former, limiting the scope of undesirable side effects. Through training SAEs on LMs of up to 7B parameters we find that, in typical hyper-parameter ranges, Gated SAEs solve shrinkage, are similarly interpretable, and require half as many firing features to achieve comparable reconstruction fidelity.

Computer Vision

Yiwei Zhang, Jin Gao, Fudong Ge, Guan Luo, Bing Li, ZHAO-XIANG ZHANG, Haibin Ling, Weiming Hu

Bird's-eye-view (BEV) map layout estimation requires an accurate and full understanding of the semantics for the environmental elements around the ego car to make the results coherent and realistic. Due to the challenges posed by occlusion, unfavourable imaging conditions and low resolution, \emph{generating} the BEV semantic maps corresponding to corrupted or invalid areas in the perspective view (PV) is appealing very recently. \emph{The question is how to align the PV features with the generative models to facilitate the map estimation}. In this paper, we propose to utilize a generative model similar to the Vector Quantized-Variational AutoEncoder (VQ-VAE) to acquire prior knowledge for the high-level BEV semantics in the tokenized discrete space. Thanks to the obtained BEV tokens accompanied with a codebook embedding encapsulating the semantics for different BEV elements in the groundtruth maps, we are able to directly align the sparse backbone image features with the obtained BEV tokens from the discrete representation learning based on a specialized token decoder module, and finally generate high-quality BEV maps with the BEV codebook embedding serving as a bridge between PV and BEV. We evaluate the BEV map layout estimation performance of our model, termed VQ-Map, on both the nuScenes and Argoverse benchmarks, achieving 62.2/47.6 mean IoU for surround-view/monocular evaluation on nuScenes, as well as 73.4 IoU for monocular evaluation on Argoverse, which all set a new record for this map layout estimation task. The code and models are available on \url{https://github.com/Z1zyw/VQ-Map}.