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Applications · Neuroscience, Cognitive Science

Chengrui Li, Yunmiao Wang, Yule Wang, Weihan Li, Dieter Jaeger, Anqi Wu

Low-rank recurrent neural networks (lrRNNs) are a class of models that uncover low-dimensional latent dynamics underlying neural population activity. Although their functional connectivity is low-rank, it lacks independence interpretations, making it difficult to assign distinct computational roles to different latent dimensions. To address this, we propose the Factored Recurrent Neural Network (FacRNN), a generative lrRNN framework that assumes group-wise independence among latent dynamics while allowing flexible within-group entanglement. These independent latent groups allow latent dynamics to evolve separately, but are internally rich for complex computation. We reformulate the lrRNN under a variational autoencoder (VAE) framework, enabling us to introduce a partial correlation penalty that encourages independence between groups of latent dimensions. Experiments on synthetic, monkey M1, and mouse voltage imaging data show that FacRNN consistently improves the disentanglement and interpretability of learned neural latent trajectories in low-dimensional space and low-rank connectivity over baseline lrRNNs that do not encourage group-wise independence.

Applications · Neuroscience, Cognitive Science

Yifan Wang, Yijia Ma, Wen Li, Chenyu You

High-fidelity EEG generation is critical for alleviating data scarcity and addressing privacy constraints in large-scale neural modeling. Despite recent progress, most existing approaches formulate EEG generation via discrete denoising objectives, which inadequately reflect the inherently continuous temporal dynamics and spectral structure of neural activity. As a result, these methods often struggle to preserve long-range temporal dependencies and exhibit mismatches in the spectral and temporal structure of the generated signals. In this work, we argue that effective EEG generation requires models that operate directly on the continuous evolution of neural signals. We introduce Just EEG Transformer (JET), a generative framework based on conditional flow matching that models EEG as raw sequences evolving along continuous trajectories. By learning a smooth vector field that transports noise to the EEG data distribution, JET captures temporal continuity and transient dynamics without relying on discretized denoising schemes or domain-specific representations. To ensure that the learned dynamics remain consistent with key properties of EEG signals, we introduce principled constraints that preserve spectral structure, temporal stationarity, and signal-level statistics. Across three large-scale benchmarks, JET consistently achieves state-of-the-art performance, reducing TS-FID by over 40\% compared to strong baselines. Extensive analyses show that JET captures key structural properties of neural dynamics, providing a scalable and principled approach to EEG generation.

Applications · Neuroscience, Cognitive Science

Haitao Wu, Qirui Zhang, Zhouheng Yao, Shangquan Sun, Qihao Zheng, Mianxin Liu, Chi Zhang, Wanli Ouyang, Chunfeng Song, Changqing Zhang 等

Modeling the bidirectional correspondence between external sensory stimuli and internal neural activity has emerged as a critical frontier in neuroscience. However, existing approaches predominantly treat brain encoding and decoding as isolated tasks, relying heavily on unimodal alignment and external priors while overlooking the brain's intrinsic nature as a multimodal integration system. To address these limitations, we propose BrainJanus, the first unified brain foundation model that integrates brain, vision, and language within a single framework. Specifically, we introduce a Unified Brain Tokenizer to quantize continuous neural dynamics into discrete tokens aligned with visual and linguistic representations in a shared Omni space. Building on this, we utilize an All-in-One autoregressive architecture that leverages next-token prediction to enable seamless any-to-any generation, which encompasses image-to-brain and text-to-brain encoding, and brain-to-image and brain-to-text decoding. Extensive experiments demonstrate that BrainJanus achieves superior performance across diverse benchmarks. Furthermore, our framework exhibits zero-shot generalization and preserves interpretable biological topography, highlighting its potential as a general-purpose brain modeling paradigm. The code and pretrained models will be released to support further research.

Applications · Neuroscience, Cognitive Science

Shunchi Zhang, Jin Lu, Chuanyang Jin, Yichao Zhou, Zhining Zhang, Tianmin Shu

Effective real-world assistance requires AI agents with robust Theory of Mind (ToM): inferring human mental states from their behavior. Despite recent advances, several key challenges remain, including (1) online inference with robust uncertainty updates over multiple hypotheses; (2) efficient reasoning suitable for real-time assistance; and (3) the lack of ground-truth mental state annotations in real-world domains. We address these challenges by introducing *MindZero*, a self-supervised reinforcement learning framework that trains language models to perform efficient and robust online mental reasoning. During training, the model is rewarded for generating mental state hypotheses that maximize the likelihood of observed actions estimated by a planner, similar to model-based ToM reasoning. This method thus eliminates the need for explicit mental state annotations. After training, *MindZero* internalizes model-based reasoning, and performs mental inference in a single forward pass at test time. We evaluate *MindZero* in four challenging mental reasoning and AI assistance domains. *MindZero* matches the robustness of explicit model-based methods while significantly accelerating inference, outperforming state-of-the-art methods by a large margin. These results demonstrate that mental reasoning can be learned as a self-supervised skill, bridging the gap between robustness and efficiency in ToM modeling.

Applications · Neuroscience, Cognitive Science

Yongzhi She, Qihua Zhou, Yuhao Wang, Yaodong Huang, Jingcai Guo, Laizhong Cui

Recently, the spiking neural networks (SNNs) have shown great promise in enhancing AI task performance by utilizing the brain-inspired and energy-efficient computational paradigm via the binary (0/1) spikes. Modern SNNs, especially those based on transformers, often require FPGA accelerators or neuromorphic chips (e.g., Intel Loihi) to enable spike-driven computations. However, this domain-specific hardware is not always accessible on commodity edge devices like NVIDIA Jetsons, which may degrade SNNs' energy efficiency due to massive computational waste on inactive "0" spikes and finally undermine the usage boundary. This limitation raises an interesting question: is it possible to make SNNs edge-friendly and tame the computations mostly on active "1" spikes? In this paper, we present the answer yes and propose Spik4lite, which serves as a lightweight plug-and-play module to significantly improve SNN's performance between model accuracy and computational efficiency. The key is to refactor SNN's channel-wise neuromorphic sparsity by zeroing out low-efficiency channels while proactively compensating for the eliminated spikes. Different from prior methods mainly focusing on optimizing the theoretical synaptic operations, our design philosophy can evolve the SNNs into a physically compact manner, thus inherently saving more computational and energy costs. Extensive experiments based on real edge devices show that Spik4lite can be integrated into existing SNN baselines to further improve their accuracy-and-efficiency performance, guaranteeing the model accuracy while saving the computational and energy costs.

Applications · Neuroscience, Cognitive Science

Chenyu Liu, MUYUN JIANG, Pu Wan, Jinxin Pi, Jingying Ma, Xinliang Zhou, Peiliang Gong, Yi Ding, Chenyu Liu

Electroencephalography (EEG) foundation models (EFMs) have achieved strong performance across a wide range of downstream EEG tasks via pretraining and fine-tuning. Through empirical analysis, we observe that (i) no single EFM consistently dominates all tasks, yet identifying the task-specific optimal model by fine-tuning all EFMs introduces substantial computational overhead; and (ii) models with inferior task-level performance still exhibit strengths at the sample level as distinct architectures induce diverse inductive biases. These observations motivate EmBrace, a representation-centric framework for sample-aware knowledge fusion that avoids the constraints of parameter-level or output-level alignment. EmBrace synchronizes discriminative intermediate representations into a unified manifold and adaptively weights multiple EFMs at the sample level while selecting the most compatible model as the carrier. Extensive experiments across multiple EEG benchmarks demonstrate that EmBrace consistently improves over SOTA EFMs and generalizes effectively under cross-task settings.

Applications · Neuroscience, Cognitive Science

Runhe Zhou, Shanglin Li, Guanxiang Huang, Xinliang Zhou, Qibin Zhao, Motoaki Kawanabe, Yi Ding, Cuntai Guan

Electroencephalography (EEG)-based multimodal learning integrates brain signals with complementary modalities to improve mental state assessment, providing great clinical potential. The effectiveness of such paradigms largely depends on the representation learning on heterogeneous modalities. For EEG-based paradigms, one promising approach is to leverage their hierarchical structures, as recent studies have shown that both EEG and associated modalities (e.g., facial expressions) exhibit hierarchical structures reflecting complex cognitive processes. However, Euclidean embeddings struggle to represent these hierarchical structures due to their flat geometry, while hyperbolic spaces, with their exponential growth property, are naturally suited for them. In this work, we propose EEG-MoCE, a novel hyperbolic mixture-of-curvature experts framework designed for multimodal neurotechnology. EEG-MoCE assigns each modality to an expert in a learnable-curvature hyperbolic space, enabling adaptive modeling of its intrinsic geometry. A curvature-aware fusion strategy then dynamically weights experts, emphasizing modalities with richer hierarchical information. Extensive experiments on benchmark datasets demonstrate that EEG-MoCE achieves state-of-the-art performance, including emotion recognition, sleep staging, and cognitive assessment.

Applications · Neuroscience, Cognitive Science

Jea Kwon, Dong-Kyum Kim, Jiwon Kim, Yonghyun Kim, Woong Kook, MEEYOUNG CHA

Memory formation is fundamental to intelligence, yet whether deep neural networks preserve identifiable memory traces—analogous to biological memory units—remains an open question. This work introduces a geometric framework to identify such "AI engrams," by formalizing the neuroscientific criteria of specificity, reactivation, sufficiency, and necessity into a constrained inverse problem. We derive a closed-form estimator that isolates individual memory traces from globally entangled parameters. Theoretical analysis reveals that this biologically-derived solution corresponds to a natural gradient update on the parameter manifold. AI engrams enable surgical manipulation of learned knowledge: any subset of memories can be composed or erased through linear arithmetic, without iterative optimization. Experiments ranging from simple MLPs to LLMs demonstrate the causal validity and substantial scalability of AI engrams. Together, these results bridge theories of biological memory and artificial representation learning, offering geometric insight into how deep networks simultaneously support functional specificity within distributed storage.

Applications · Neuroscience, Cognitive Science

Jea Kwon, Dong-Kyum Kim, Jiwon Kim, Yonghyun Kim, Woong Kook, MEEYOUNG CHA

Memory formation is fundamental to intelligence, yet whether deep neural networks preserve identifiable memory traces—analogous to biological memory units—remains an open question. This work introduces a geometric framework to identify such "AI engrams," by formalizing the neuroscientific criteria of specificity, reactivation, sufficiency, and necessity into a constrained inverse problem. We derive a closed-form estimator that isolates individual memory traces from globally entangled parameters. Theoretical analysis reveals that this biologically-derived solution corresponds to a natural gradient update on the parameter manifold. AI engrams enable surgical manipulation of learned knowledge: any subset of memories can be composed or erased through linear arithmetic, without iterative optimization. Experiments ranging from simple MLPs to LLMs demonstrate the causal validity and substantial scalability of AI engrams. Together, these results bridge theories of biological memory and artificial representation learning, offering geometric insight into how deep networks simultaneously support functional specificity within distributed storage.

Applications · Neuroscience, Cognitive Science

Mathis Pink, Vy Vo, Qinyuan Wu, Jianing Mu, Javier Turek, Uri Hasson, Kenneth Norman, Sebastian Michelmann, Alexander Huth, Mariya Toneva

Human episodic memory supports the retrieval of experiences that unfold over extended timescales, yet the computational mechanisms underlying this ability remain debated due to the difficulty of mechanistic accessibility in long-term memory experiments in humans. Long-context LLMs may offer promising ways to reveal plausible computational mechanisms that drive this type of retrieval. Here, we investigate whether and, if so, how LLMs capture core behavioral signatures of humans of a central aspect of episodic memory via a temporal order memory task. Using a new dataset of human behavior based on a full-length novel, we show substantial similarities between the human and model performances on the temporal order memory task. We next perform long-context mechanistic interpretability analyses to reveal the underlying mechanisms in the model, and find that model performance relies on a one-dimensional temporal code that is reinstated during retrieval by a single time-reinstatement attention head. These findings support temporal context reinstatement as an important mechanism for episodic-like temporal-order memory in LLMs, offering new insights into how temporal aspects of long-term episodic memory may be instantiated in both artificial and biological systems.

Applications · Neuroscience, Cognitive Science

Fenghao Liu, Yipeng Shen, Peng Chen, Qian Zheng, Peng Lin, Gang Pan

Processing long sequence data such as speech requires models to maintain long-term dependencies, which is challenging for recurrent spiking neural networks due to high temporal dynamics in neuron models that leak stored information in their membrane potentials, and due to vanishing gradients during backpropagation through time. These issues can be mitigated by employing more complex neuron designs, such as ALIF and TC-LIF, but these neuron-level solutions often incur high computational costs and complicate hardware implementation, undermining the efficiency advantages of Spiking neural networks. Here we propose an architectural-level solution that leverages the dynamical interactions of a few leaky integrate-and-fire (LIF) neurons to enhance long-term information storage. The memory capability of this LIF-based micro-circuit is adaptively modulated by global recurrent connections of the recurrent spiking neural network, contributing to selective enhancement of temporal information retention, and promoting stable gradient propagation through time. The proposed model outperforms previous methods including LSTM, ALIF, and TC-LIF in long sequence tasks, achieving 96.52\% accuracy on the PS-MNIST dataset. Furthermore, our method also provides a compelling efficiency advantage, yielding up to 277$\times$ computational efficiency improvement compared to conventional models such as LSTM. This work paves the way for building cost-effective, hardware-friendly, and interpretable spiking neural networks for long sequence modeling.

Applications · Neuroscience, Cognitive Science

Mohammad Hosseini, Eray Erturk, Saba Hashemi, Maryam Shanechi

Large-scale, multi-subject widefield calcium imaging provides unprecedented access to brain-wide cortical dynamics. However, the high dimensionality, complex spatiotemporal structure, and substantial task-irrelevant activity in widefield recordings have largely restricted modeling efforts to single-session analyses, limiting scalability and generalization. While cross-subject foundation-style modeling has been explored for some neural modalities, cross-subject models for widefield calcium imaging have not yet been demonstrated, and subject-invariant zero-shot behavior decoding remains elusive in neurofoundation modeling more broadly. Towards foundation modeling of widefield data, we introduce WiCAT, a multi-subject model that leverages self-supervised pretraining to both outperform single-session models and enable zero-shot behavior decoding on unseen subjects. WiCAT introduces an atlas-grounded tokenization scheme without session-specific components and learns globally shared spatiotemporal representations. Across multiple widefield datasets, the pretrained model supports lightweight downstream decoding, transfers across subjects, tasks, and datasets, and outperforms baseline models. Notably, the model also achieves robust zero-shot continuous behavior decoding and left-out brain region reconstruction on unseen subjects.

Applications · Neuroscience, Cognitive Science

Hyun-Jong Lee, Jae-Han Lim

Spiking Neural Networks (SNNs) are regarded as the third generation of neural networks, offering energy-efficient computing for neuromorphic devices. Despite this benefit, hardware-implemented SNNs are vulnerable to hardware faults, which severely degrade their performance. Previous approaches have required direct access to internal SNN circuits to modify weights or monitor internal states, limiting their practicality. Improving robustness to hardware faults without such access remains challenging. To overcome this challenge, we propose a fault-tolerant mechanism that operates only through input data control. The hardware faults reduce the usable learning capacity of SNNs, leading to a mismatch between the instantaneous input load and the degraded network dynamics. Our mechanism mitigates this mismatch by dividing each input sample into multiple fragments, redistributing the input load via a learnable fragmentation strategy. The strategy learns two key fragmentation components: 1) division boundaries and 2) the number of fragments. To our knowledge, this is the first to improve the fault tolerance of SNNs without accessing the internal SNN circuit. Experimental results demonstrate that our mechanism consistently outperforms previous methods in various SNN models, achieving these gains without direct access to internal circuits. Furthermore, we validate its effectiveness on SNNs implemented with a physical FPGA platform, confirming its practicality.

Applications · Neuroscience, Cognitive Science

Michael Ibrahim, Hanqi Zhao, Eli Sennesh, Zhi Li, Anqi Wu, Jacob Yates, Chengrui Li, Hadi Vafaii

Poisson-distributed latent variable models are widely used in computational neuroscience, but differentiating through discrete stochastic samples remains challenging. Two approaches address this: *Exponential Arrival Time* (EAT) simulation and *Gumbel-SoftMax* (GSM) relaxation. We provide the first systematic comparison of these methods, along with practical guidance for practitioners. Our main technical contribution is a modification to the EAT method that theoretically guarantees an unbiased first moment (exactly matching the firing rate), and reduces second-moment bias. We evaluate these methods on their distributional fidelity, gradient quality, and performance on two tasks: (1) variational autoencoders with Poisson latents, and (2) partially observable generalized linear models, where latent neural connectivity must be inferred from observed spike trains. Across all metrics, our modified EAT method exhibits better overall performance (often comparable to exact gradients), and substantially higher robustness to hyperparameter choices. Together, our results clarify the trade-offs between these methods and offer concrete recommendations for practitioners working with Poisson latent variable models.

Applications · Neuroscience, Cognitive Science

Yunzhi Tian, Dekui Wang, Jun Feng, Qirong Bu, Wei Zhou, Xingxing Hao

Multi-view learning has been widely applied for sleep stage classification using multi-modal data. However, existing methods typically assume that different modalities are well-aligned, which is often unattainable in real-world scenarios, thereby compromising the reliability of the staging results. In this paper, we propose ConfSleepNet, a conflict-aware evidential framework that dynamically resolves inter-view conflicts. The framework consists of multi-view evidence extraction and conflict-aware aggregation. In the first phase, it learns category-related evidence from different modalities, which represents the degree of support for individual sleep stages. Considering the inherent characteristics of varying modalities, we propose adaptive category structures for different modalities to promote more reasonable evidence learning. In the second phase, view-specific opinions, including prediction results and uncertainty, are constructed from the learned evidence. Notably, we propose a novel conflict-aware aggregation method that integrates these view-specific opinions into a reliable joint decision. This mechanism can effectively resolve conflicts among opinions and synthesize them into a reliable joint decision. Both theoretical analysis and experimental results demonstrate the effectiveness of ConfSleepNet in sleep staging tasks. The code is available at https://anonymous.4open.science/r/ConfSleepNet-F383.

Applications · Neuroscience, Cognitive Science

Shuqi Zhu, Yi Zhong, Ziyi Ye, Bangde Du, Yujia Zhou, Qingyao Ai, Yiqun LIU

While AI-generated hallucinations pose considerable risks, the underlying cognitive mechanisms by which humans can successfully recognize or be misled by these hallucinations remain unclear. To address this problem, this paper explores humans' neural dynamics to characterize how the brain processes hallucinated content. We record EEG signals from 27 participants while they are performing a verification task to judge the correctness of image descriptions generated by a multi-modal large language model (MLLM). Based on an averaged event-related potential (ERP) study, we reveal that multiple cognitive processes, e.g., semantic integration, inferential processing, memory retrieval, and cognitive load, exhibit distinct patterns when humans process hallucinated versus non-hallucinated content. Notably, neural responses to hallucinations that were misjudged versus correctly judged by human participants showed significant differences. This indicates that misjudged AI-generated hallucinations failed to trigger the standard neurocognitive fact verification pathway. The detailed code can be accessed openly through https://anonymous.4open.science/r/EEG-Hallucination-anonymous-F125.

Applications · Neuroscience, Cognitive Science

Wu S. Zihan, Ariane Delrocq, Wulfram Gerstner, Guillaume Bellec

While end-to-end self-supervised learning with backpropagation (global BP-SSL) has become central for training modern AI systems, theories of local self-supervised learning (local-SSL) have struggled to build functional representations in deep neural networks. To establish a link between global and local rules, we first develop a theory for deep linear networks: We identify conditions for local-SSL algorithms (like Forward-forward or CLAPP) to implement exactly the same weight update as a global BP-SSL. Starting from the theoretical insights, we then develop novel variants of local-SSL algorithms to approximate global BP-SSL in deep non-linear convolutional neural networks. Variants that improve the similarity between updates of local-SSL with those of global BP-SSL also show better performance on image datasets (CIFAR-10, STL-10, and Tiny ImageNet). The best local-SSL rule with the CLAPP loss function matches the performance of a comparable global BP-SSL with InfoNCE or CPC-like loss functions, and improves upon state-of-the-art for layer-wise SSL on these benchmarks.

Applications · Neuroscience, Cognitive Science

Sicheng Shen, Mingyang Lv, Bing Han, Dongcheng Zhao, Guobin Shen, Feifei Zhao, Yi Zeng

In recent years, Spiking Neural Networks (SNNs) have achieved remarkable progress, with Spiking Transformers emerging as a promising architecture for energy-efficient sequence modeling. However, existing Spiking Transformers still lack a principled mechanism for effective temporal fusion, limiting their ability to fully exploit spatiotemporal dependencies. Inspired by feedforward–feedback modulation in the human visual pathway, we propose **TEFormer**, the first Spiking Transformer framework that achieves bidirectional temporal fusion by decoupling temporal modeling across its core components. Specifically, TEFormer employs a lightweight and hyperparameter-free **forward temporal fusion mechanism in the attention module**, enabling fully parallel computation, while incorporating a **backward gated recurrent structure in the MLP** to aggregate temporal information in reverse order and reinforce temporal consistency. Extensive experiments across a wide range of benchmarks demonstrate that TEFormer consistently and significantly outperforms strong SNN and Spiking Transformer baselines under diverse datasets. Moreover, through the first systematic evaluation of Spiking Transformers under different neural encoding schemes, we show that the performance gains of TEFormer remain stable across encoding choices, indicating that the improved temporal modeling directly translates into reliable accuracy improvements across varied spiking representations. These results collectively establish TEFormer as an effective and general framework for temporal modeling in Spiking Transformers. Code: [https://anonymous.4open.science/r/TEFormer-6EB7](https://anonymous.4open.science/r/TEFormer-6EB7)

Applications · Neuroscience, Cognitive Science

Yujin Potter, Seun Eisape, Shiyang Lai, Alexander Huth, James Evans, Been Kim, Jacob Eisenstein, Dawn Song, Alane Suhr

Researchers have shown that neural similarity among humans predicts social closeness and cooperative success, whereas innovation often emerges from interactions among dissimilar individuals. We investigate whether these principles extend to artificial intelligence by examining interactions between large language models. In our experiments, 276 model pairs interact across eight games spanning both cooperation and novelty. We find that pairs with more similar representation spaces achieve significantly higher cooperation but exhibit reduced novelty and creativity. The effects of representational similarity on cooperation and novelty remain robust even after isolating other factors such as performance disparity and model size. We also find that similarity in the early layers consistently exhibits the strongest effect across games, compared to the middle and later layers. This suggests that a central factor underlying the observed trend is the extent to which the two models share lexical and semantic grounding. These findings suggest that representational similarity can be an important consideration in multi-agent system design.

Applications · Neuroscience, Cognitive Science

Raymond Khazoum, Daniela Fernandes, Aleksandr Krylov, Qin Li, Stephane Deny

Mental rotation—the ability to compare objects seen from different viewpoints—is a fundamental example of mental simulation and spatial world modeling in humans. Here we propose a mechanistic model of human mental rotation, leveraging recent advances in deep, equivariant, and neuro-symbolic learning. Our model consists of three stacked components: (1) an equivariant neural encoder, producing 3D spatial representations of objects from images, (2) a neuro-symbolic object encoder, deriving symbolic objects descriptions from these spatial representations, and (3) a neural decision agent, comparing these symbolic descriptions to prescribe rotation simulations in 3D latent space via a recurrent pathway. Our model design is guided by the abundant experimental literature on mental rotation, which we complemented with experiments in VR where participants could at times manipulate the objects to compare. Our model captures well the performance, response times and behavior of participants in our and others' experiments, and through ablation studies we demonstrate the necessity of each component. Our work adds to a recent collection of deep neural models of human spatial reasoning, further demonstrating the potency of integrating deep, equivariant, and symbolic representations to model the human mind.