We present Habitat 3.0: a simulation platform for studying collaborative human-robot tasks in home environments. Habitat 3.0 offers contributions across three dimensions: (1) Accurate humanoid simulation: addressing challenges in modeling complex deformable bodies and diversity in appearance and motion, all while ensuring high simulation speed. (2) Human-in-the-loop infrastructure: enabling real human interaction with simulated robots via mouse/keyboard or a VR interface, facilitating evaluation of robot policies with human input. (3) Collaborative tasks: studying two collaborative tasks, Social Navigation and Social Rearrangement. Social Navigation investigates a robot's ability to locate and follow humanoid avatars in unseen environments, whereas Social Rearrangement addresses collaboration between a humanoid and robot while rearranging a scene. These contributions allow us to study end-to-end learned and heuristic baselines for human-robot collaboration in-depth, as well as evaluate them with humans in the loop. Our experiments demonstrate that learned robot policies lead to efficient task completion when collaborating with unseen humanoid agents and human partners that might exhibit behaviors that the robot has not seen before. Additionally, we observe emergent behaviors during collaborative task execution, such as the robot yielding space when obstructing a humanoid agent, thereby allowing the effective completion of the task by the humanoid agent. Furthermore, our experiments using the human-in-the-loop tool demonstrate that our automated evaluation with humanoids can provide an indication of the relative ordering of different policies when evaluated with real human collaborators. Habitat 3.0 unlocks interesting new features in simulators for Embodied AI, and we hope it paves the way for a new frontier of embodied human-AI interaction capabilities. For more details and visualizations, visit: https://aihabitat.org/habitat3.
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Theory · Deep Learning
The behavior of neural networks still remains opaque, and a recently widely noted phenomenon is that networks often achieve similar performance when initialized with different random parameters. This phenomenon has attracted significant attention in measuring the similarity between features learned by distinct networks. However, feature similarity could be vague in describing the same feature since equivalent features hardly exist. In this paper, we expand the concept of equivalent feature and provide the definition of what we call *functionally equivalent features*. These features produce equivalent output under certain transformations. Using this definition, we aim to derive a more intrinsic metric for the so-called *feature complexity* regarding the redundancy of features learned by a neural network at each layer. We offer a formal interpretation of our approach through the lens of category theory, a well-developed area in mathematics. To quantify the feature complexity, we further propose an efficient algorithm named Iterative Feature Merging. Our experimental results validate our ideas and theories from various perspectives. We empirically demonstrate that the functionally equivalence widely exists among different features learned by the same neural network and we could reduce the number of parameters of the network without affecting the performance. We have also drawn several interesting empirical findings, including: 1) the larger the network, the more redundant features it learns; 2) in particular, we show how to prune the networks based on our finding using direct equivalent feature merging, without fine-tuning which is often needed in peer network pruning methods; 3) same structured networks with higher feature complexity achieve better performance; 4) through the layers of a neural network, the feature complexity first increase then decrease; 5) for the image classification task, a group of functionally equivalent features may correspond to a specific semantic meaning. Source code will be made publicly available.
Protein complex formation, a pivotal challenge in contemporary biology, has recently gained interest from the machine learning community, particularly concerning protein-ligand docking tasks. In this paper, we delve into the equally crucial but comparatively under-investigated domain of protein-protein docking. Specifically, we propose a geometric deep learning framework, termed EBMDock, which employs statistical potential as its energy function. This approach produces a probability distribution over docking poses, such that the identified docking pose aligns with a minimum point in the energy landscape. We employ a differential algorithm grounded in Langevin dynamics to efficiently sample from the docking pose distribution. Additionally, we incorporate energy-based training using contrastive divergence, enhancing both performance and stability. Empirical results demonstrate that our approach achieves superior performance on two benchmark datasets DIPS and DB5.5. Furthermore, the results suggest EBMDock can serve as an orthogonal enhancement to existing methods.
Probabilistic Methods · Structure Learning
We deal with the combinatorial problem of learning directed acyclic graph (DAG) structure from observational data adhering to a linear structural equation model (SEM). Leveraging advances in differentiable, nonconvex characterizations of acyclicity, recent efforts have advocated a continuous constrained optimization paradigm to efficiently explore the space of DAGs. Most existing methods employ lasso-type score functions to guide this search, which (i) require expensive penalty parameter retuning when the $\textit{unknown}$ SEM noise variances change across problem instances; and (ii) implicitly rely on limiting homoscedasticity assumptions. In this work, we propose a new convex score function for sparsity-aware learning of linear DAGs, which incorporates concomitant estimation of scale and thus effectively decouples the sparsity parameter from noise levels. Regularization via a smooth, nonconvex acyclicity penalty term yields CoLiDE ($\textbf{Co}$ncomitant $\textbf{Li}$near $\textbf{D}$AG $\textbf{E}$stimation), a regression-based criterion amenable to efficient gradient computation and closed-form estimation of exogenous noise levels in heteroscedastic scenarios. Our algorithm outperforms state-of-the-art methods without incurring added complexity, especially when the DAGs are larger and the noise level profile is heterogeneous. We also find CoLiDE exhibits enhanced stability manifested via reduced standard deviations in several domain-specific metrics, underscoring the robustness of our novel linear DAG estimator.
Miscellaneous Aspects of Machine Learning · Representation Learning
This paper introduces Least Volume---a simple yet effective regularization inspired by geometric intuition---that can reduce the necessary number of latent dimensions needed by an autoencoder without requiring any prior knowledge of the intrinsic dimensionality of the dataset. We show that the Lipschitz continuity of the decoder is the key to making it work, provide a proof that PCA is just a linear special case of it, and reveal that it has a similar PCA-like importance ordering effect when applied to nonlinear models. We demonstrate the intuition behind the regularization on some pedagogical toy problems, and its effectiveness on several benchmark problems, including MNIST, CIFAR-10 and CelebA.
Applications · Computer Vision
This work studies the problem of panoptic symbol spotting, which is to spot and parse both countable object instances (windows, doors, tables, etc.) and uncountable stuff (wall, railing, etc.) from computer-aided design (CAD) drawings. Existing methods typically involve either rasterizing the vector graphics into images and using image-based methods for symbol spotting, or directly building graphs and using graph neural networks for symbol recognition. In this paper, we take a different approach, which treats graphic primitives as a set of 2D points that are locally connected and use point cloud segmentation methods to tackle it. Specifically, we utilize a point transformer to extract the primitive features and append a mask2former-like spotting head to predict the final output. To better use the local connection information of primitives and enhance their discriminability, we further propose the attention with connection module (ACM) and contrastive connection learning scheme (CCL). Finally, we propose a KNN interpolation mechanism for the mask attention module of the spotting head to better handle primitive mask downsampling, which is primitive-level in contrast to pixel-level for the image. Our approach, named SymPoint, is simple yet effective, outperforming recent state-of-the-art method GAT-CADNet by an absolute increase of 9.6% PQ and 10.4% RQ on the FloorPlanCAD dataset. The source code and models will be available at \url{https://github.com/nicehuster/SymPoint}.
Applications · Chemistry and Drug Discovery
Understanding the 3D structures of protein multimers is crucial, as they play a vital role in regulating various cellular processes. It has been empirically confirmed that the multimer structure prediction (MSP) can be well handled in a step-wise assembly fashion using provided dimer structures and predicted protein-protein interactions (PPIs). However, due to the biological gap in the formation of dimers and larger multimers, directly applying PPI prediction techniques can often cause a poor generalization to the MSP task. To address this challenge, we aim to extend the PPI knowledge to multimers of different scales (i.e., chain numbers). Specifically, we propose PromptMSP, a pre-training and Prompt tuning framework for Multimer Structure Prediction. First, we tailor the source and target tasks for effective PPI knowledge learning and efficient inference, respectively. We design PPI-inspired prompt learning to narrow the gaps of two task formats and generalize the PPI knowledge to multimers of different scales. We provide a meta-learning strategy to learn a reliable initialization of the prompt model, enabling our prompting framework to effectively adapt to limited data for large-scale multimers. Empirically, we achieve both significant accuracy (RMSD and TM-Score) and efficiency improvements compared to advanced MSP models.
Deep Learning · Generative Models and Autoencoders
Classifier-free guidance (CFG) is a pivotal technique for balancing the diversity and fidelity of samples in conditional diffusion models. This approach involves utilizing a single model to jointly optimize the conditional score predictor and unconditional score predictor, eliminating the need for additional classifiers. It delivers impressive results and can be employed for continuous and discrete condition representations. However, when the condition is continuous, it prompts the question of whether the trade-off can be further enhanced. Our proposed inner classifier-free guidance (ICFG) provides an alternative perspective on the CFG method when the condition has a specific structure, demonstrating that CFG represents a first-order case of ICFG. Additionally, we offer a second-order implementation, highlighting that even without altering the training policy, our second-order approach can introduce new valuable information and achieve an improved balance between fidelity and diversity for Stable Diffusion.
Reinforcement Learning · Everything Else
The general sequential decision-making problem, which includes Markov decision processes (MDPs) and partially observable MDPs (POMDPs) as special cases, aims at maximizing a cumulative reward by making a sequence of decisions based on a history of observations and actions over time. Recent studies have shown that the sequential decision-making problem is statistically learnable if it admits a low-rank structure modeled by predictive state representations (PSRs). Despite these advancements, existing approaches typically involve oracles or steps that are computationally intractable. On the other hand, the upper confidence bound (UCB) based approaches, which have served successfully as computationally efficient methods in bandits and MDPs, have not been investigated for more general PSRs, due to the difficulty of optimistic bonus design in these more challenging settings. This paper proposes the first known UCB-type approach for PSRs, featuring a novel bonus term that upper bounds the total variation distance between the estimated and true models. We further characterize the sample complexity bounds for our designed UCB-type algorithms for both online and offline PSRs. In contrast to existing approaches for PSRs, our UCB-type algorithms enjoy computational tractability, last-iterate guaranteed near-optimal policy, and guaranteed model accuracy.
Theory · Deep Learning
Residual neural networks are state-of-the-art deep learning models. Their continuous-depth analog, neural ordinary differential equations (ODEs), are also widely used. Despite their success, the link between the discrete and continuous models still lacks a solid mathematical foundation. In this article, we take a step in this direction by establishing an implicit regularization of deep residual networks towards neural ODEs, for nonlinear networks trained with gradient flow. We prove that if the network is initialized as a discretization of a neural ODE, then such a discretization holds throughout training. Our results are valid for a finite training time, and also as the training time tends to infinity provided that the network satisfies a Polyak-Łojasiewicz condition. Importantly, this condition holds for a family of residual networks where the residuals are two-layer perceptrons with an overparameterization in width that is only linear, and implies the convergence of gradient flow to a global minimum. Numerical experiments illustrate our results.
Miscellaneous Aspects of Machine Learning · Causality
Current approaches to Video Question Answering (VideoQA) primarily focus on cross-modality matching, which is limited by the requirement for extensive data annotations and the insufficient capacity for causal reasoning (e.g. attributing accidents). To address these challenges, we introduce a causal framework for video reasoning, termed Learning Latent Causal Processes (LLCP). At the heart of LLCP lies a multivariate generative model designed to analyze the spatial-temporal dynamics of objects within events. Leveraging the inherent modularity of causal mechanisms, we train the model through self-supervised local auto-regression eliminating the need for annotated question-answer pairs. During inference, the model is applied to answer two types of reasoning questions: accident attribution, which infers the cause from observed effects, and counterfactual prediction, which predicts the effects of counterfactual conditions given the factual evidence. In the first scenario, we identify variables that deviate from the established distribution by the learned model, signifying the root cause of accidents. In the second scenario, we replace embeddings of previous variables with counterfactual ones, enabling us to forecast potential developments. Once we have identified these cause/effect variables, natural language answers are derived through a combination of grammatical parsing and a pre-trained vision-language model. We assess the efficacy of LLCP on both synthetic and real-world data, demonstrating comparable performance to supervised methods despite our framework using no paired textual annotations.
Deep Learning · Large Language Models
Pretrained large language models (LLMs) are general purpose problem solvers applicable to a diverse set of tasks with prompts. They can be further improved towards a specific task by fine-tuning on a specialized dataset. However, fine-tuning usually makes the model narrowly specialized on this dataset with reduced general in-context learning performances, which is undesirable whenever the fine-tuned model needs to handle additional tasks where no fine-tuning data is available. In this work, we first demonstrate that fine-tuning on a single task indeed decreases LLMs' general in-context learning performance. We discover one important cause of such forgetting, format specialization, where the model overfits to the format of the fine-tuned task.We further show that format specialization happens at the very beginning of fine-tuning. To solve this problem, we propose Prompt Tuning with MOdel Tuning (ProMoT), a simple yet effective two-stage fine-tuning framework that reduces format specialization and improves generalization.ProMoT offloads task-specific format learning into additional and removable parameters by first doing prompt tuning and then fine-tuning the model itself with this soft prompt attached. With experiments on several fine-tuning tasks and 8 in-context evaluation tasks, we show that ProMoT achieves comparable performance on fine-tuned tasks to standard fine-tuning, but with much less loss of in-context learning performances across a board range of out-of-domain evaluation tasks. More importantly, ProMoT can even enhance generalization on in-context learning tasks that are semantically related to the fine-tuned task, e.g. ProMoT on En-Fr translation significantly improves performance on other language pairs, and ProMoT on NLI improves performance on summarization.Experiments also show that ProMoT can improve the generalization performance of multi-task training.
Deep Learning · Generative Models and Autoencoders
Optimal Transport (OT) problem aims to find a transport plan that bridges two distributions while minimizing a given cost function. OT theory has been widely utilized in generative modeling. In the beginning, OT distance has been used as a measure for assessing the distance between data and generated distributions. Recently, OT transport map between data and prior distributions has been utilized as a generative model. These OT-based generative models share a similar adversarial training objective. In this paper, we begin by unifying these OT-based adversarial methods within a single framework. Then, we elucidate the role of each component in training dynamics through a comprehensive analysis of this unified framework. Moreover, we suggest a simple but novel method that improves the previously best-performing OT-based model. Intuitively, our approach conducts a gradual refinement of the generated distribution, progressively aligning it with the data distribution. Our approach achieves a FID score of 2.51 on CIFAR-10 and 5.99 on CelebA-HQ-256, outperforming unified OT-based adversarial approaches.
Deep Learning · Theory
Mixup is a data augmentation strategy that employs convex combinations of training instances and their respective labels to improve the robustness and calibration of deep neural networks. Despite its widespread adoption, the nuanced mechanisms that underpin its success are not entirely understood. The observed phenomenon of Neural Collapse, where the last-layer activations and classifier of deep networks converge to a simplex equiangular tight frame (ETF), provides a compelling motivation to explore whether mixup induces alternative geometric configurations and whether those could explain its success. In this study, we delve into the last-layer activations of training data for deep networks subjected to mixup, aiming to uncover insights into its operational efficacy. Our investigation, spanning various architectures and dataset pairs, reveals that mixup's last-layer activations predominantly converge to a distinctive configuration different than one might expect. In this configuration, activations from mixed-up examples of identical classes align with the classifier, while those from different classes delineate channels along the decision boundary. These findings are unexpected, as mixed-up features are not simple convex combinations of feature class means (as one might get, for example, by training mixup with the mean squared error loss). By analyzing this distinctive geometric configuration, we elucidate the mechanisms by which mixup enhances model calibration. To further validate our empirical observations, we conduct a theoretical analysis under the assumption of an unconstrained features model, utilizing the mixup loss. Through this, we characterize and derive the optimal last-layer features under the assumption that the classifier forms a simplex ETF.
Deep Learning · Large Language Models
While large language models (LLMs) equipped with techniques like chain-of-thought prompting have demonstrated impressive capabilities, they still fall short in their ability to reason robustly in complex settings. However, evaluating LLM reasoning is challenging because system capabilities continue to grow while benchmark datasets for tasks like logical deduction have remained static. We introduce MuSR, a dataset for evaluating language models on multistep soft reasoning tasks specified in a natural language narrative. This dataset has two crucial features. First, it is created through a novel neurosymbolic synthetic-to-natural generation algorithm, enabling the construction of complex reasoning instances that challenge GPT-4 (e.g., murder mysteries roughly 1000 words in length) and which can be scaled further as more capable LLMs are released. Second, our data instances are free text narratives corresponding to real-world domains of reasoning; this makes it simultaneously much more challenging than other synthetically-crafted benchmarks while remaining realistic and tractable for human annotators to solve with high accuracy. We evaluate a range of LLMs and prompting techniques on this dataset and characterize the gaps that remain for techniques like chain-of-thought to perform robust reasoning.
Deep Learning · Large Language Models
Recent studies have successfully shown that large language models (LLMs) can be successfully used for generative error correction (GER) on top of the automatic speech recognition (ASR) output. Specifically, an LLM is utilized to carry out a direct mapping from the N-best hypotheses list generated by an ASR system to the predicted output transcription. However, despite its effectiveness, GER introduces extra data uncertainty since the LLM is trained without taking into account acoustic information available in the speech signal. In this work, we aim to overcome such a limitation by infusing acoustic information before generating the predicted transcription through a novel late fusion solution termed Uncertainty-Aware Dynamic Fusion (UADF). UADF is a multimodal fusion approach implemented into an auto-regressive decoding process and works in two stages: (i) It first analyzes and calibrates the token-level LLM decision, and (ii) it then dynamically assimilates the information from the acoustic modality. Experimental evidence collected from various ASR tasks shows that UADF surpasses existing fusion mechanisms in several ways. It yields significant improvements in word error rate (WER) while mitigating data uncertainty issues in LLM and addressing the poor generalization relied with sole modality during fusion. We also demonstrate that UADF seamlessly adapts to audio-visual speech recognition.
Deep Learning · Large Language Models
Multi-modal language models (LM) have recently shown promising performance in high-level reasoning tasks on videos. However, existing methods still fall short in tasks like causal or compositional spatiotemporal reasoning over actions, in which model predictions need to be grounded in fine-grained low-level details, such as object motions and object interactions.In this work, we propose training an LM end-to-end on low-level surrogate tasks, including object detection, re-identification, and tracking, to endow the model with the required low-level visual capabilities. We show that a two-stream video encoder with spatiotemporal attention is effective at capturing the required static and motion-based cues in the video. By leveraging the LM's ability to perform the low-level surrogate tasks, we can cast reasoning in videos as the three-step process of *Look, Remember, Reason*, wherein visual information is extracted using low-level visual skills step-by-step and then integrated to arrive at a final answer. We demonstrate the effectiveness of our framework on diverse visual reasoning tasks from the ACRE, CATER, Something-Else and STAR datasets. Our approach is trainable end-to-end and surpasses state-of-the-art task-specific methods across these tasks by a large margin.
Reinforcement Learning · Multi-agent
Federated reinforcement learning (FRL) has emerged as a promising paradigm for reducing the sample complexity of reinforcement learning tasks by exploiting information from different agents. However, when each agent interacts with a potentially different environment, little to nothing is known theoretically about the non-asymptotic performance of FRL algorithms. The lack of such results can be attributed to various technical challenges and their intricate interplay: Markovian sampling, linear function approximation, multiple local updates to save communication, heterogeneity in the reward functions and transition kernels of the agents' MDPs, and continuous state-action spaces. Moreover, in the on-policy setting, the behavior policies vary with time, further complicating the analysis. In response, we introduce FedSARSA, a novel federated on-policy reinforcement learning scheme, equipped with linear function approximation, to address these challenges and provide a comprehensive finite-time error analysis. Notably, we establish that FedSARSA converges to a policy that is near-optimal for all agents, with the extent of near-optimality proportional to the level of heterogeneity. Furthermore, we prove that FedSARSA leverages agent collaboration to enable linear speedups as the number of agents increases, which holds for both fixed and adaptive step-size configurations.
Applications · Health
The rising rates of diabetes necessitate innovative methods for its management. Continuous glucose monitors (CGM) are small medical devices that measure blood glucose levels at regular intervals providing insights into daily patterns of glucose variation. Forecasting of glucose trajectories based on CGM data holds the potential to substantially improve diabetes management, by both refining artificial pancreas systems and enabling individuals to make adjustments based on predictions to maintain optimal glycemic range. Despite numerous methods proposed for CGM-based glucose trajectory prediction, these methods are typically evaluated on small, private datasets, impeding reproducibility, further research, and practical adoption. The absence of standardized prediction tasks and systematic comparisons between methods has led to uncoordinated research efforts, obstructing the identification of optimal tools for tackling specific challenges. As a result, only a limited number of prediction methods have been implemented in clinical practice. To address these challenges, we present a comprehensive resource that provides (1) a consolidated repository of curated publicly available CGM datasets to foster reproducibility and accessibility; (2) a standardized task list to unify research objectives and facilitate coordinated efforts; (3) a set of benchmark models with established baseline performance, enabling the research community to objectively gauge new methods' efficacy; and (4) a detailed analysis of performance-influencing factors for model development. We anticipate these resources to propel collaborative research endeavors in the critical domain of CGM-based glucose predictions. Our code is available online at github.com/IrinaStatsLab/GlucoBench.
Deep Learning · Generative Models and Autoencoders
This paper considers a ubiquitous problem underlying several applications of DPMs, i.e., optimizing the parameters of DPMs when the objective is a differentiable metric defined on the generated contents. Since the sampling procedure of DPMs involves recursive calls to the denoising UNet, naive gradient backpropagation requires storing the intermediate states of all iterations, resulting in extremely high memory consumption. To overcome this issue, we propose a novel method AdjointDPM, which first generates new samples from diffusion models by solving the corresponding probability-flow ODEs. It then uses the adjoint sensitivity method to backpropagate the gradients of the loss to the models' parameters (including conditioning signals, network weights, and initial noises) by solving another augmented ODE. To reduce numerical errors in both the forward generation and gradient backpropagation processes, we further reparameterize the probability-flow ODE and augmented ODE as simple non-stiff ODEs using exponential integration. AdjointDPM can effectively compute the gradients of all types of parameters in DPMs, including the network weights, conditioning text prompts, and noisy states.Finally, we demonstrate the effectiveness of AdjointDPM on several interesting tasks: guided generation via modifying sampling trajectories, finetuning DPM weights for stylization, and converting visual effects into text embeddings.