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Optimization · Zero-order and Black-box Optimization

Mingyue Qin, Shuyu Yin, Qinghai Guo, Xiaolin Huang, Peilin Liu, Fei Wen

The human brain is a biologically instantiated on-device neural system that integrates both learning and inference in a unified architecture, which enables rapid and flexible learning on-the-fly. This extraordinary capability is achieved through non-BP learning mechanisms, whereas BP is computationally and memory intensive that unsuitable for on-chip edge learning. Zeroth-order (ZO) optimization methods, which resemble biologically plausible perturbation-based learning, offer a promising alternative that enables learning with only forward passes and hence can significantly reduce the complexity of on-chip hardware implementation. However, in this work we show that applying ZO methods to spiking neural networks (SNNs) is non-trivial due to the step-function nature of spiking activation. We analyze the challenges posed by the spiking activation, and reveal a variance amplification effect of it. Based on this insight, we propose a subspace-based ZO (SZO) method that leverages the intrinsic low-dimensional structure of the SNN optimization trajectory. By learning in a low-dimensional subspace, SZO substantially enhances ZO learning efficacy, achieving accuracy comparable to first-order (FO) methods with faster learning speed than full-space BP. We evaluate SZO on model training from scratch, continual training, and unsupervised adaptation. Experimental results demonstrate that SZO closely approaches FO training performance for the first time while offering fast learning speed.

Applications · Computer Vision

Jue Gong, Zihan Zhou, Jingkai Wang, Xiaohong Liu, Yulun Zhang, Xiaokang Yang

Face fill-light enhancement (FFE) brightens underexposed faces by adding virtual fill light while keeping the original scene illumination and background unchanged. Most face relighting methods aim to reshape overall lighting, which can suppress the input illumination or modify the entire scene, leading to foreground–background inconsistency and mismatching practical FFE needs. To support scalable learning, we introduce LightYourFace-160K (LYF-160K), a large-scale paired dataset built with a physically consistent renderer that injects a disk-shaped area fill light controlled by six disentangled factors, producing 160K before-and-after pairs. We first pretrain a physics-aware lighting prompt (PALP) that embeds the 6D parameters into diffusion-compatible conditioning tokens, using an auxiliary planar-light reconstruction objective. Building on a pretrained diffusion backbone, we then train FiLitDiff, an efficient one-step model conditioned on these physically grounded lighting codes, enabling fast, controllable, and high-fidelity fill lighting at low computational cost. Experiments on held-out paired sets demonstrate strong perceptual quality and competitive full-reference metrics, while better preserving background illumination. The dataset and model will be released.

General Machine Learning · Causality

Alek Fröhlich, Vladimir Kostic, Karim Lounici, Daniel Rodrigues Perazzo, Daniel Tiezzi, Massimiliano Pontil

Conditional independence (CI) is central to causal inference, feature selection, and graphical modeling, yet it is untestable in many settings without additional assumptions. Existing CI tests often rely on restrictive structural conditions, limiting their validity. Kernel methods using partial covariance operators offer a more principled approach but suffer from limited adaptivity, slow convergence, and poor scalability. In this work, we explore whether representation learning can help address these limitations. Specifically, we focus on representations derived from the singular value decomposition of partial covariance operators and use them to construct a simple test statistic. We also introduce a bi-level contrastive algorithm to learn these representations. Our theory links representation learning error to test performance and establishes asymptotic validity and power guarantees. Experiments on real and synthetic data suggest that this approach offers a principled and statistically grounded path toward scalable CI testing, bridging kernel-based theory with modern representation learning.

Deep Learning · Large Language Models

Zhaohui Wang

Tool-augmented LLM agents can harbor implicit state that persists across sessions, activates through events, and propagates across agent boundaries—all invisible to standard debugging. We formalize this as Persistent Semantic Entities (PSEs): constructs defined by name binding, event triggering, and cross-boundary propagation. Experiments across twenty models from nine families (OpenAI, Anthropic, Google, Meta, Alibaba, DeepSeek, Mistral, Zhipu, Moonshot) spanning 1.5B to 1 trillion parameters reveal three findings. First, PSE susceptibility affects all tested architectures including Claude (88%) and Gemini (84–96%), with rates ranging 20–100%; even the largest model (1T parameters) shows 50% susceptibility. Second, contamination does not decay—it increases over conversation turns, as instruction-tuned models reinforce rather than forget injected state. Third, self-reflection provides inconsistent protection—from no effect to negative effect (contamination increases 14% on Claude-Sonnet-4)—while quarantine-based validation consistently achieves 57–85% reduction across models. We validate findings against documented production incidents. Our work establishes PSEs as a distinct phenomenon requiring architectural solutions beyond prompt engineering.

Deep Learning · Large Language Models

Zhuofan Shi, Ming Ma, ZekunYao, Fangkai Yang, Jue Zhang, Dongge Han, Victor Ruehle, Qingwei Lin, Saravan Rajmohan, Dongmei Zhang

Open-Ended Deep Research (OEDR) pushes LLM agents beyond short-form QA toward long-horizon workflows that iteratively search, connect, and synthesize evidence into structured reports. However, existing OEDR agents largely follow either linear "search-then-generate" accumulation or outline-centric planning. The former suffers from lost-in-the-middle failures as evidence grows, while the latter relies on the LLM to implicitly infer knowledge gaps from the outline alone, providing weak supervision for identifying missing relations and triggering targeted exploration. We present DualGraph memory, an architecture that separates what the agent knows from how it writes. DualGraph maintains two co-evolving graphs: an Outline Graph (OG), and a Knowledge Graph (KG), a semantic memory that stores fine-grained knowledge units, including core entities, concepts, and their relations. By analyzing the KG topology together with structural signals from the OG, DualGraph generates targeted search queries, enabling more efficient and comprehensive iterative knowledge-driven exploration and refinement. Across DeepResearch Bench, DeepResearchGym, and DeepConsult, DualGraph consistently outperforms state-of-the-art baselines in report depth, breadth, and factual grounding; for example, it reaches a 53.08 RACE score on DeepResearch Bench with GPT-5. Moreover, ablation studies confirm the central role of the dual-graph design. DualGraph code is available at https://anonymous.4open.science/r/DualGraph-2536.

Applications · Robotics

Yu Qi, Haibo Zhao, Ziyu Guo, Siyuan Ma, Ziyan Chen, Yaokun Han, Renrui Zhang, Zitiantao Lin, Yizhe Zhu, Shiji Xin 等

Understanding the capability bottlenecks of embodied multimodal large language models (MLLMs) is crucial for improvement. However, existing embodied benchmarks fail to provide actionable insights because they focus on task-level evaluation rather than discovering capability bottlenecks. To address this, we introduce BEAR, where we divide embodied tasks into 14 atomic skills for skill-level evaluation. BEAR comprises 4,469 interleaved image–video–text entries across 14 skills in 6 categories, ranging from low-level perception to high-level planning. We evaluate 20 MLLMs on BEAR under a hierarchical skill-level diagnosis framework and discover that (1) perceptual capabilities are major bottlenecks behind reasoning failures, and (2) models fail due to unstable spatiotemporal modeling which remain unexposed in previous benchmarks. Furthermore, building on these insights, we propose BEAR-Agent, a multimodal conversable agent that augments MLLMs with visual and spatial tools. It substantially enhances MLLMs’ performance across skills, yielding a relative improvement of 17.5% on GPT-5 on BEAR and outperform baselines by a large margin in both simulation and real-robot experiments across models.

Deep Learning · Large Language Models

Haoran Ye, Xuning He, Vincent Arak, Haonan Dong, Guojie Song

The operational efficacy of large language models relies heavily on their inference-time context. This has established Context Engineering (CE) as a formal discipline for optimizing these inputs. Current CE methods rely on manually crafted harnesses, such as rigid generation-reflection workflows and predefined context schemas. They impose structural biases and restrict context optimization to a narrow, intuition-bound design space. To address this, we introduce Meta Context Engineering (MCE), a bi-level framework that supersedes static CE heuristics by co-evolving CE skills and context artifacts. In MCE iterations, a meta-level agent refines engineering skills via agentic crossover, a deliberative search over the history of skills, their executions, and evaluations. A base-level agent executes these skills, learns from training rollouts, and optimizes context as flexible files and code. We evaluate MCE across five disparate domains under offline and online settings. MCE demonstrates consistent performance gains, achieving 5.6--53.8% relative improvement over state-of-the-art agentic CE methods (mean of 16.9%), while maintaining superior context adaptability, transferability, and efficiency in both context usage and training.

Zhengwu Yang, Xunchao Li, Ke Cheng, Kunlong Liu, jianfengyang, HaoshuangWang, Kaipeng Deng, Qingqing Dang, Yanlin Sha, Yanjun Ma 等

Autoregressive decoding of large language models is frequently memory-traffic bound, so ultra-low-bit weight-only PTQ helps only if dequantization avoids irregular codebook or LUT access in the inner loop. Under the GPU-friendly bitshift trellis, existing 2-bit trellis-coded quantization (TCQ) pipelines either reintroduce micro-LUTs or suffer overlap-amplified artifacts because incoherence improves global Gaussianity but does not guarantee overlap-local joint geometry. We introduce Proteus a strictly lookup-free TCQ framework whose computed generator MUL-BAL uses cheap integer mixing plus a per-layer affine Gaussianizer to produce overlap-robust, near-Gaussian code values with zero runtime table loads. Proteus instantiates each layer by selecting from a tiny, pre-vetted candidate pool and then applies lightweight channel compensation and optional few-shot distillation that tune only per-layer affine statistics while keeping packed indices and the bitshift-trellis decoder fixed. On Llama 2 (7B–70B) at 2-bit PTQ, Proteus improves perplexity and zero-shot accuracy over strong TCQ/PTQ baselines and reduces end-to-end decode bandwidth at comparable throughput (e.g., 740 vs. 1020 GB/s on 70B).

Deep Learning · Large Language Models

Jiayi Zhang, Simon Yu, Derek Chong, Anthony Sicilia, Michael Tomz, Christopher Manning, Weiyan Shi

Post-training alignment often reduces LLM diversity, leading to a phenomenon known as mode collapse. Unlike prior work that attributes this effect to algorithmic limitations, we identify a fundamental, pervasive data-level driver: typicality bias in preference data, whereby annotators systematically favor familiar text as a result of well-established findings in cognitive psychology. We formalize this bias theoretically, verify it empirically on preference datasets, and show that it plays a central role in mode collapse. Motivated by this analysis, we introduce Verbalized Sampling (VS), a simple, training-free prompting strategy to circumvent mode collapse. VS prompts the model to verbalize a probability distribution over a set of responses (e.g., "Generate 5 jokes about coffee and their corresponding probabilities"), which relieves the pressure to produce a single "typical" answer. Experiments show that VS significantly improves performance across creative writing (poems, stories, jokes), social dialogue simulation, synthetic data generation, and open-ended QA, without sacrificing safety and factual accuracy. For instance, in creative writing, VS increases diversity by 1.6-2.1x compared to direct prompting. We further observe an emergent trend that more capable models benefit more from VS. In sum, our work provides a new data-centric perspective on mode collapse and a practical inference-time remedy that helps unlock pre-trained generative diversity.

General Machine Learning · Causality

Dimitri Meunier, Jakub Wornbard, Vladimir Kostic, Antoine Moulin, Alek Fröhlich, Karim Lounici, Massimiliano Pontil, Arthur Gretton

We address the problem of causal effect estimation in the presence of hidden confounders using nonparametric instrumental variable (IV) regression. An established approach is to use estimators based on learned \emph{spectral features}, that is, features spanning the top singular subspaces of the operator linking treatments to instruments. While powerful, such features are agnostic to the outcome variable. Consequently, the method can fail when the true causal function is poorly represented by these dominant singular functions. To mitigate, we introduce Augmented Spectral Feature Learning, a framework that makes the feature learning process outcome-aware. Our method learns features by minimizing a novel contrastive loss derived from an augmented operator that incorporates information from the outcome. By learning these task-specific features, our approach remains effective even under spectral misalignment. We provide a theoretical analysis of this framework and validate our approach on challenging benchmarks.

Applications · Chemistry, Physics, and Earth Sciences

Martin Andrae, Erik Larsson, So Takao, Tomas Landelius, Fredrik Lindsten

Data assimilation (DA) is a cornerstone of scientific and engineering applications, combining model forecasts with sparse and noisy observations to estimate latent system states. Classical high-dimensional DA methods, such as the ensemble Kalman filter, rely on Gaussian approximations that are violated for complex dynamics or observation operators. To address this limitation, we introduce DAISI, a scalable filtering algorithm built on flow-based generative models that enables flexible probabilistic inference using data-driven priors. The core idea is to use a stationary, pre-trained generative prior that first incorporates forecast information through a novel *inverse-sampling step*, before assimilating observations via guidance-based conditional sampling. This allows us to leverage any forecasting model as part of the DA pipeline without having to retrain or fine-tune the generative prior at each assimilation step. Experiments on challenging nonlinear systems show that DAISI achieves accurate filtering results in regimes with sparse, noisy, and nonlinear observations where traditional methods struggle.

Applications · Health / Medicine

Zhenglun Kong, Mufan Qiu, John Boesen, xiang lin, Sukwon Yun, Tianlong Chen, Manolis Kellis, Marinka Zitnik

Understanding how cellular morphology, gene expression, and spatial context jointly shape tissue function is a central challenge in biology. Image-based spatial transcriptomics technologies now provide high-resolution measurements of cell images and gene expression profiles, but existing methods typically analyze these modalities in isolation or at limited resolution. We address the problem by introducing SPATIA, a multi-level generative and predictive model that learns unified, spatially aware representations by fusing morphology, gene expression, and spatial context from the cell to the tissue level. SPATIA also incorporates a novel spatially conditioned generative framework for predicting cell morphologies under perturbations. Specifically, we propose a confidence-aware flow matching objective that reweights weak optimal-transport pairs based on uncertainty. We further apply morphology-profile alignment to encourage biologically meaningful image generation, enabling the modeling of microenvironment-dependent phenotypic transitions. We assembled a multi-scale dataset consisting of 25.9 million cell-gene pairs across 17 tissues. We benchmark SPATIA against 18 models across 12 tasks, spanning categories such as phenotype generation, annotation, clustering, gene imputation, and cross-modal prediction. SPATIA achieves improved performance over state-of-the-art models, improving generative fidelity by 8\% and predictive accuracy by up to 3\%.

Social Aspects · Alignment

Itai Shapira, Gerdus Benade, Ariel Procaccia

Large language models often exhibit increased sycophantic behavior after preference-based post-training, showing a stronger tendency to affirm a user’s stated or implied belief even when this conflicts with factual accuracy or sound judgment. We present a formal analysis of how alignment from human feedback can increase this failure mode by identifying an explicit amplification mechanism that causally links optimization against a learned reward to bias in the human preference data used for alignment. We show that the direction of behavioral drift is determined by a covariance under the base policy between endorsing the belief signal in the prompt and the learned reward, and that the first-order effect reduces to a simple mean-gap condition. We then analyze reward learning from pairwise comparisons under random utility models like Bradley–Terry and characterize when bias in human annotators’ preferences induces this reward gap. Next, we propose a training-time intervention designed to neutralize the amplification mechanism itself. Among all post-trained policies that prevent sycophantic behavior from increasing, we characterize the unique policy closest in KL divergence to the unconstrained post-trained policy, and derive the corresponding minimal reward correction as a closed-form agreement penalty. Computational experiments find that reward gaps are common and cause behavioral drift in all the configurations considered.

Deep Learning · Large Language Models

Chi-Chih Chang, Wei-Cheng Lin, Chien-Yu Lin, Hung-Yueh Chiang, Yash Akhauri, Xilai Dai, Huiqiang Jiang, Yucheng Li, Kai-Chiang Wu, Luis Ceze 等

Long-context Large Language Models (LLMs) enable powerful applications but incur high memory costs due to the key–value states (KV-Cache). Recent studies attempt to share KV-Cache across layers, but these approaches either require expensive pretraining or rely on per-token cross-layer cosine similarity that is often limited in practice. We show, via Centered Kernel Alignment (CKA), that the dominant singular vectors of KV-Cache are well aligned across layers. Motivated by this observation, we propose xKV, a post-training compression method that jointly factorizes grouped-layer KV-Cache into a shared low-rank subspace, substantially reducing KV-Cache memory. Across widely used LLMs, xKV achieves up to 8× KV-Cache compression while preserving accuracy on long-context tasks and in multi-turn settings. To further improve efficiency, we introduce Selective Reconstruction (SR) at decode time. Combined with SR, xKV achieves up to 4.23× end-to-end speedup, surpassing notable baselines with 30% higher throughput under a similar accuracy level. Overall, xKV provides a plug-and-play approach to reduce both memory and latency for long-context LLM inference. Our code will be open-sourced.

Applications · Computer Vision

Zhihao He, Tieyuan Chen, Kangyu Wang, Ziran Qin, Yang Shao, Chaofan Gan, Shijie Li, Zuxuan Wu, Weiyao Lin

Current Video Large Language Models (Video LLMs) typically encode frames via a vision encoder and employ an autoregressive (AR) LLM for understanding and generation. However, this AR paradigm inevitably faces a dual efficiency bottleneck: strictly unidirectional attention compromises *understanding efficiency* by hindering global spatiotemporal aggregation, while serial decoding restricts *generation efficiency*. To address this, we propose **VidLaDA**, a Video LLM based on Diffusion Language Models (DLMs) that leverages bidirectional attention to unlock comprehensive spatiotemporal modeling and decode tokens in parallel. To further mitigate the computational overhead of diffusion decoding, we introduce **MARS-Cache**, an acceleration strategy that prunes redundancy by combining asynchronous visual cache refreshing with frame-wise chunk attention. Experiments show VidLaDA rivals state-of-the-art AR baselines (e.g., Qwen2.5-VL and LLaVA-Video) and outperforms DLM baselines, with MARS-Cache delivering over 12x speedup without compromising accuracy. *Code and checkpoints will be available in the camera-ready version.*

Jiarui Feng, Hanqing Zeng, Karish Grover, Ruizhong Qiu, Yinglong Xia, Qiang Zhang, Qifan Wang, Ren Chen, Dongqi Fu, Jiayi Liu 等

Mixture-of-Experts (MoE) models have become a leading approach for decoupling parameter count from computational cost in large language models. Despite significant progress, effectively scaling MoE performance remains a challenge. Previous work shows that the use of fine-grained experts enlarges the space of expert combinations and can improve flexibility, but it also imposes substantial routing overhead, creating a new scalability bottleneck. In this paper, we explore a complementary axis for scaling --- expert-output mixture. We first analyze the limitations of the standard weighted-summation aggregation in conventional MoE architectures. We then theoretically demonstrate that introducing structural aggregation both expands the expert-combination space without altering the experts or router configuration and enables possible multi-step reasoning within a single MoE layer. To this end, we propose DAG-MoE, a sparse MoE framework that employs a lightweight module to automatically learn the optimal aggregation structure among the selected experts. We evaluate DAG-MoE under standard language modeling settings. Extensive experiments show that DAG-MoE consistently improves performance in both pretraining and fine-tuning, surpassing traditional MoE baselines.

Deep Learning · Self-Supervised Learning

Karish Grover, Theodore Vasiloudis, Han Xie, Sixing Lu, Xiang song, Christos Faloutsos

Can multi-task self-supervised learning on graphs be coordinated without the usual tug-of-war between objectives? Graph self-supervised learning (SSL) offers a growing toolbox of pretext objectives—mutual information, reconstruction, contrastive learning—yet combining them reliably remains a challenge due to objective interference and training instability. Most multi-pretext pipelines use per-update mixing, forcing every parameter update to be a compromise, leading to three failure modes: Disagreement (conflict-induced negative transfer), Drift (nonstationary objective utility), and Drought (hidden starvation of underserved objectives). We argue that coordination is fundamentally a temporal allocation problem: deciding when each objective receives optimization budget, not merely how to weigh them. We introduce ControlG, a control-theoretic framework that recasts multi-objective graph SSL as feedback-controlled temporal allocation by estimating per-objective difficulty and pairwise antagonism, planning target budgets via a Pareto-aware log-hypervolume planner, and scheduling with a Proportional–Integral–Derivative (PID) controller. Across 9 datasets, ControlG consistently outperforms state-of-the-art baselines, while producing an auditable schedule that reveals which objectives drove learning.

Reinforcement Learning · Everything Else

Lorenzo Steccanella, Joshua B. Evans, Özgür Şimşek, Anders Jonsson

This paper presents a state representation framework for Markov decision processes (MDPs) that can be learned solely from state trajectories, requiring neither reward signals nor the actions executed by the agent. We propose learning the $\textit{minimum action distance}$ (MAD), defined as the minimum number of actions required to transition between states, as a fundamental metric that captures the underlying structure of an environment. MAD naturally enables critical downstream tasks such as goal-conditioned reinforcement learning and reward shaping by providing a dense, geometrically meaningful measure of progress. Our self-supervised learning approach constructs an embedding space where the distances between embedded state pairs correspond to their MAD, accommodating both symmetric and asymmetric approximations. We evaluate the framework on a comprehensive suite of environments with known MAD values, encompassing both deterministic and stochastic dynamics, as well as discrete and continuous state spaces, and environments with noisy observations. Empirical results demonstrate that the proposed approach not only efficiently learns accurate MAD representations across these diverse settings but also significantly outperforms existing state representation methods in terms of representation quality.

Optimization · Everything Else

Hang Lin, Yuanpeng Gao, Yuzhi Zhang, Kun Yuan, Gang Yan, Siheng Chen, Linfeng Zhang, Weinan E

Optimization problems are fundamental across science and industry, including planning, scheduling, and resource allocation. While LLMs show promise in automating optimization, they struggle to bridge the gap between real-world requirements and both mathematical formulations and effective heuristic designs. Furthermore, the field lacks a unified framework that spans problem formulation and heuristic discovery for NP-hard settings. To address these challenges, we propose OptMaster, a unified framework that spans optimization from formulation to heuristic discovery, structuring the process as a Directed Acyclic Graph (DAG) where each node represents a candidate solution. The DAG architecture enables cross-branch knowledge transfer when search progress stagnates. Within each node, we further replace textual self-reflection with independently generated verification code, grounding the evaluation in deterministic computation to suppress hallucinations. OptMaster achieves competitive performance across two optimization paradigms. In Formulation Intelligence, OptMaster achieves state-of-the-art accuracy across the three most challenging benchmarks in the field. In Heuristic Discovery, OptMaster surpasses the best known solutions on Circle Packing ($n=26, 32$) and achieves a cut of 9,590 on Gset70 with significantly reduced time and search budgets.

General Machine Learning · Hardware and Software

Kaihua Liang, Xin Tan, An Zhong, Hong Xu, Marco Canini

Diffusion Large Language Models (**DLLMs**) offer a compelling alternative to Auto-Regressive models, but their deployment is constrained by high decoding cost. In this work, we identify a key inefficiency in DLLM decoding: while computation is parallelized over token blocks, only a small subset of tokens is decodable at each diffusion step, causing most compute to be wasted on non-decodable tokens. We further observe a strong correlation between attention-derived token importance and token-wise decoding probability. Based on this insight, we propose **FOCUS**—an inference system designed for DLLMs. By dynamically *focusing* computation on decodable tokens and evicting non-decodable ones on-the-fly, FOCUS increases the effective batch size, alleviating compute limitations and enabling scalable throughput. Empirical evaluations demonstrate that FOCUS achieves up to **3.52× throughput** improvement over the production-grade engine LMDeploy, while preserving or improving generation quality across multiple benchmarks.