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Deep Learning · Robustness

Wenwen He, Wenke Huang, Bin Yang, ShuKan Liu, Mang Ye

Federated Learning (FL) enables collaborative training with privacy preservation but is vulnerable to backdoor attacks, where malicious clients degrade model performance on targeted inputs. These attacks exploit FL decentralized nature, while existing defenses, based on isolated behaviors and fixed rules, can be bypassed by adaptive attackers. To address these limitations, we propose **SPMC**, a marginal collaboration defense mechanism that leverages intrinsic consistency across clients to estimate inter-client marginal contributions. This allows the system to dynamically reduce the influence of clients whose behavior deviates from the collaborative norm, thus maintaining robustness even as the number of attackers changes. In addition to overcoming proxy-dependent purification's weaknesses, we introduce a self-purification process that locally adjusts suspicious gradients. By aligning them with margin-based model updates, we mitigate the effect of local poisoning. Together, these two modules significantly improve the adaptability and resilience of FL systems, both at the client and server levels. Experimental results on a variety of classification benchmarks demonstrate that SPMC achieves strong defense performance against sophisticated backdoor attacks without sacrificing accuracy on benign tasks. The code is posted at: https://github.com/WenddHe0119/SPMC.

Deep Learning · Foundation Models

Bingyi Kang, Yang Yue, Rui Lu, Zhijie Lin, Yang Zhao, Kaixin Wang, Gao Huang, Jiashi Feng

Scaling video generation models is believed to be promising in building world models that adhere to fundamental physical laws. However, whether these models can discover physical laws purely from vision can be questioned. A world model learning the true law should give predictions robust to nuances and correctly extrapolate on unseen scenarios.In this work, we evaluate across three key scenarios: in-distribution, out-of-distribution, and combinatorial generalization.We developed a 2D simulation testbed for object movement and collisions to generate videos deterministically governed by one or more classical mechanics laws.We focus on the scaling behavior of trainingdiffusion-based video generation models to predict object movements based on initial frames.Our scaling experiments show perfect generalization within the distribution, measurable scaling behavior for combinatorial generalization, but failure in out-of-distribution scenarios.Further experiments reveal two key insights about the generalization mechanisms of these models: (1) the models fail to abstract general physical rules and instead exhibit "case-based" generalization behavior, i.e., mimicking the closest training example; (2) when generalizing to new cases, models are observed to prioritize different factors when referencing training data: color $>$ size $>$ velocity $>$ shape.Our study suggests that scaling alone is insufficient for video generation models to uncover fundamental physical laws.

Deep Learning · Everything Else

Deepak Ravikumar, Efstathia Soufleri, Abolfazl Hashemi, Kaushik Roy

Deep learning has become the de facto approach in nearly all learning tasks. It has been observed that deep models tend to memorize and sometimes overfit data, which can lead to compromises in performance, privacy, and other critical metrics.In this paper, we explore the theoretical foundations that connect memorization to sample loss, focusing on learning dynamics to understand what and how deep models memorize. To this end, we introduce a novel proxy for memorization: Cumulative Sample Loss (CSL).CSL represents the accumulated loss of a sample throughout the training process.CSL exhibits remarkable similarity to stability-based memorization, as evidenced by considerably high cosine similarity scores. We delve into the theory behind these results, demonstrating that low CSL leads to nontrivial bounds on the extent of stability-based memorization and learning time. The proposed proxy, CSL, is four orders of magnitude less computationally expensive than the stability-based method and can be obtained with zero additional overhead during training. We demonstrate the practical utility of the proposed proxy in identifying mislabeled samples and detecting duplicates where our metric achieves state-of-the-art performance.

Reinforcement Learning · Batch/Offline

Seohong Park, Qiyang Li, Sergey Levine

We present flow Q-learning (FQL), a simple and performant offline reinforcement learning (RL) method that leverages an expressive flow-matching policy to model arbitrarily complex action distributions in data. Training a flow policy with RL is a tricky problem, due to the iterative nature of the action generation process. We address this challenge by training an expressive one-step policy with RL, rather than directly guiding an iterative flow policy to maximize values. This way, we can completely avoid unstable recursive backpropagation, eliminate costly iterative action generation at test time, yet still mostly maintain expressivity. We experimentally show that FQL leads to strong performance across 73 challenging state- and pixel-based OGBench and D4RL tasks in offline RL and offline-to-online RL.

Applications · Health / Medicine

Xiangzhe Kong, Zishen Zhang, Ziting Zhang, Rui Jiao, Jianzhu Ma, Wenbing Huang, Kai Liu, Yang Liu

The design of target-specific molecules such as small molecules, peptides, and antibodies is vital for biological research and drug discovery. Existing generative methods are restricted to single-domain molecules, failing to address versatile therapeutic needs or utilize cross-domain transferability to enhance model performance. In this paper, we introduce **Uni**fied generative **Mo**delingof 3D **Mo**lecules (UniMoMo), the first framework capable of designing binders of multiple molecular domains using a single model. In particular, UniMoMo unifies the representations of different molecules as graphs of blocks, where each block corresponds to either a standard amino acid or a molecular fragment. Based on these unified representations, UniMoMo utilizes a geometric latent diffusion model for 3D molecular generation, featuring an iterative full-atom autoencoder to compress blocks into latent space points, followed by an E(3)-equivariant diffusion process. Extensive benchmarks across peptides, antibodies, and small molecules demonstrate the superiority of our unified framework over existing domain-specific models, highlighting the benefits of multi-domain training.

Deep Learning · Robustness

Ali Bahri, Moslem Yazdanpanah, Sahar Dastani Oghani, Mehrdad Noori, Gustavo Vargas Hakim, David OSOWIECHI, Farzad Beizaee, Ismail Ben Ayed, Christian Desrosiers

Test-Time Training has emerged as a promising solution to address distribution shifts in 3D point cloud classification. However, existing methods often rely on computationally expensive backpropagation during adaptation, limiting their applicability in real-world, time-sensitive scenarios. In this paper, we introduce SMART-PC, a skeleton-based framework that enhances resilience to corruptions by leveraging the geometric structure of 3D point clouds. During pre-training, our method predicts skeletal representations, enabling the model to extract robust and meaningful geometric features that are less sensitive to corruptions, thereby improving adaptability to test-time distribution shifts.Unlike prior approaches, SMART-PC achieves real-time adaptation by eliminating backpropagation and updating only BatchNorm statistics, resulting in a lightweight and efficient framework capable of achieving high frame-per-second rates while maintaining superior classification performance. Extensive experiments on benchmark datasets, including ModelNet40-C, ShapeNet-C, and ScanObjectNN-C, demonstrate that SMART-PC achieves state-of-the-art results, outperforming existing methods such as MATE in terms of both accuracy and computational efficiency. The implementation is available at: \url{https://github.com/AliBahri94/SMART-PC}.

Deep Learning · Graph Neural Networks

Liang Yang, Yuwei Liu, Jiaming Zhuo, Di Jin, Chuan Wang, Zhen Wang, Xiaochun Cao

Brain network analysis plays a critical role in brain disease prediction and diagnosis. Graph mining tools have made remarkable progress. Graph neural networks (GNNs) and Transformers, which rely on the message-passing scheme, recently dominated this field due to their powerful expressive ability on graph data. Unfortunately, by considering brain network construction using pairwise Pearson’s coefficients between any pairs of ROIs, model analysis and experimental verification reveal that *the message-passing under both GNNs and Transformers can NOT be fully explored and exploited*. Surprisingly, this paper observes the significant performance and efficiency enhancements of the Hadamard product compared to the matrix product, which is the matrix form of message passing, in processing the brain network. Inspired by this finding, a novel Brain Quadratic Network (BQN) is proposed by incorporating quadratic networks, which possess better universal approximation properties. Moreover, theoretical analysis demonstrates that BQN implicitly performs community detection along with representation learning. Extensive evaluations verify the superiority of the proposed BQN compared to the message-passing-based brain network modeling. Source code is available at [https://github.com/LYWJUN/BQN-demo](https://github.com/LYWJUN/BQN-demo).

Reinforcement Learning · Multi-agent

Haoyuan Qin, Zhengzhu Liu, Chenxing Lin, Chennan Ma, Songzhu Mei, Siqi Shen, Cheng Wang

Parameter-sharing (PS) techniques have been widely adopted in cooperative Multi-Agent Reinforcement Learning (MARL). In PS, all the agents share a policy network with identical parameters, which enjoys good sample efficiency. However, PS could lead to homogeneous policies that limit MARL performance. We tackle this problem from the angle of gradient conflict among agents. We find that the existence of futile neurons whose update is canceled out by gradient conflicts among agents leads to poor learning efficiency and diversity. To address this deficiency, we propose GradPS, a gradient-based PS method. It dynamically creates multiple clones for each futile neuron. For each clone, a group of agents with low gradient-conflict shares the neuron's parameters.Our method can enjoy good sample efficiency by sharing the gradients among agents of the same clone neuron. Moreover, it can encourage diverse behaviors through independently updating an exclusive clone neuron. Through extensive experiments, we show that GradPS can learn diverse policies with promising performance. The source code for GradPS is available in \url{https://github.com/xmu-rl-3dv/GradPS}.

Deep Learning · Large Language Models

Junlin Wang, Roy Xie, Shang Zhu, Jue Wang, Ben Athiwaratkun, Bhuwan Dhingra, Shuaiwen Song, Ce Zhang, James Zou

Building helpful and harmless large language models (LLMs) requires effective model alignment approach based on human instructions and feedback, which necessitates high-quality human-labeled data. Constructing such datasets is often expensive and hard to scale, and may face potential limitations on diversity and generalization. To address these challenges, we introduce Mixture of Agents Alignment (MoAA), that leverages the collective strengths of various language models to provide high-quality data for model alignment. By employing MoAA, we enhance both supervised fine-tuning and preference optimization, leading to improved performance compared to using a single model alone to generate alignment data (e.g. using GPT-4o alone). Evaluation results show that our approach can improve win rate of LLaMA-3.1-8B-Instruct from 19.5 to 48.3 on Arena-Hard and from 22.33 to 57.23 on AlpacaEval2, highlighting a promising direction for model alignment through this new scalable and diverse synthetic data recipe. Furthermore, we demonstrate that MoAA enables a self-improvement pipeline, where models fine-tuned on MoA-generated data surpass their own initial capabilities, providing evidence that our approach can push the frontier of open-source LLMs without reliance on stronger external supervision. Data and code will be released.

Applications · Robotics

Sung June Kim, Gyeongrok Oh, Heeju Ko, Daehyun Ji, Dongwook Lee, Byung-Jun Lee, Sujin Jang, Sangpil Kim

Navigating in an unfamiliar environment during deployment poses a critical challenge for a vision-language navigation (VLN) agent. Yet, test-time adaptation (TTA) remains relatively underexplored in robotic navigation, leading us to the fundamental question: what are the key properties of TTA for online VLN? In our view, effective adaptation requires three qualities: 1) flexibility in handling different navigation outcomes, 2) interactivity with external environment, and 3) maintaining a harmony between plasticity and stability. To address this, we introduce FeedTTA, a novel TTA framework for online VLN utilizing feedback-based reinforcement learning. Specifically, FeedTTA learns by maximizing binary episodic feedback, a practical setup in which the agent receives a binary scalar after each episode that indicates the success or failure of the navigation. Additionally, we propose a gradient regularization technique that leverages the binary structure of FeedTTA to achieve a balance between plasticity and stability during adaptation. Our extensive experiments on challenging VLN benchmarks demonstrate the superior adaptability of FeedTTA, even outperforming the state-of-the-art offline training methods in REVERIE benchmark with a single stream of learning.

Deep Learning · Large Language Models

Bowen Jin, Jinsung Yoon, Zhen Qin, Ziqi Wang, Wei Xiong, Yu Meng, Jiawei Han, Sercan Arik

Large Language Models (LLMs) have revolutionized artificial intelligence with capabilities in reasoning, coding, and communication, driving innovation across industries. Their true potential depends on effective alignment to ensure correct, trustworthy and ethical behavior, addressing challenges like misinformation, hallucinations, bias and misuse. While existing Reinforcement Learning (RL)-based alignment methods are notoriously complex, direct optimization approaches offer a simpler alternative.In this work, we introduce a novel direct optimization approach for LLM alignment by drawing on established Information Retrieval (IR) principles. We present a systematic framework that bridges LLM alignment and IR methodologies, mapping LLM generation and reward models to IR's retriever-reranker paradigm. Building on this foundation, we propose LLM Alignment as Retriever Preference Optimization (LarPO), a new alignment method that enhances overall alignment quality. Extensive experiments validate LarPO's effectiveness with 38.9 % and 13.7 % averaged improvement on AlpacaEval2 and MixEval-Hard respectively. Our work opens new avenues for advancing LLM alignment by integrating IR foundations, offering a promising direction for future research.

Optimization · Discrete and Combinatorial Optimization

Mingjun Pan, Guanquan Lin, You-Wei Luo, Bin Zhu, Zhien Dai, Lijun Sun, Chun Yuan

Reinforcement Learning (RL) has emerged as a powerful tool for neural combinatorial optimization, enabling models to learn heuristics that solve complex problems without requiring expert knowledge. Despite significant progress, existing RL approaches face challenges such as diminishing reward signals and inefficient exploration in vast combinatorial action spaces, leading to inefficiency. In this paper, we propose **Preference Optimization**, a novel method that transforms quantitative reward signals into qualitative preference signals via statistical comparison modeling, emphasizing the superiority among sampled solutions. Methodologically, by reparameterizing the reward function in terms of policy and utilizing preference models, we formulate an entropy-regularized RL objective that aligns the policy directly with preferences while avoiding intractable computations. Furthermore, we integrate local search techniques into the fine-tuning rather than post-process to generate high-quality preference pairs, helping the policy escape local optima. Empirical results on various benchmarks, such as the Traveling Salesman Problem (TSP), the Capacitated Vehicle Routing Problem (CVRP) and the Flexible Flow Shop Problem (FFSP), demonstrate that our method significantly outperforms existing RL algorithms, achieving superior convergence efficiency and solution quality.

General Machine Learning

Guanghui Wang, Zhiyong Yang, Zitai Wang, Shi Wang, Qianqian Xu, Qingming Huang

Knowledge Distillation (KD) transfers knowledge from a large teacher model to a smaller student model by minimizing the divergence between their output distributions, typically using forward Kullback-Leibler divergence (FKLD) or reverse KLD (RKLD). It has become an effective training paradigm due to the broader supervision information provided by the teacher distribution compared to one-hot labels. We identify that the core challenge in KD lies in balancing two mode-concentration effects: the \textbf{\textit{Hardness-Concentration}} effect, which refers to focusing on modes with large errors, and the \textbf{\textit{Confidence-Concentration}} effect, which refers to focusing on modes with high student confidence. Through an analysis of how probabilities are reassigned during gradient updates, we observe that these two effects are entangled in FKLD and RKLD, but in extreme forms. Specifically, both are too weak in FKLD, causing the student to fail to concentrate on the target class. In contrast, both are too strong in RKLD, causing the student to overly emphasize the target class while ignoring the broader distributional information from the teacher. To address this imbalance, we propose ABKD, a generic framework with $\alpha$-$\beta$-divergence. Our theoretical results show that ABKD offers a smooth interpolation between FKLD and RKLD, achieving a better trade-off between these effects. Extensive experiments on 17 language/vision datasets with 12 teacher-student settings confirm its efficacy.

Theory · Everything Else

Xinyu Yang, Tom Zollo, Benjamin Eyre, Amogh Inamdar, David Madras, Richard Zemel

As machine learning models grow increasingly competent, their predictions can supplement scarce or expensive data in various important domains. In support of this paradigm, algorithms have emerged to combine a small amount of high-fidelity observed data with a much larger set of imputed model outputs to estimate some quantity of interest. Yet current hybrid-inference tools target only means or single quantiles, limiting their applicability for many critical domains and use cases. We present QuEst, a principled framework to merge observed and imputed data to deliver point estimates and rigorous confidence intervals for a wide family of quantile-based distributional measures. QuEst covers a range of measures, from tail risk (CVaR) to population segments such as quartiles, that are central to fields such as economics, sociology, education, medicine, and more. We extend QuEst to multidimensional metrics, and introduce an additional optimization technique to further reduce variance in this and other hybrid estimators. We demonstrate the utility of our framework through experiments in economic modeling, opinion polling, and language model auto-evaluation.

Applications · Chemistry, Physics, and Earth Sciences

Ning Liu, Yue Yu

Attention mechanisms have emerged as transformative tools in core AI domains such as natural language processing and computer vision. Yet, their largely untapped potential for modeling intricate physical systems presents a compelling frontier. Learning such systems often entails discovering operators that map between functional spaces using limited instances of function pairs---a task commonly framed as a severely ill-posed inverse PDE problem. In this work, we introduce Neural Interpretable PDEs (NIPS), a novel neural operator architecture that builds upon and enhances Nonlocal Attention Operators (NAO) in both predictive accuracy and computational efficiency. NIPS employs a linear attention mechanism to enable scalable learning and integrates a learnable kernel network that acts as a channel-independent convolution in Fourier space. As a consequence, NIPS eliminates the need to explicitly compute and store large pairwise interactions, effectively amortizing the cost of handling spatial interactions into the Fourier transform. Empirical evaluations demonstrate that NIPS consistently surpasses NAO and other baselines across diverse benchmarks, heralding a substantial leap in scalable, interpretable, and efficient physics learning. Our code and data accompanying this paper are available at https://github.com/fishmoon1234/Nonlocal-Attention-Operator.

Probabilistic Methods · Bayesian Models and Methods

Parikshit Pareek, Abhijith Jayakumar, Kaarthik Sundar, Sidhant Misra, Deepjyoti Deka

Constrained optimization problems arise in various engineering systems such as inventory management and power grids. Standard deep neural network (DNN) based machine learning proxies are ineffective in practical settings where labeled data is scarce and training times are limited. We propose a semi-supervised Bayesian Neural Networks (BNNs) based optimization proxy for this complex regime, wherein training commences in a sandwiched fashion, alternating between a supervised learning step for minimizing cost, and an unsupervised learning step for enforcing constraint feasibility. We show that the proposed semi-supervised BNN outperforms DNN architectures on important non-convex constrained optimization problems from energy network operations, achieving up to a tenfold reduction in expected maximum equality gap and halving the inequality gaps. Further, the BNN's ability to provide posterior samples is leveraged to construct practically meaningful probabilistic confidence bounds on performance using a limited validation data, unlike prior methods.

Applications · Health / Medicine

Da Kuang, GuanWen Qiu, Junhyong Kim

How a single fertilized cell gives rise to a complex array of specialized cell types in development is a central question in biology. The cells replicate to generate cell lineages and acquire differentiated characteristics through poorly understood molecular processes. A key approach to studying developmental processes is to infer the tree graph of cell lineage histories, which provides an analytical framework for dissecting individual cells' molecular decisions during replication and differentiation (i.e., acquisition of specialized traits). Although genetically engineered lineage-tracing methods have advanced the field, they are either infeasible or ethically constrained in many organisms. By contrast, modern single-cell technologies can measure high-content molecular profiles (*e.g.*, transcriptomes) in a wide range of biological systems. Here, we introduce *CellTreeQM*, a novel deep learning method based on transformer architectures that learns an embedding space with geometric properties optimized for tree-graph inference. By formulating the lineage reconstruction problem as tree-metric learning, we systematically explore weakly supervised training settings at different levels of information and present the *Cell Lineage Reconstruction Benchmark* to facilitate comprehensive evaluation. This benchmark includes (1) synthetic data modeled via Brownian motion with independent noise and spurious signals; (2) lineage-resolved single-cell RNA sequencing datasets. Experimental results show that *CellTreeQM* recovers lineage structures with minimal supervision and limited data, offering a scalable framework for uncovering cell lineage relationships. To our knowledge, this is the first method to cast cell lineage inference explicitly as a metric learning task, paving the way for future computational models aimed at uncovering the molecular dynamics of cell lineage. Code and benchmarks are available at: https://kuang-da.github.io/CellTreeQM-page

Social Aspects · Fairness

Sivan Sabato, Eran Treister, Elad Yom-Tov

We propose methods for auditing multiclass classifiers for fairness under multiclass equalized odds, by estimating the deviation from equalized odds when the classifier is not completely fair. We generalize to multiclass classifiers the measure of Disparate Conditional Prediction (DCP), originally suggested by Sabato & Yom-Tov (2020) for binary classifiers. DCP is defined as the fraction of the population for which the classifier predicts with conditional prediction probabilities that differ from the closest common baseline. We provide new local-optimization methods for estimating the multiclass DCP under two different regimes, one in which the conditional confusion matrices for each protected sub-population are known, and one in which these cannot be estimated, for instance, because the classifier is inaccessible orbecause good-quality individual-level data is not available. These methods can be used to detect classifiers that likely treat a significant fraction of the population unfairly. Experiments demonstrate the accuracy of the methods. The code for the experiments is provided as supplementary material.

Deep Learning · Everything Else

Hung-Chieh Fang, Po-Yi Lu, Hsuan-Tien (Tien) Lin

Universal Domain Adaptation (UniDA) addresses unsupervised domain adaptation where target classes may differ arbitrarily from source ones, except for a shared subset. A widely used approach, partial domain matching (PDM), aligns only shared classes but struggles in extreme cases where many source classes are absent in the target domain, underperforming the most naive baseline that trains on only source data. In this work, we identify that the failure of PDM for extreme UniDA stems from dimensional collapse (DC) in target representations. To address target DC, we propose to jointly leverage the alignment and uniformity techniques in self-supervised learning on the unlabeled target data to preserve the intrinsic structure of the learned representations. Our experimental results confirm that SSL consistently advances PDM and delivers new state-of-the-art results across a broader benchmark of UniDA scenarios with different portions of shared classes, representing a crucial step toward truly comprehensive UniDA. Project page: https://dc-unida.github.io/

Applications · Chemistry, Physics, and Earth Sciences

Ibrahim Fayad, Max Zimmer, Martin Schwartz, Fabian Gieseke, Philippe CIAIS, Gabriel Belouze, Sarah Brood, Aurélien de Truchis, Alexandre d'Aspremont

Significant efforts have been directed towards adapting self-supervised multimodal learning for Earth observation applications. However, most current methods produce coarse patch-sized embeddings, limiting their effectiveness and integration with other modalities like LiDAR. To close this gap, we present DUNIA, an approach to learn pixel-sized embeddings through cross-modal alignment between images and full-waveform LiDAR data. As the model is trained in a contrastive manner, the embeddings can be directly leveraged in the context of a variety of environmental monitoring tasks in a zero-shot setting. In our experiments, we demonstrate the effectiveness of the embeddings for seven such tasks: canopy height mapping, fractional canopy cover, land cover mapping, tree species identification, plant area index, crop type classification, and per-pixel waveform-based vertical structure mapping. The results show that the embeddings, along with zero-shot classifiers, often outperform specialized supervised models, even in low-data regimes. In the fine-tuning setting, we show strong performances near or better than the state-of-the-art on five out of six tasks.